Wall clock time and date at job start Wed Apr 1 2020 04:46:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86793 * 119.99855 * 2 1
4 4 H 1.48504 * 109.47016 * 180.02562 * 3 2 1
5 5 H 1.48501 * 109.47219 * 300.00145 * 3 2 1
6 6 H 1.48505 * 109.47289 * 60.00015 * 3 2 1
7 7 C 1.38804 * 119.99910 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00325 * 180.02562 * 7 2 1
9 9 N 1.36942 * 120.00126 * 0.02562 * 7 2 1
10 10 C 1.47022 * 125.64938 * 0.02562 * 9 7 2
11 11 C 1.54321 * 107.27309 * 178.92138 * 10 9 7
12 12 C 1.55154 * 102.94255 * 337.81219 * 11 10 9
13 13 H 1.08998 * 111.00564 * 277.38851 * 12 11 10
14 14 C 1.53002 * 111.00781 * 153.57228 * 12 11 10
15 15 N 1.46492 * 109.47578 * 174.99659 * 14 12 11
16 16 C 1.34772 * 120.00515 * 180.02562 * 15 14 12
17 17 O 1.21636 * 119.99531 * 0.02562 * 16 15 14
18 18 C 1.47270 * 120.00451 * 180.02562 * 16 15 14
19 19 C 1.35082 * 122.42866 * 180.02562 * 18 16 15
20 20 S 1.71008 * 109.13828 * 179.75259 * 19 18 16
21 21 C 1.75990 * 90.59421 * 0.33863 * 20 19 18
22 22 C 1.47876 * 125.31830 * 179.91703 * 21 20 19
23 23 C 1.46853 * 127.14267 * 359.82550 * 22 21 20
24 24 C 1.34307 * 106.00649 * 180.27496 * 23 22 21
25 25 O 1.34170 * 109.05378 * 359.77461 * 24 23 22
26 26 C 1.34011 * 110.80107 * 0.02562 * 25 24 23
27 27 N 1.29875 * 109.36019 * 359.65620 * 21 20 19
28 28 C 1.47424 * 125.64879 * 179.97438 * 9 7 2
29 29 H 0.97001 * 119.99684 * 359.97438 * 1 2 3
30 30 H 1.09005 * 109.87927 * 59.50671 * 10 9 7
31 31 H 1.08997 * 109.88397 * 298.34382 * 10 9 7
32 32 H 1.08992 * 110.72311 * 219.44494 * 11 10 9
33 33 H 1.09002 * 110.86988 * 96.24573 * 11 10 9
34 34 H 1.09005 * 109.46754 * 54.99554 * 14 12 11
35 35 H 1.09001 * 109.47303 * 295.00489 * 14 12 11
36 36 H 0.97007 * 119.99647 * 0.02562 * 15 14 12
37 37 H 1.07997 * 125.43242 * 0.02562 * 19 18 16
38 38 H 1.08000 * 126.99745 * 0.08847 * 23 22 21
39 39 H 1.08001 * 125.46908 * 179.79875 * 24 23 22
40 40 H 1.08002 * 125.78535 * 179.97438 * 26 25 24
41 41 H 1.09004 * 110.36616 * 85.31026 * 28 9 7
42 42 H 1.08991 * 110.36925 * 322.98850 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7103 1.3464 -0.0006
5 1 1.8914 2.3964 -1.2125
6 1 1.8915 2.3964 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2022 0.0010
9 7 1.3256 -2.3880 0.0005
10 6 -0.1375 -2.5328 -0.0005
11 6 -0.4484 -4.0441 -0.0278
12 6 0.8524 -4.6560 -0.6116
13 1 0.8580 -4.5966 -1.6999
14 6 1.0372 -6.1008 -0.1432
15 7 2.2066 -6.6833 -0.8059
16 6 2.5643 -7.9563 -0.5455
17 8 1.9158 -8.6218 0.2395
18 6 3.7402 -8.5418 -1.2113
19 6 4.1421 -9.8118 -0.9871
20 16 5.5278 -10.1370 -1.9350
21 6 5.4894 -8.5019 -2.5850
22 6 6.4498 -7.9482 -3.5636
23 6 7.5978 -8.6374 -4.1668
24 6 8.1783 -7.7439 -4.9844
25 8 7.4906 -6.5929 -4.9344
26 6 6.4524 -6.6950 -4.0933
27 7 4.4825 -7.8594 -2.0750
28 6 1.9335 -3.7311 0.0005
29 1 -0.4850 0.8401 0.0004
30 1 -0.5569 -2.0520 -0.8844
31 1 -0.5550 -2.0846 0.9011
32 1 -1.2979 -4.2514 -0.6785
33 1 -0.6341 -4.4206 0.9781
34 1 0.1497 -6.6810 -0.3960
35 1 1.1860 -6.1165 0.9365
36 1 2.7235 -6.1527 -1.4322
37 1 3.6620 -10.5118 -0.3194
38 1 7.9130 -9.6546 -3.9870
39 1 9.0572 -7.9233 -5.5859
40 1 5.7409 -5.9136 -3.8705
41 1 2.1660 -4.0423 1.0190
42 1 2.8332 -3.7403 -0.6145
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001028872862.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:03
Heat of formation + Delta-G solvation = 48.799480 kcal
Electronic energy + Delta-G solvation = -26612.484930 eV
Core-core repulsion = 22686.840936 eV
Total energy + Delta-G solvation = -3925.643994 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.81673 -40.56741 -38.77516 -37.55069 -34.67879 -33.85251 -32.47666 -31.11249
-29.85708 -29.44701 -28.39471 -26.41438 -25.32374 -24.06711 -22.74483 -22.11530
-20.78832 -20.06342 -19.92831 -19.30816 -18.94375 -17.80023 -16.92577 -16.70624
-16.42177 -15.85644 -15.70202 -15.45804 -14.96177 -14.59429 -14.46251 -14.12276
-13.81785 -13.60886 -13.46572 -13.32652 -12.98711 -12.63991 -12.33336 -12.25667
-11.98990 -11.74298 -11.37602 -10.88338 -10.85837 -10.79835 -10.48754 -10.28236
-10.17000 -10.02766 -9.92196 -9.88721 -9.79956 -9.63899 -9.46376 -8.97567
-8.58698 -8.56419 -6.81018 -5.69617 -3.02944 0.00359 0.81775 1.24564
1.27759 1.60574 2.42904 2.62319 3.19230 3.30993 3.40752 3.46181
3.48737 3.54928 4.35356 4.37596 4.50915 4.68655 4.89007 4.95364
5.05107 5.14338 5.25129 5.26643 5.45089 5.56889 5.57940 5.67974
5.71925 5.83681 5.91954 6.05329 6.08145 6.37107 6.43220 6.53560
6.56137 6.62078 6.71013 6.93914 7.07558 7.58104 7.59008 7.65344
7.84676 8.17263 8.27924 9.24100 9.84465 10.50678 11.42269
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.010251 B = 0.002582 C = 0.002117
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2730.803241 B =10843.796211 C =13220.494242
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.010 4.010
3 Si 0.911 3.089
4 H -0.280 1.280
5 H -0.291 1.291
6 H -0.291 1.291
7 C -0.227 4.227
8 H 0.078 0.922
9 N -0.606 5.606
10 C 0.177 3.823
11 C -0.135 4.135
12 C -0.117 4.117
13 H 0.080 0.920
14 C 0.131 3.869
15 N -0.704 5.704
16 C 0.589 3.411
17 O -0.540 6.540
18 C 0.021 3.979
19 C -0.221 4.221
20 S 0.178 5.822
21 C 0.134 3.866
22 C -0.143 4.143
23 C -0.199 4.199
24 C -0.027 4.027
25 O -0.174 6.174
26 C 0.044 3.956
27 N -0.443 5.443
28 C 0.142 3.858
29 H 0.251 0.749
30 H 0.046 0.954
31 H 0.043 0.957
32 H 0.062 0.938
33 H 0.060 0.940
34 H 0.068 0.932
35 H 0.071 0.929
36 H 0.411 0.589
37 H 0.192 0.808
38 H 0.156 0.844
39 H 0.209 0.791
40 H 0.219 0.781
41 H 0.019 0.981
42 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.130 -22.362 -9.491 28.103
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.206 4.206
3 Si 0.742 3.258
4 H -0.205 1.205
5 H -0.218 1.218
6 H -0.218 1.218
7 C -0.355 4.355
8 H 0.096 0.904
9 N -0.333 5.333
10 C 0.053 3.947
11 C -0.173 4.173
12 C -0.137 4.137
13 H 0.099 0.901
14 C 0.008 3.992
15 N -0.354 5.354
16 C 0.372 3.628
17 O -0.418 6.418
18 C -0.115 4.115
19 C -0.363 4.363
20 S 0.436 5.564
21 C -0.142 4.142
22 C -0.148 4.148
23 C -0.219 4.219
24 C -0.093 4.093
25 O -0.069 6.069
26 C -0.030 4.030
27 N -0.158 5.158
28 C 0.016 3.984
29 H 0.062 0.938
30 H 0.065 0.935
31 H 0.061 0.939
32 H 0.080 0.920
33 H 0.078 0.922
34 H 0.086 0.914
35 H 0.089 0.911
36 H 0.246 0.754
37 H 0.209 0.791
38 H 0.174 0.826
39 H 0.225 0.775
40 H 0.235 0.765
41 H 0.037 0.963
42 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 14.175 -22.700 -9.319 28.338
hybrid contribution -0.165 1.239 0.365 1.302
sum 14.010 -21.461 -8.954 27.148
Atomic orbital electron populations
1.69983 1.04870 1.24865 1.57281 1.24806 0.95732 0.97670 1.02368
0.86048 0.78711 0.83807 0.77224 1.20516 1.21772 1.21781 1.19107
0.90452 0.82436 1.43507 0.90436 1.44493 1.01739 0.99880 1.87158
1.21145 0.84337 0.88143 1.01108 1.22858 0.95374 0.99407 0.99708
1.22608 0.98651 0.91860 1.00595 0.90146 1.21488 0.86964 0.93358
0.97427 1.45905 1.30902 1.12578 1.45984 1.17097 0.82456 0.82054
0.81228 1.90811 1.53804 1.61307 1.35849 1.20160 0.99524 0.91794
1.00003 1.26485 1.02125 1.01094 1.06565 1.83774 1.23248 1.14381
1.34948 1.24765 0.96177 0.93202 1.00089 1.19026 0.98099 0.95262
1.02392 1.22748 0.96659 1.01348 1.01179 1.23929 0.99205 0.83308
1.02904 1.83959 1.34228 1.36088 1.52606 1.24476 0.89911 0.97993
0.90573 1.67011 1.04560 1.34456 1.09771 1.21574 0.94005 0.86092
0.96742 0.93836 0.93545 0.93889 0.91972 0.92175 0.91394 0.91066
0.75350 0.79120 0.82612 0.77462 0.76479 0.96332 0.94535
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.30 10.31 55.49 0.57 -26.73 16
2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16
3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16
4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16
8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16
9 N -0.61 -15.58 3.40 -170.09 -0.58 -16.16 16
10 C 0.18 4.32 5.37 -3.07 -0.02 4.30 16
11 C -0.13 -2.48 6.42 -24.90 -0.16 -2.64 16
12 C -0.12 -2.00 3.05 -88.49 -0.27 -2.27 16
13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
14 C 0.13 1.98 5.13 -4.05 -0.02 1.96 16
15 N -0.70 -10.10 5.50 -61.43 -0.34 -10.44 16
16 C 0.59 8.87 7.79 -12.59 -0.10 8.77 16
17 O -0.54 -9.45 16.65 5.25 0.09 -9.36 16
18 C 0.02 0.27 6.64 -84.92 -0.56 -0.29 16
19 C -0.22 -2.33 10.56 29.61 0.31 -2.02 16
20 S 0.18 1.44 23.07 -107.50 -2.48 -1.04 16
21 C 0.13 1.38 7.46 -14.44 -0.11 1.27 16
22 C -0.14 -1.28 6.32 -103.25 -0.65 -1.94 16
23 C -0.20 -1.31 11.04 -37.49 -0.41 -1.72 16
24 C -0.03 -0.15 12.04 29.35 0.35 0.20 16
25 O -0.17 -1.39 10.54 6.85 0.07 -1.32 16
26 C 0.04 0.38 12.05 29.95 0.36 0.74 16
27 N -0.44 -5.40 10.03 -8.11 -0.08 -5.48 16
28 C 0.14 2.92 6.65 -2.54 -0.02 2.91 16
29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16
30 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16
31 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16
32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
33 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16
34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
35 H 0.07 1.14 7.96 -51.93 -0.41 0.72 16
36 H 0.41 5.54 7.95 -40.82 -0.32 5.22 16
37 H 0.19 1.79 7.99 -52.49 -0.42 1.37 16
38 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16
39 H 0.21 0.36 8.06 -52.49 -0.42 -0.06 16
40 H 0.22 1.57 8.06 -52.49 -0.42 1.14 16
41 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16
42 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16
LS Contribution 374.27 15.07 5.64 5.64
Total: -1.00 -34.15 374.27 -8.94 -43.09
By element:
Atomic # 1 Polarization: 7.47 SS G_CDS: -5.26 Total: 2.21 kcal
Atomic # 6 Polarization: 3.91 SS G_CDS: -1.54 Total: 2.37 kcal
Atomic # 7 Polarization: -58.39 SS G_CDS: -0.42 Total: -58.81 kcal
Atomic # 8 Polarization: -10.84 SS G_CDS: 0.16 Total: -10.68 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal
Atomic # 16 Polarization: 1.44 SS G_CDS: -2.48 Total: -1.04 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -34.15 -8.94 -43.09 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001028872862.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.889 kcal
(2) G-P(sol) polarization free energy of solvation -34.154 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.799 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds