Wall clock time and date at job start Wed Apr 1 2020 04:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99631 * 2 1 4 4 H 1.48498 * 109.46770 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47325 * 300.00270 * 3 2 1 6 6 H 1.48496 * 109.46862 * 60.00306 * 3 2 1 7 7 C 1.38805 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00130 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.47021 * 125.64419 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.27224 * 178.92107 * 10 9 7 12 12 C 1.55159 * 102.93977 * 337.81106 * 11 10 9 13 13 H 1.09002 * 111.00064 * 277.38573 * 12 11 10 14 14 C 1.53000 * 111.00526 * 153.57666 * 12 11 10 15 15 N 1.46497 * 109.47040 * 174.99776 * 14 12 11 16 16 C 1.34783 * 119.99873 * 180.02562 * 15 14 12 17 17 O 1.21720 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.46433 * 119.99817 * 180.02562 * 16 15 14 19 19 C 1.36854 * 126.11220 * 179.97438 * 18 16 15 20 20 N 1.30654 * 114.05342 * 179.97438 * 19 18 16 21 21 C 1.30434 * 117.27129 * 0.02562 * 20 19 18 22 22 C 1.47637 * 124.76185 * 179.97438 * 21 20 19 23 23 C 1.46921 * 127.15971 * 0.19951 * 22 21 20 24 24 C 1.34255 * 105.99801 * 180.23580 * 23 22 21 25 25 O 1.34195 * 109.08971 * 359.77435 * 24 23 22 26 26 C 1.33915 * 110.83545 * 0.02562 * 25 24 23 27 27 S 1.70923 * 110.48531 * 0.26277 * 21 20 19 28 28 C 1.47420 * 125.65063 * 180.02562 * 9 7 2 29 29 H 0.96999 * 119.99808 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.88626 * 59.50078 * 10 9 7 31 31 H 1.09004 * 109.88850 * 298.33745 * 10 9 7 32 32 H 1.08994 * 110.72416 * 219.44329 * 11 10 9 33 33 H 1.09000 * 110.87218 * 96.23834 * 11 10 9 34 34 H 1.09003 * 109.47128 * 54.99548 * 14 12 11 35 35 H 1.08995 * 109.47093 * 294.99716 * 14 12 11 36 36 H 0.97002 * 120.00469 * 359.97438 * 15 14 12 37 37 H 1.08007 * 122.97101 * 0.02562 * 19 18 16 38 38 H 1.08008 * 127.00515 * 0.02562 * 23 22 21 39 39 H 1.07998 * 125.45685 * 179.79894 * 24 23 22 40 40 H 1.08002 * 125.79455 * 179.97438 * 26 25 24 41 41 H 1.09002 * 110.37156 * 85.30806 * 28 9 7 42 42 H 1.08995 * 110.36762 * 322.98337 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1373 -2.5328 -0.0005 11 6 -0.4483 -4.0441 -0.0283 12 6 0.8521 -4.6557 -0.6134 13 1 0.8567 -4.5958 -1.7017 14 6 1.0373 -6.1007 -0.1458 15 7 2.2062 -6.6828 -0.8098 16 6 2.5641 -7.9561 -0.5503 17 8 1.9164 -8.6221 0.2361 18 6 3.7329 -8.5377 -1.2135 19 6 4.2066 -9.8104 -1.0436 20 7 5.2681 -10.0829 -1.7549 21 6 5.7350 -9.1347 -2.5192 22 6 6.9215 -9.2618 -3.3885 23 6 7.7752 -10.4456 -3.5575 24 6 8.7264 -10.0933 -4.4371 25 8 8.5254 -8.8215 -4.8149 26 6 7.4513 -8.3068 -4.2029 27 16 4.7854 -7.7218 -2.3673 28 6 1.9337 -3.7311 -0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5575 -2.0516 -0.8837 31 1 -0.5543 -2.0851 0.9017 32 1 -1.2983 -4.2512 -0.6784 33 1 -0.6331 -4.4211 0.9776 34 1 0.1496 -6.6808 -0.3983 35 1 1.1870 -6.1170 0.9336 36 1 2.7222 -6.1522 -1.4368 37 1 3.7433 -10.5263 -0.3808 38 1 7.6628 -11.4030 -3.0704 39 1 9.5251 -10.7315 -4.7852 40 1 7.0719 -7.3036 -4.3301 41 1 2.1663 -4.0423 1.0179 42 1 2.8334 -3.7402 -0.6157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028849203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:55 Heat of formation + Delta-G solvation = 27.939093 kcal Electronic energy + Delta-G solvation = -26233.413846 eV Core-core repulsion = 22306.865278 eV Total energy + Delta-G solvation = -3926.548568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.42479 -41.24444 -40.27245 -39.19502 -36.13061 -34.56527 -34.33245 -32.05378 -31.43097 -30.64501 -29.74560 -27.59543 -26.91088 -25.29173 -23.37194 -22.59945 -22.26082 -21.83551 -21.51140 -20.50564 -19.74680 -18.80024 -18.34800 -17.79323 -17.16493 -17.06181 -16.80841 -16.64103 -16.30389 -15.92519 -15.67489 -15.45518 -15.33910 -14.88147 -14.59122 -14.33426 -13.98410 -13.84308 -13.82098 -13.46358 -13.33724 -13.06427 -12.78705 -12.73187 -12.65665 -11.97950 -11.93350 -11.85795 -11.56659 -11.52050 -11.47916 -11.38387 -10.88915 -10.70738 -10.62668 -10.24129 -10.07448 -9.34306 -8.89054 -7.84385 -5.19856 -1.12121 -0.03964 0.37369 0.66595 1.16421 1.46768 1.47724 1.57883 1.76517 1.96018 2.05963 2.10780 2.50031 2.86355 3.34085 3.57808 3.66352 3.71398 3.81818 3.87891 4.00807 4.01941 4.03811 4.16186 4.43181 4.54710 4.62002 4.69725 4.76081 4.80195 4.90779 4.95795 5.01708 5.02460 5.08642 5.22641 5.34811 5.42437 5.46976 5.69051 5.79222 6.01533 6.21013 6.27713 6.48558 6.96020 7.11354 7.78936 8.43070 9.26286 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.002244 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.456871 B =12474.783745 C =14445.389495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.122 4.122 12 C -0.097 4.097 13 H 0.092 0.908 14 C 0.143 3.857 15 N -0.712 5.712 16 C 0.599 3.401 17 O -0.564 6.564 18 C -0.328 4.328 19 C 0.130 3.870 20 N -0.499 5.499 21 C 0.122 3.878 22 C -0.173 4.173 23 C -0.196 4.196 24 C -0.021 4.021 25 O -0.175 6.175 26 C 0.029 3.971 27 S 0.247 5.753 28 C 0.136 3.864 29 H 0.246 0.754 30 H 0.014 0.986 31 H 0.004 0.996 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.408 0.592 37 H 0.195 0.805 38 H 0.159 0.841 39 H 0.247 0.753 40 H 0.239 0.761 41 H 0.019 0.981 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.412 -21.366 -11.195 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.368 4.368 8 H 0.102 0.898 9 N -0.355 5.355 10 C 0.057 3.943 11 C -0.161 4.161 12 C -0.116 4.116 13 H 0.110 0.890 14 C 0.020 3.980 15 N -0.363 5.363 16 C 0.385 3.615 17 O -0.445 6.445 18 C -0.452 4.452 19 C -0.030 4.030 20 N -0.214 5.214 21 C -0.147 4.147 22 C -0.179 4.179 23 C -0.217 4.217 24 C -0.086 4.086 25 O -0.069 6.069 26 C -0.045 4.045 27 S 0.508 5.492 28 C 0.011 3.989 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.022 0.978 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.244 0.756 37 H 0.212 0.788 38 H 0.176 0.824 39 H 0.263 0.737 40 H 0.255 0.745 41 H 0.037 0.963 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.398 -20.904 -11.286 28.310 hybrid contribution -0.386 0.566 0.922 1.148 sum 15.012 -20.338 -10.364 27.321 Atomic orbital electron populations 1.70199 1.06321 1.25137 1.58497 1.25667 0.96626 1.01090 1.02818 0.85016 0.78291 0.79473 0.76601 1.18779 1.21851 1.22278 1.19506 0.91054 0.83694 1.42574 0.89800 1.44813 1.02515 1.01197 1.86977 1.20925 0.83807 0.91833 0.97705 1.22720 0.97044 0.94921 1.01387 1.22441 0.96188 0.92123 1.00885 0.88977 1.21291 0.87714 0.91952 0.97061 1.45873 1.31485 1.12378 1.46524 1.16768 0.82405 0.81589 0.80721 1.90828 1.54950 1.61714 1.37039 1.25914 1.06417 1.00924 1.11971 1.22562 0.90188 0.94046 0.96246 1.66473 1.13051 1.32538 1.09359 1.24697 0.98724 0.93410 0.97890 1.19445 0.97385 0.97688 1.03373 1.22989 0.96327 0.99488 1.02912 1.24673 1.02118 0.82975 0.98875 1.83938 1.40147 1.26800 1.56064 1.24751 0.86985 0.99497 0.93227 1.83455 1.17748 1.13032 1.34968 1.21788 0.95367 0.84505 0.97245 0.94484 0.96810 0.97823 0.89465 0.90942 0.89987 0.91601 0.75636 0.78836 0.82355 0.73699 0.74523 0.96338 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.12 10.31 21.65 0.22 -56.89 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 3 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.24 -13.16 10.28 84.03 0.86 -12.30 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -31.45 3.39 -691.96 -2.35 -33.80 16 10 C 0.18 8.82 5.37 86.73 0.47 9.29 16 11 C -0.12 -4.16 6.42 31.78 0.20 -3.96 16 12 C -0.10 -2.90 3.05 -9.39 -0.03 -2.93 16 13 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 14 C 0.14 3.70 5.13 86.38 0.44 4.15 16 15 N -0.71 -16.85 5.50 -467.31 -2.57 -19.42 16 16 C 0.60 15.89 7.78 86.38 0.67 16.56 16 17 O -0.56 -18.68 16.87 -4.41 -0.07 -18.76 16 18 C -0.33 -7.37 6.51 24.08 0.16 -7.22 16 19 C 0.13 2.97 11.15 84.54 0.94 3.91 16 20 N -0.50 -11.42 10.52 -192.00 -2.02 -13.44 16 21 C 0.12 2.35 7.26 87.38 0.63 2.98 16 22 C -0.17 -2.76 6.32 -18.99 -0.12 -2.88 16 23 C -0.20 -2.68 11.14 23.64 0.26 -2.41 16 24 C -0.02 -0.18 12.04 66.91 0.81 0.63 16 25 O -0.17 -1.91 10.54 2.24 0.02 -1.89 16 26 C 0.03 0.31 11.83 67.35 0.80 1.11 16 27 S 0.25 4.01 22.03 -56.49 -1.24 2.77 16 28 C 0.14 5.14 6.65 86.86 0.58 5.72 16 29 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.01 0.74 7.38 -2.39 -0.02 0.72 16 31 H 0.00 0.19 7.51 -2.39 -0.02 0.18 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.85 7.96 -2.39 -0.02 1.83 16 36 H 0.41 8.15 7.65 -92.71 -0.71 7.44 16 37 H 0.19 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.25 -0.06 8.06 -2.91 -0.02 -0.09 16 40 H 0.24 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.02 0.72 7.91 -2.39 -0.02 0.71 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -76.04 373.82 1.51 -74.53 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.35 Total: 10.43 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 7.14 Total: 9.21 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -6.72 Total: -123.56 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.24 Total: 2.77 kcal Total: -76.04 1.51 -74.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028849203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.471 kcal (2) G-P(sol) polarization free energy of solvation -76.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds