Wall clock time and date at job start Wed Apr 1 2020 04:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99631 * 2 1 4 4 H 1.48498 * 109.46770 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47325 * 300.00270 * 3 2 1 6 6 H 1.48496 * 109.46862 * 60.00306 * 3 2 1 7 7 C 1.38805 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00130 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.47021 * 125.64419 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.27224 * 178.92107 * 10 9 7 12 12 C 1.55159 * 102.93977 * 337.81106 * 11 10 9 13 13 H 1.09002 * 111.00064 * 277.38573 * 12 11 10 14 14 C 1.53000 * 111.00526 * 153.57666 * 12 11 10 15 15 N 1.46497 * 109.47040 * 174.99776 * 14 12 11 16 16 C 1.34783 * 119.99873 * 180.02562 * 15 14 12 17 17 O 1.21720 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.46433 * 119.99817 * 180.02562 * 16 15 14 19 19 C 1.36854 * 126.11220 * 179.97438 * 18 16 15 20 20 N 1.30654 * 114.05342 * 179.97438 * 19 18 16 21 21 C 1.30434 * 117.27129 * 0.02562 * 20 19 18 22 22 C 1.47637 * 124.76185 * 179.97438 * 21 20 19 23 23 C 1.46921 * 127.15971 * 0.19951 * 22 21 20 24 24 C 1.34255 * 105.99801 * 180.23580 * 23 22 21 25 25 O 1.34195 * 109.08971 * 359.77435 * 24 23 22 26 26 C 1.33915 * 110.83545 * 0.02562 * 25 24 23 27 27 S 1.70923 * 110.48531 * 0.26277 * 21 20 19 28 28 C 1.47420 * 125.65063 * 180.02562 * 9 7 2 29 29 H 0.96999 * 119.99808 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.88626 * 59.50078 * 10 9 7 31 31 H 1.09004 * 109.88850 * 298.33745 * 10 9 7 32 32 H 1.08994 * 110.72416 * 219.44329 * 11 10 9 33 33 H 1.09000 * 110.87218 * 96.23834 * 11 10 9 34 34 H 1.09003 * 109.47128 * 54.99548 * 14 12 11 35 35 H 1.08995 * 109.47093 * 294.99716 * 14 12 11 36 36 H 0.97002 * 120.00469 * 359.97438 * 15 14 12 37 37 H 1.08007 * 122.97101 * 0.02562 * 19 18 16 38 38 H 1.08008 * 127.00515 * 0.02562 * 23 22 21 39 39 H 1.07998 * 125.45685 * 179.79894 * 24 23 22 40 40 H 1.08002 * 125.79455 * 179.97438 * 26 25 24 41 41 H 1.09002 * 110.37156 * 85.30806 * 28 9 7 42 42 H 1.08995 * 110.36762 * 322.98337 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1373 -2.5328 -0.0005 11 6 -0.4483 -4.0441 -0.0283 12 6 0.8521 -4.6557 -0.6134 13 1 0.8567 -4.5958 -1.7017 14 6 1.0373 -6.1007 -0.1458 15 7 2.2062 -6.6828 -0.8098 16 6 2.5641 -7.9561 -0.5503 17 8 1.9164 -8.6221 0.2361 18 6 3.7329 -8.5377 -1.2135 19 6 4.2066 -9.8104 -1.0436 20 7 5.2681 -10.0829 -1.7549 21 6 5.7350 -9.1347 -2.5192 22 6 6.9215 -9.2618 -3.3885 23 6 7.7752 -10.4456 -3.5575 24 6 8.7264 -10.0933 -4.4371 25 8 8.5254 -8.8215 -4.8149 26 6 7.4513 -8.3068 -4.2029 27 16 4.7854 -7.7218 -2.3673 28 6 1.9337 -3.7311 -0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5575 -2.0516 -0.8837 31 1 -0.5543 -2.0851 0.9017 32 1 -1.2983 -4.2512 -0.6784 33 1 -0.6331 -4.4211 0.9776 34 1 0.1496 -6.6808 -0.3983 35 1 1.1870 -6.1170 0.9336 36 1 2.7222 -6.1522 -1.4368 37 1 3.7433 -10.5263 -0.3808 38 1 7.6628 -11.4030 -3.0704 39 1 9.5251 -10.7315 -4.7852 40 1 7.0719 -7.3036 -4.3301 41 1 2.1663 -4.0423 1.0179 42 1 2.8334 -3.7402 -0.6157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028849203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:56 Heat of formation + Delta-G solvation = 50.967153 kcal Electronic energy + Delta-G solvation = -26232.415275 eV Core-core repulsion = 22306.865278 eV Total energy + Delta-G solvation = -3925.549996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.91771 -40.29206 -39.26710 -37.65238 -34.77533 -33.93281 -32.59596 -31.10090 -30.23619 -29.54164 -28.29889 -26.51653 -25.44295 -23.78787 -22.58590 -21.83805 -21.49963 -20.30923 -20.05452 -19.63069 -18.85617 -17.64046 -17.02320 -16.73602 -16.54051 -16.05948 -15.71811 -15.43694 -15.08796 -14.66856 -14.65695 -14.32228 -13.97714 -13.73703 -13.56075 -13.33566 -13.11021 -12.81010 -12.39460 -12.07805 -11.96595 -11.78588 -11.45209 -10.93120 -10.84446 -10.82261 -10.56570 -10.35354 -10.16930 -10.05137 -9.94640 -9.85016 -9.84058 -9.69496 -9.55079 -9.13675 -8.67774 -8.63471 -6.86641 -5.74401 -3.08155 -0.33420 0.72400 1.17357 1.24680 1.78858 2.49108 2.54541 3.00273 3.04257 3.37319 3.42742 3.45338 3.54871 4.15607 4.46094 4.48790 4.56618 4.68187 4.89837 5.03950 5.08577 5.16490 5.25401 5.36988 5.46146 5.50853 5.63630 5.74432 5.83462 5.83485 5.97001 6.00210 6.26814 6.30606 6.44880 6.49188 6.51149 6.62534 6.85627 7.21599 7.35280 7.53108 7.60064 7.79825 7.99295 8.22804 9.18973 9.79296 10.45087 11.37383 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.002244 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.456871 B =12474.783745 C =14445.389495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.718 5.718 16 C 0.595 3.405 17 O -0.528 6.528 18 C -0.298 4.298 19 C 0.129 3.871 20 N -0.474 5.474 21 C 0.123 3.877 22 C -0.138 4.138 23 C -0.169 4.169 24 C -0.036 4.036 25 O -0.170 6.170 26 C 0.014 3.986 27 S 0.192 5.808 28 C 0.141 3.859 29 H 0.252 0.748 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.399 0.601 37 H 0.193 0.807 38 H 0.161 0.839 39 H 0.210 0.790 40 H 0.212 0.788 41 H 0.020 0.980 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.350 -20.660 -9.599 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.368 5.368 16 C 0.380 3.620 17 O -0.407 6.407 18 C -0.423 4.423 19 C -0.031 4.031 20 N -0.188 5.188 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.191 4.191 24 C -0.102 4.102 25 O -0.065 6.065 26 C -0.060 4.060 27 S 0.452 5.548 28 C 0.015 3.985 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.233 0.767 37 H 0.209 0.791 38 H 0.178 0.822 39 H 0.227 0.773 40 H 0.229 0.771 41 H 0.038 0.962 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.296 -20.186 -9.667 26.033 hybrid contribution 0.122 0.385 0.486 0.632 sum 13.418 -19.801 -9.181 25.621 Atomic orbital electron populations 1.69975 1.04883 1.24945 1.57093 1.24814 0.95740 0.97712 1.02253 0.86045 0.78695 0.83760 0.77262 1.20512 1.21742 1.21740 1.19094 0.90437 0.82402 1.43757 0.90429 1.44486 1.01742 0.99836 1.87187 1.21154 0.84308 0.88127 1.01178 1.22860 0.95295 0.99402 0.99762 1.22640 0.98847 0.91815 1.00577 0.90151 1.21502 0.86722 0.93357 0.97491 1.45999 1.31753 1.12490 1.46585 1.16607 0.82318 0.81800 0.81300 1.90852 1.53579 1.60890 1.35372 1.26101 1.05856 1.00235 1.10061 1.22442 0.90290 0.93883 0.96481 1.66425 1.12522 1.31566 1.08278 1.24329 0.98587 0.93124 0.98680 1.19204 0.96876 0.96178 1.02054 1.22828 0.95336 0.99433 1.01477 1.24008 1.02329 0.83462 1.00450 1.83899 1.40252 1.26198 1.56161 1.24250 0.87844 0.99010 0.94856 1.83792 1.19522 1.14752 1.36758 1.21593 0.93903 0.86221 0.96780 0.93778 0.93495 0.93838 0.91906 0.92104 0.91173 0.90847 0.76674 0.79072 0.82180 0.77323 0.77136 0.96227 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.27 10.28 -15.06 -0.15 -6.43 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.61 -15.13 3.39 -170.06 -0.58 -15.70 16 10 C 0.18 4.19 5.37 -3.06 -0.02 4.18 16 11 C -0.13 -2.38 6.42 -24.89 -0.16 -2.54 16 12 C -0.12 -1.91 3.05 -88.46 -0.27 -2.18 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 1.86 5.13 -4.04 -0.02 1.83 16 15 N -0.72 -9.21 5.50 -61.70 -0.34 -9.55 16 16 C 0.60 8.21 7.78 -12.96 -0.10 8.11 16 17 O -0.53 -8.87 16.87 5.17 0.09 -8.78 16 18 C -0.30 -3.50 6.51 -36.79 -0.24 -3.73 16 19 C 0.13 1.48 11.15 -18.55 -0.21 1.27 16 20 N -0.47 -5.51 10.52 -12.04 -0.13 -5.64 16 21 C 0.12 1.26 7.26 -14.31 -0.10 1.16 16 22 C -0.14 -1.21 6.32 -103.27 -0.65 -1.86 16 23 C -0.17 -1.27 11.14 -37.47 -0.42 -1.69 16 24 C -0.04 -0.20 12.04 29.33 0.35 0.15 16 25 O -0.17 -1.17 10.54 7.03 0.07 -1.09 16 26 C 0.01 0.09 11.83 30.01 0.36 0.45 16 27 S 0.19 1.75 22.03 -107.50 -2.37 -0.62 16 28 C 0.14 2.77 6.65 -2.52 -0.02 2.75 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 31 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 36 H 0.40 4.49 7.65 -40.82 -0.31 4.18 16 37 H 0.19 1.96 8.06 -52.48 -0.42 1.54 16 38 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 39 H 0.21 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -34.13 373.82 -9.07 -43.20 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.25 Total: 0.84 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.75 Total: 1.14 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.47 Total: -57.13 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.16 Total: -9.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.37 Total: -0.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.13 -9.07 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028849203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.168 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds