Wall clock time and date at job start Wed Apr 1 2020 04:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86793 * 119.99855 * 2 1 4 4 H 1.48504 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47219 * 300.00145 * 3 2 1 6 6 H 1.48505 * 109.47289 * 60.00015 * 3 2 1 7 7 C 1.38804 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00325 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64938 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.27309 * 178.92138 * 10 9 7 12 12 C 1.55154 * 102.94255 * 337.81219 * 11 10 9 13 13 H 1.08998 * 111.00564 * 277.38851 * 12 11 10 14 14 C 1.53002 * 111.00781 * 153.57228 * 12 11 10 15 15 N 1.46492 * 109.47578 * 174.99659 * 14 12 11 16 16 C 1.34772 * 120.00515 * 180.02562 * 15 14 12 17 17 O 1.21636 * 119.99531 * 0.02562 * 16 15 14 18 18 C 1.47270 * 120.00451 * 180.02562 * 16 15 14 19 19 C 1.35082 * 122.42866 * 180.02562 * 18 16 15 20 20 S 1.71008 * 109.13828 * 179.75259 * 19 18 16 21 21 C 1.75990 * 90.59421 * 0.33863 * 20 19 18 22 22 C 1.47876 * 125.31830 * 179.91703 * 21 20 19 23 23 C 1.46853 * 127.14267 * 359.82550 * 22 21 20 24 24 C 1.34307 * 106.00649 * 180.27496 * 23 22 21 25 25 O 1.34170 * 109.05378 * 359.77461 * 24 23 22 26 26 C 1.34011 * 110.80107 * 0.02562 * 25 24 23 27 27 N 1.29875 * 109.36019 * 359.65620 * 21 20 19 28 28 C 1.47424 * 125.64879 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.87927 * 59.50671 * 10 9 7 31 31 H 1.08997 * 109.88397 * 298.34382 * 10 9 7 32 32 H 1.08992 * 110.72311 * 219.44494 * 11 10 9 33 33 H 1.09002 * 110.86988 * 96.24573 * 11 10 9 34 34 H 1.09005 * 109.46754 * 54.99554 * 14 12 11 35 35 H 1.09001 * 109.47303 * 295.00489 * 14 12 11 36 36 H 0.97007 * 119.99647 * 0.02562 * 15 14 12 37 37 H 1.07997 * 125.43242 * 0.02562 * 19 18 16 38 38 H 1.08000 * 126.99745 * 0.08847 * 23 22 21 39 39 H 1.08001 * 125.46908 * 179.79875 * 24 23 22 40 40 H 1.08002 * 125.78535 * 179.97438 * 26 25 24 41 41 H 1.09004 * 110.36616 * 85.31026 * 28 9 7 42 42 H 1.08991 * 110.36925 * 322.98850 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0278 12 6 0.8524 -4.6560 -0.6116 13 1 0.8580 -4.5966 -1.6999 14 6 1.0372 -6.1008 -0.1432 15 7 2.2066 -6.6833 -0.8059 16 6 2.5643 -7.9563 -0.5455 17 8 1.9158 -8.6218 0.2395 18 6 3.7402 -8.5418 -1.2113 19 6 4.1421 -9.8118 -0.9871 20 16 5.5278 -10.1370 -1.9350 21 6 5.4894 -8.5019 -2.5850 22 6 6.4498 -7.9482 -3.5636 23 6 7.5978 -8.6374 -4.1668 24 6 8.1783 -7.7439 -4.9844 25 8 7.4906 -6.5929 -4.9344 26 6 6.4524 -6.6950 -4.0933 27 7 4.4825 -7.8594 -2.0750 28 6 1.9335 -3.7311 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5569 -2.0520 -0.8844 31 1 -0.5550 -2.0846 0.9011 32 1 -1.2979 -4.2514 -0.6785 33 1 -0.6341 -4.4206 0.9781 34 1 0.1497 -6.6810 -0.3960 35 1 1.1860 -6.1165 0.9365 36 1 2.7235 -6.1527 -1.4322 37 1 3.6620 -10.5118 -0.3194 38 1 7.9130 -9.6546 -3.9870 39 1 9.0572 -7.9233 -5.5859 40 1 5.7409 -5.9136 -3.8705 41 1 2.1660 -4.0423 1.0190 42 1 2.8332 -3.7403 -0.6145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028872862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:03 Heat of formation + Delta-G solvation = 48.799480 kcal Electronic energy + Delta-G solvation = -26612.484930 eV Core-core repulsion = 22686.840936 eV Total energy + Delta-G solvation = -3925.643994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.81673 -40.56741 -38.77516 -37.55069 -34.67879 -33.85251 -32.47666 -31.11249 -29.85708 -29.44701 -28.39471 -26.41438 -25.32374 -24.06711 -22.74483 -22.11530 -20.78832 -20.06342 -19.92831 -19.30816 -18.94375 -17.80023 -16.92577 -16.70624 -16.42177 -15.85644 -15.70202 -15.45804 -14.96177 -14.59429 -14.46251 -14.12276 -13.81785 -13.60886 -13.46572 -13.32652 -12.98711 -12.63991 -12.33336 -12.25667 -11.98990 -11.74298 -11.37602 -10.88338 -10.85837 -10.79835 -10.48754 -10.28236 -10.17000 -10.02766 -9.92196 -9.88721 -9.79956 -9.63899 -9.46376 -8.97567 -8.58698 -8.56419 -6.81018 -5.69617 -3.02944 0.00359 0.81775 1.24564 1.27759 1.60574 2.42904 2.62319 3.19230 3.30993 3.40752 3.46181 3.48737 3.54928 4.35356 4.37596 4.50915 4.68655 4.89007 4.95364 5.05107 5.14338 5.25129 5.26643 5.45089 5.56889 5.57940 5.67974 5.71925 5.83681 5.91954 6.05329 6.08145 6.37107 6.43220 6.53560 6.56137 6.62078 6.71013 6.93914 7.07558 7.58104 7.59008 7.65344 7.84676 8.17263 8.27924 9.24100 9.84465 10.50678 11.42269 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010251 B = 0.002582 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.803241 B =10843.796211 C =13220.494242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.704 5.704 16 C 0.589 3.411 17 O -0.540 6.540 18 C 0.021 3.979 19 C -0.221 4.221 20 S 0.178 5.822 21 C 0.134 3.866 22 C -0.143 4.143 23 C -0.199 4.199 24 C -0.027 4.027 25 O -0.174 6.174 26 C 0.044 3.956 27 N -0.443 5.443 28 C 0.142 3.858 29 H 0.251 0.749 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.192 0.808 38 H 0.156 0.844 39 H 0.209 0.791 40 H 0.219 0.781 41 H 0.019 0.981 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.130 -22.362 -9.491 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.137 4.137 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.354 5.354 16 C 0.372 3.628 17 O -0.418 6.418 18 C -0.115 4.115 19 C -0.363 4.363 20 S 0.436 5.564 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.219 4.219 24 C -0.093 4.093 25 O -0.069 6.069 26 C -0.030 4.030 27 N -0.158 5.158 28 C 0.016 3.984 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.246 0.754 37 H 0.209 0.791 38 H 0.174 0.826 39 H 0.225 0.775 40 H 0.235 0.765 41 H 0.037 0.963 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.175 -22.700 -9.319 28.338 hybrid contribution -0.165 1.239 0.365 1.302 sum 14.010 -21.461 -8.954 27.148 Atomic orbital electron populations 1.69983 1.04870 1.24865 1.57281 1.24806 0.95732 0.97670 1.02368 0.86048 0.78711 0.83807 0.77224 1.20516 1.21772 1.21781 1.19107 0.90452 0.82436 1.43507 0.90436 1.44493 1.01739 0.99880 1.87158 1.21145 0.84337 0.88143 1.01108 1.22858 0.95374 0.99407 0.99708 1.22608 0.98651 0.91860 1.00595 0.90146 1.21488 0.86964 0.93358 0.97427 1.45905 1.30902 1.12578 1.45984 1.17097 0.82456 0.82054 0.81228 1.90811 1.53804 1.61307 1.35849 1.20160 0.99524 0.91794 1.00003 1.26485 1.02125 1.01094 1.06565 1.83774 1.23248 1.14381 1.34948 1.24765 0.96177 0.93202 1.00089 1.19026 0.98099 0.95262 1.02392 1.22748 0.96659 1.01348 1.01179 1.23929 0.99205 0.83308 1.02904 1.83959 1.34228 1.36088 1.52606 1.24476 0.89911 0.97993 0.90573 1.67011 1.04560 1.34456 1.09771 1.21574 0.94005 0.86092 0.96742 0.93836 0.93545 0.93889 0.91972 0.92175 0.91394 0.91066 0.75350 0.79120 0.82612 0.77462 0.76479 0.96332 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.30 10.31 55.49 0.57 -26.73 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -15.58 3.40 -170.09 -0.58 -16.16 16 10 C 0.18 4.32 5.37 -3.07 -0.02 4.30 16 11 C -0.13 -2.48 6.42 -24.90 -0.16 -2.64 16 12 C -0.12 -2.00 3.05 -88.49 -0.27 -2.27 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.13 1.98 5.13 -4.05 -0.02 1.96 16 15 N -0.70 -10.10 5.50 -61.43 -0.34 -10.44 16 16 C 0.59 8.87 7.79 -12.59 -0.10 8.77 16 17 O -0.54 -9.45 16.65 5.25 0.09 -9.36 16 18 C 0.02 0.27 6.64 -84.92 -0.56 -0.29 16 19 C -0.22 -2.33 10.56 29.61 0.31 -2.02 16 20 S 0.18 1.44 23.07 -107.50 -2.48 -1.04 16 21 C 0.13 1.38 7.46 -14.44 -0.11 1.27 16 22 C -0.14 -1.28 6.32 -103.25 -0.65 -1.94 16 23 C -0.20 -1.31 11.04 -37.49 -0.41 -1.72 16 24 C -0.03 -0.15 12.04 29.35 0.35 0.20 16 25 O -0.17 -1.39 10.54 6.85 0.07 -1.32 16 26 C 0.04 0.38 12.05 29.95 0.36 0.74 16 27 N -0.44 -5.40 10.03 -8.11 -0.08 -5.48 16 28 C 0.14 2.92 6.65 -2.54 -0.02 2.91 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 31 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.14 7.96 -51.93 -0.41 0.72 16 36 H 0.41 5.54 7.95 -40.82 -0.32 5.22 16 37 H 0.19 1.79 7.99 -52.49 -0.42 1.37 16 38 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.21 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.22 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 374.27 15.07 5.64 5.64 Total: -1.00 -34.15 374.27 -8.94 -43.09 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.26 Total: 2.21 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.54 Total: 2.37 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.42 Total: -58.81 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.16 Total: -10.68 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.48 Total: -1.04 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.15 -8.94 -43.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028872862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.889 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds