Wall clock time and date at job start Wed Apr 1 2020 04:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86793 * 119.99855 * 2 1 4 4 H 1.48504 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47219 * 300.00145 * 3 2 1 6 6 H 1.48505 * 109.47289 * 60.00015 * 3 2 1 7 7 C 1.38804 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00325 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64938 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.27309 * 178.92138 * 10 9 7 12 12 C 1.55154 * 102.94255 * 337.81219 * 11 10 9 13 13 H 1.08998 * 111.00564 * 277.38851 * 12 11 10 14 14 C 1.53002 * 111.00781 * 153.57228 * 12 11 10 15 15 N 1.46492 * 109.47578 * 174.99659 * 14 12 11 16 16 C 1.34772 * 120.00515 * 180.02562 * 15 14 12 17 17 O 1.21636 * 119.99531 * 0.02562 * 16 15 14 18 18 C 1.47270 * 120.00451 * 180.02562 * 16 15 14 19 19 C 1.35082 * 122.42866 * 180.02562 * 18 16 15 20 20 S 1.71008 * 109.13828 * 179.75259 * 19 18 16 21 21 C 1.75990 * 90.59421 * 0.33863 * 20 19 18 22 22 C 1.47876 * 125.31830 * 179.91703 * 21 20 19 23 23 C 1.46853 * 127.14267 * 359.82550 * 22 21 20 24 24 C 1.34307 * 106.00649 * 180.27496 * 23 22 21 25 25 O 1.34170 * 109.05378 * 359.77461 * 24 23 22 26 26 C 1.34011 * 110.80107 * 0.02562 * 25 24 23 27 27 N 1.29875 * 109.36019 * 359.65620 * 21 20 19 28 28 C 1.47424 * 125.64879 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99684 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.87927 * 59.50671 * 10 9 7 31 31 H 1.08997 * 109.88397 * 298.34382 * 10 9 7 32 32 H 1.08992 * 110.72311 * 219.44494 * 11 10 9 33 33 H 1.09002 * 110.86988 * 96.24573 * 11 10 9 34 34 H 1.09005 * 109.46754 * 54.99554 * 14 12 11 35 35 H 1.09001 * 109.47303 * 295.00489 * 14 12 11 36 36 H 0.97007 * 119.99647 * 0.02562 * 15 14 12 37 37 H 1.07997 * 125.43242 * 0.02562 * 19 18 16 38 38 H 1.08000 * 126.99745 * 0.08847 * 23 22 21 39 39 H 1.08001 * 125.46908 * 179.79875 * 24 23 22 40 40 H 1.08002 * 125.78535 * 179.97438 * 26 25 24 41 41 H 1.09004 * 110.36616 * 85.31026 * 28 9 7 42 42 H 1.08991 * 110.36925 * 322.98850 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0278 12 6 0.8524 -4.6560 -0.6116 13 1 0.8580 -4.5966 -1.6999 14 6 1.0372 -6.1008 -0.1432 15 7 2.2066 -6.6833 -0.8059 16 6 2.5643 -7.9563 -0.5455 17 8 1.9158 -8.6218 0.2395 18 6 3.7402 -8.5418 -1.2113 19 6 4.1421 -9.8118 -0.9871 20 16 5.5278 -10.1370 -1.9350 21 6 5.4894 -8.5019 -2.5850 22 6 6.4498 -7.9482 -3.5636 23 6 7.5978 -8.6374 -4.1668 24 6 8.1783 -7.7439 -4.9844 25 8 7.4906 -6.5929 -4.9344 26 6 6.4524 -6.6950 -4.0933 27 7 4.4825 -7.8594 -2.0750 28 6 1.9335 -3.7311 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 -0.5569 -2.0520 -0.8844 31 1 -0.5550 -2.0846 0.9011 32 1 -1.2979 -4.2514 -0.6785 33 1 -0.6341 -4.4206 0.9781 34 1 0.1497 -6.6810 -0.3960 35 1 1.1860 -6.1165 0.9365 36 1 2.7235 -6.1527 -1.4322 37 1 3.6620 -10.5118 -0.3194 38 1 7.9130 -9.6546 -3.9870 39 1 9.0572 -7.9233 -5.5859 40 1 5.7409 -5.9136 -3.8705 41 1 2.1660 -4.0423 1.0190 42 1 2.8332 -3.7403 -0.6145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028872862.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:02 Heat of formation + Delta-G solvation = 25.652726 kcal Electronic energy + Delta-G solvation = -26613.488648 eV Core-core repulsion = 22686.840936 eV Total energy + Delta-G solvation = -3926.647712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.35142 -41.54511 -39.90755 -39.10800 -36.12101 -34.49080 -34.30426 -31.86837 -31.56847 -30.13863 -29.98402 -27.71574 -26.74749 -25.42852 -23.92490 -22.62022 -22.06986 -21.61561 -21.20931 -20.19324 -19.79961 -18.83849 -18.44071 -17.85821 -17.06561 -16.97715 -16.77608 -16.65660 -16.34191 -15.99937 -15.61591 -15.32765 -15.12502 -14.67967 -14.52020 -14.21309 -13.98787 -13.83012 -13.81005 -13.45844 -13.20609 -13.07514 -13.02485 -12.77248 -12.66956 -11.99329 -11.95451 -11.87169 -11.57681 -11.56061 -11.48404 -11.27837 -11.00379 -10.71720 -10.61372 -10.21187 -9.96684 -9.25015 -8.90234 -7.85387 -5.21029 -0.75901 0.10323 0.46688 0.47909 1.05165 1.45580 1.46630 1.57077 1.71916 2.09269 2.17212 2.31561 2.49191 2.77544 3.32783 3.58379 3.64048 3.78533 3.84984 3.99805 4.00985 4.05894 4.13497 4.19465 4.42478 4.55172 4.60990 4.67520 4.75688 4.78721 4.86292 4.90093 5.03168 5.07156 5.13001 5.27866 5.40526 5.42593 5.45178 5.67811 5.77573 6.07420 6.19865 6.23060 6.53008 7.04534 7.10368 7.77491 8.42030 9.25353 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010251 B = 0.002582 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.803241 B =10843.796211 C =13220.494242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.121 4.121 12 C -0.095 4.095 13 H 0.088 0.912 14 C 0.143 3.857 15 N -0.701 5.701 16 C 0.588 3.412 17 O -0.570 6.570 18 C -0.006 4.006 19 C -0.228 4.228 20 S 0.261 5.739 21 C 0.116 3.884 22 C -0.162 4.162 23 C -0.208 4.208 24 C -0.020 4.020 25 O -0.186 6.186 26 C 0.030 3.970 27 N -0.464 5.464 28 C 0.139 3.861 29 H 0.246 0.754 30 H 0.013 0.987 31 H 0.005 0.995 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.415 0.585 37 H 0.200 0.800 38 H 0.178 0.822 39 H 0.247 0.753 40 H 0.220 0.780 41 H 0.018 0.982 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.323 -24.434 -10.587 31.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.371 4.371 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.106 0.894 14 C 0.019 3.981 15 N -0.351 5.351 16 C 0.373 3.627 17 O -0.451 6.451 18 C -0.141 4.141 19 C -0.371 4.371 20 S 0.521 5.479 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.228 4.228 24 C -0.085 4.085 25 O -0.081 6.081 26 C -0.043 4.043 27 N -0.180 5.180 28 C 0.014 3.986 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.024 0.976 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.251 0.749 37 H 0.217 0.783 38 H 0.195 0.805 39 H 0.263 0.737 40 H 0.236 0.764 41 H 0.035 0.965 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.408 -24.802 -10.433 31.516 hybrid contribution -0.728 1.794 0.675 2.050 sum 15.681 -23.009 -9.759 29.505 Atomic orbital electron populations 1.70205 1.06307 1.25184 1.58420 1.25670 0.96653 1.01072 1.02681 0.85001 0.78196 0.79369 0.76717 1.18938 1.21736 1.22031 1.19502 0.91001 0.83772 1.42784 0.90034 1.44816 1.02556 1.01129 1.86985 1.20925 0.83721 0.91808 0.97741 1.22722 0.96928 0.94948 1.01400 1.22402 0.96202 0.92232 1.00668 0.89396 1.21284 0.87891 0.91954 0.96984 1.45843 1.30685 1.12672 1.45904 1.17391 0.82787 0.81789 0.80763 1.90782 1.55039 1.61955 1.37281 1.19927 0.99833 0.92796 1.01590 1.26784 1.03127 1.00547 1.06619 1.83439 1.20474 1.11590 1.32354 1.25091 0.95932 0.94748 1.00230 1.19280 0.98833 0.95938 1.02633 1.23043 0.95948 1.02511 1.01280 1.24742 0.99386 0.82081 1.02312 1.83965 1.34279 1.37316 1.52519 1.24601 0.90414 0.98288 0.91032 1.66965 1.05385 1.35357 1.10286 1.21728 0.95260 0.84604 0.97040 0.94420 0.96832 0.97645 0.89443 0.90832 0.90123 0.91731 0.74862 0.78301 0.80469 0.73689 0.76401 0.96462 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.26 10.31 21.65 0.22 -58.04 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 3 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.24 -13.80 10.28 84.03 0.86 -12.93 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -32.88 3.40 -692.05 -2.35 -35.23 16 10 C 0.18 9.18 5.37 86.73 0.47 9.65 16 11 C -0.12 -4.38 6.42 31.78 0.20 -4.17 16 12 C -0.10 -3.15 3.05 -9.41 -0.03 -3.17 16 13 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 14 C 0.14 4.11 5.13 86.38 0.44 4.56 16 15 N -0.70 -19.63 5.50 -466.52 -2.56 -22.19 16 16 C 0.59 17.46 7.79 86.62 0.67 18.14 16 17 O -0.57 -19.73 16.65 -4.15 -0.07 -19.80 16 18 C -0.01 -0.14 6.64 40.65 0.27 0.13 16 19 C -0.23 -4.50 10.56 67.09 0.71 -3.79 16 20 S 0.26 3.60 23.07 -56.49 -1.30 2.30 16 21 C 0.12 2.24 7.46 87.54 0.65 2.89 16 22 C -0.16 -2.70 6.32 -18.98 -0.12 -2.82 16 23 C -0.21 -2.21 11.04 23.63 0.26 -1.95 16 24 C -0.02 -0.17 12.04 66.92 0.81 0.63 16 25 O -0.19 -2.73 10.54 1.58 0.02 -2.71 16 26 C 0.03 0.50 12.05 67.31 0.81 1.31 16 27 N -0.46 -11.06 10.03 -179.57 -1.80 -12.86 16 28 C 0.14 5.68 6.65 86.85 0.58 6.26 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.01 0.75 7.38 -2.38 -0.02 0.73 16 31 H 0.01 0.30 7.50 -2.39 -0.02 0.28 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.07 2.48 8.04 -2.39 -0.02 2.46 16 34 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.06 1.99 7.96 -2.39 -0.02 1.97 16 36 H 0.41 10.97 7.95 -92.70 -0.74 10.23 16 37 H 0.20 3.46 7.99 -2.91 -0.02 3.44 16 38 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.25 -0.10 8.06 -2.91 -0.02 -0.12 16 40 H 0.22 3.25 8.06 -2.91 -0.02 3.23 16 41 H 0.02 0.73 7.91 -2.38 -0.02 0.71 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -76.13 374.27 1.56 -74.57 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.33 Total: 14.28 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 7.06 Total: 11.25 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -6.49 Total: -128.33 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.05 Total: -22.51 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.30 Total: 2.30 kcal Total: -76.13 1.56 -74.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028872862.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.221 kcal (2) G-P(sol) polarization free energy of solvation -76.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds