Wall clock time and date at job start Wed Apr 1 2020 04:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00202 * 2 1 4 4 H 1.48491 * 109.47052 * 274.14850 * 3 2 1 5 5 H 1.48501 * 109.47100 * 34.15490 * 3 2 1 6 6 H 1.48500 * 109.46966 * 154.14767 * 3 2 1 7 7 C 1.38817 * 119.99441 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99659 * 197.02231 * 7 2 1 9 9 N 1.36940 * 120.00076 * 17.03427 * 7 2 1 10 10 C 1.47148 * 120.98101 * 26.60229 * 9 7 2 11 11 C 1.53296 * 108.38210 * 129.45030 * 10 9 7 12 12 O 1.42956 * 109.27125 * 52.27337 * 11 10 9 13 13 C 1.42968 * 114.16527 * 297.50801 * 12 11 10 14 14 H 1.09003 * 109.51019 * 302.54111 * 13 12 11 15 15 C 1.52999 * 109.50759 * 182.44475 * 13 12 11 16 16 N 1.46502 * 109.47155 * 65.10091 * 15 13 12 17 17 C 1.34777 * 119.99806 * 180.02562 * 16 15 13 18 18 O 1.21623 * 120.00241 * 359.97438 * 17 16 15 19 19 C 1.47200 * 119.99878 * 179.97438 * 17 16 15 20 20 C 1.33794 * 124.64547 * 179.97438 * 19 17 16 21 21 C 1.40105 * 115.49630 * 179.97438 * 20 19 17 22 22 C 1.41711 * 129.98941 * 180.02562 * 21 20 19 23 23 C 1.36043 * 119.33889 * 179.97438 * 22 21 20 24 24 N 1.32307 * 121.57843 * 0.02562 * 23 22 21 25 25 C 1.31357 * 122.05396 * 359.97438 * 24 23 22 26 26 C 1.39730 * 120.60019 * 359.97438 * 25 24 23 27 27 S 1.75527 * 124.64998 * 359.69871 * 19 17 16 28 28 C 1.47157 * 120.97829 * 206.58637 * 9 7 2 29 29 H 0.97000 * 119.99924 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.67864 * 249.16784 * 10 9 7 31 31 H 1.08991 * 109.68366 * 9.68408 * 10 9 7 32 32 H 1.08994 * 109.51364 * 172.22810 * 11 10 9 33 33 H 1.09001 * 109.50665 * 292.37207 * 11 10 9 34 34 H 1.08996 * 109.47546 * 305.09762 * 15 13 12 35 35 H 1.09000 * 109.47018 * 185.10138 * 15 13 12 36 36 H 0.96996 * 120.00670 * 359.97438 * 16 15 13 37 37 H 1.07993 * 122.25177 * 359.97438 * 20 19 17 38 38 H 1.07998 * 120.33410 * 359.97438 * 22 21 20 39 39 H 1.07998 * 119.21088 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.70107 * 179.97438 * 25 24 23 41 41 H 1.08992 * 109.68219 * 110.82741 * 28 9 7 42 42 H 1.08999 * 109.70809 * 350.28911 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4100 2.0969 -1.3963 5 1 1.4944 2.6257 0.7861 6 1 3.5889 1.4163 0.6105 7 6 2.0102 -1.2023 0.0005 8 1 3.0546 -1.2227 0.2743 9 7 1.3704 -2.3623 -0.3464 10 6 0.2045 -2.3451 -1.2439 11 6 0.4384 -3.3696 -2.3600 12 8 0.7736 -4.6320 -1.7789 13 6 1.9838 -4.6230 -1.0177 14 1 2.8085 -4.2924 -1.6490 15 6 2.2712 -6.0332 -0.4985 16 7 2.5345 -6.9259 -1.6299 17 6 2.8135 -8.2263 -1.4114 18 8 2.8472 -8.6585 -0.2751 19 6 3.0776 -9.1234 -2.5482 20 6 3.3636 -10.4258 -2.4389 21 6 3.5809 -11.0991 -3.6482 22 6 3.8986 -12.4590 -3.8890 23 6 4.0646 -12.8881 -5.1693 24 7 3.9371 -12.0656 -6.1977 25 6 3.6440 -10.7946 -6.0418 26 6 3.4535 -10.2601 -4.7649 27 16 3.0536 -8.6326 -4.2333 28 6 1.8289 -3.6629 0.1672 29 1 -0.4850 0.8400 0.0004 30 1 -0.6930 -2.6097 -0.6848 31 1 0.0882 -1.3511 -1.6756 32 1 -0.4685 -3.4723 -2.9557 33 1 1.2569 -3.0338 -2.9966 34 1 1.4086 -6.3980 0.0591 35 1 3.1427 -6.0089 0.1557 36 1 2.5074 -6.5814 -2.5362 37 1 3.4230 -10.9245 -1.4829 38 1 4.0078 -13.1479 -3.0645 39 1 4.3062 -13.9250 -5.3505 40 1 3.5494 -10.1570 -6.9084 41 1 1.0950 -4.0601 0.8683 42 1 2.7887 -3.5420 0.6696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035400275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:47 Heat of formation + Delta-G solvation = 5.214554 kcal Electronic energy + Delta-G solvation = -26674.953145 eV Core-core repulsion = 22747.419167 eV Total energy + Delta-G solvation = -3927.533978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89795 -39.90098 -38.55016 -36.50030 -35.06542 -34.38174 -31.94767 -31.79782 -31.11646 -30.46241 -27.73097 -26.21015 -24.92928 -24.30630 -23.24530 -22.32309 -21.58547 -20.65978 -19.79272 -18.89544 -17.34969 -17.03458 -16.80992 -16.53028 -16.18696 -15.76585 -15.27451 -15.08612 -14.94554 -14.69274 -14.47002 -14.39403 -14.27527 -13.86941 -13.48817 -13.25556 -13.16471 -12.87511 -12.67958 -12.27105 -12.26639 -11.66046 -11.35762 -11.18054 -10.91819 -10.79983 -10.49871 -10.44109 -10.38090 -10.29524 -10.15248 -10.04428 -9.73752 -9.57090 -9.18734 -9.14281 -8.60227 -8.36008 -6.81999 -5.90036 -3.34254 -0.26644 0.51583 0.83829 1.30319 1.53860 2.83125 2.87723 3.27764 3.30622 3.37963 3.39420 3.94628 4.07357 4.14924 4.24110 4.37765 4.40056 4.56361 4.89795 5.00978 5.04519 5.13021 5.26707 5.29435 5.37351 5.43189 5.57683 5.68469 5.70654 5.73300 5.92268 6.05421 6.06429 6.16267 6.29505 6.31970 6.41219 6.67670 7.02953 7.23987 7.41745 7.45222 7.65503 7.76854 7.89721 8.27444 9.05367 9.67866 10.24576 11.18158 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.026428 B = 0.001984 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.235120 B =14112.552641 C =14545.484001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.063 3.937 14 H 0.060 0.940 15 C 0.130 3.870 16 N -0.710 5.710 17 C 0.583 3.417 18 O -0.524 6.524 19 C -0.199 4.199 20 C -0.057 4.057 21 C -0.044 4.044 22 C -0.119 4.119 23 C 0.077 3.923 24 N -0.467 5.467 25 C 0.161 3.839 26 C -0.200 4.200 27 S 0.166 5.834 28 C 0.122 3.878 29 H 0.255 0.745 30 H 0.029 0.971 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.402 0.598 37 H 0.161 0.839 38 H 0.143 0.857 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.031 0.969 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.825 -22.069 -10.970 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.003 3.997 14 H 0.078 0.922 15 C 0.007 3.993 16 N -0.360 5.360 17 C 0.367 3.633 18 O -0.402 6.402 19 C -0.319 4.319 20 C -0.090 4.090 21 C -0.060 4.060 22 C -0.141 4.141 23 C -0.072 4.072 24 N -0.176 5.176 25 C -0.010 4.010 26 C -0.319 4.319 27 S 0.431 5.569 28 C -0.005 4.005 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.237 0.763 37 H 0.178 0.822 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.182 0.818 41 H 0.049 0.951 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.467 -21.323 -11.637 25.138 hybrid contribution 0.569 0.363 1.165 1.347 sum 7.035 -20.960 -10.471 24.463 Atomic orbital electron populations 1.70037 1.05284 1.25723 1.53517 1.25070 0.95367 0.98550 1.00635 0.86212 0.79134 0.83401 0.77655 1.21375 1.21658 1.20306 1.19209 0.92690 0.84422 1.42301 0.91280 1.44063 1.34151 1.01016 1.52472 1.21443 0.89265 0.98264 0.89686 1.23337 0.99135 0.84797 0.96548 1.87790 1.41679 1.32773 1.68705 1.22826 0.87825 0.93584 0.95429 0.92211 1.21546 1.02098 0.87762 0.87937 1.45855 1.70396 1.08453 1.11312 1.17042 0.77513 0.81661 0.87109 1.90838 1.51801 1.75572 1.21969 1.24069 1.11196 0.98708 0.97952 1.20162 0.97448 0.92392 0.98983 1.18358 1.00948 0.94837 0.91835 1.21811 0.99412 0.93715 0.99185 1.22187 0.97188 0.99902 0.87910 1.67724 1.11548 1.03503 1.34871 1.22379 0.93463 0.91589 0.93599 1.24157 1.09210 0.99216 0.99294 1.84289 1.70742 1.05542 0.96289 1.21430 0.99083 0.87212 0.92784 0.93454 0.95287 0.88785 0.89934 0.94037 0.90075 0.89553 0.76306 0.82161 0.83892 0.82142 0.81776 0.95121 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 11.17 55.49 0.62 -24.87 16 2 C 0.00 0.07 4.94 -17.43 -0.09 -0.01 16 3 Si 0.91 21.07 29.59 -169.99 -5.03 16.04 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.82 9.64 -15.06 -0.15 -6.96 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.40 3.05 -171.84 -0.52 -14.93 16 10 C 0.14 3.21 5.44 -3.54 -0.02 3.19 16 11 C 0.04 0.73 6.98 37.31 0.26 0.99 16 12 O -0.39 -6.99 10.33 -35.23 -0.36 -7.36 16 13 C 0.06 1.05 2.81 -26.58 -0.07 0.98 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.85 5.34 -4.04 -0.02 1.83 16 16 N -0.71 -9.15 5.50 -61.46 -0.34 -9.49 16 17 C 0.58 7.83 7.80 -12.62 -0.10 7.73 16 18 O -0.52 -8.56 16.73 5.26 0.09 -8.48 16 19 C -0.20 -2.18 6.33 -37.50 -0.24 -2.42 16 20 C -0.06 -0.57 9.81 -40.44 -0.40 -0.97 16 21 C -0.04 -0.40 5.91 -107.11 -0.63 -1.03 16 22 C -0.12 -0.85 10.13 -39.04 -0.40 -1.24 16 23 C 0.08 0.56 11.06 -18.14 -0.20 0.35 16 24 N -0.47 -4.19 10.34 -13.41 -0.14 -4.33 16 25 C 0.16 1.33 11.24 -17.20 -0.19 1.13 16 26 C -0.20 -1.81 6.54 -38.27 -0.25 -2.06 16 27 S 0.17 1.48 22.26 -107.50 -2.39 -0.91 16 28 C 0.12 2.45 6.02 -3.53 -0.02 2.43 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.40 4.64 7.52 -40.82 -0.31 4.34 16 37 H 0.16 1.46 7.96 -52.49 -0.42 1.04 16 38 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -32.05 367.27 -10.29 -42.34 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.24 Total: 2.51 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -2.51 Total: 3.94 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.38 Total: -53.62 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.28 Total: -15.83 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.39 Total: -0.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.05 -10.29 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035400275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.557 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds