Wall clock time and date at job start Wed Apr 1 2020 04:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00202 * 2 1 4 4 H 1.48491 * 109.47052 * 274.14850 * 3 2 1 5 5 H 1.48501 * 109.47100 * 34.15490 * 3 2 1 6 6 H 1.48500 * 109.46966 * 154.14767 * 3 2 1 7 7 C 1.38817 * 119.99441 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99659 * 197.02231 * 7 2 1 9 9 N 1.36940 * 120.00076 * 17.03427 * 7 2 1 10 10 C 1.47148 * 120.98101 * 26.60229 * 9 7 2 11 11 C 1.53296 * 108.38210 * 129.45030 * 10 9 7 12 12 O 1.42956 * 109.27125 * 52.27337 * 11 10 9 13 13 C 1.42968 * 114.16527 * 297.50801 * 12 11 10 14 14 H 1.09003 * 109.51019 * 302.54111 * 13 12 11 15 15 C 1.52999 * 109.50759 * 182.44475 * 13 12 11 16 16 N 1.46502 * 109.47155 * 65.10091 * 15 13 12 17 17 C 1.34777 * 119.99806 * 180.02562 * 16 15 13 18 18 O 1.21623 * 120.00241 * 359.97438 * 17 16 15 19 19 C 1.47200 * 119.99878 * 179.97438 * 17 16 15 20 20 C 1.33794 * 124.64547 * 179.97438 * 19 17 16 21 21 C 1.40105 * 115.49630 * 179.97438 * 20 19 17 22 22 C 1.41711 * 129.98941 * 180.02562 * 21 20 19 23 23 C 1.36043 * 119.33889 * 179.97438 * 22 21 20 24 24 N 1.32307 * 121.57843 * 0.02562 * 23 22 21 25 25 C 1.31357 * 122.05396 * 359.97438 * 24 23 22 26 26 C 1.39730 * 120.60019 * 359.97438 * 25 24 23 27 27 S 1.75527 * 124.64998 * 359.69871 * 19 17 16 28 28 C 1.47157 * 120.97829 * 206.58637 * 9 7 2 29 29 H 0.97000 * 119.99924 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.67864 * 249.16784 * 10 9 7 31 31 H 1.08991 * 109.68366 * 9.68408 * 10 9 7 32 32 H 1.08994 * 109.51364 * 172.22810 * 11 10 9 33 33 H 1.09001 * 109.50665 * 292.37207 * 11 10 9 34 34 H 1.08996 * 109.47546 * 305.09762 * 15 13 12 35 35 H 1.09000 * 109.47018 * 185.10138 * 15 13 12 36 36 H 0.96996 * 120.00670 * 359.97438 * 16 15 13 37 37 H 1.07993 * 122.25177 * 359.97438 * 20 19 17 38 38 H 1.07998 * 120.33410 * 359.97438 * 22 21 20 39 39 H 1.07998 * 119.21088 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.70107 * 179.97438 * 25 24 23 41 41 H 1.08992 * 109.68219 * 110.82741 * 28 9 7 42 42 H 1.08999 * 109.70809 * 350.28911 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4100 2.0969 -1.3963 5 1 1.4944 2.6257 0.7861 6 1 3.5889 1.4163 0.6105 7 6 2.0102 -1.2023 0.0005 8 1 3.0546 -1.2227 0.2743 9 7 1.3704 -2.3623 -0.3464 10 6 0.2045 -2.3451 -1.2439 11 6 0.4384 -3.3696 -2.3600 12 8 0.7736 -4.6320 -1.7789 13 6 1.9838 -4.6230 -1.0177 14 1 2.8085 -4.2924 -1.6490 15 6 2.2712 -6.0332 -0.4985 16 7 2.5345 -6.9259 -1.6299 17 6 2.8135 -8.2263 -1.4114 18 8 2.8472 -8.6585 -0.2751 19 6 3.0776 -9.1234 -2.5482 20 6 3.3636 -10.4258 -2.4389 21 6 3.5809 -11.0991 -3.6482 22 6 3.8986 -12.4590 -3.8890 23 6 4.0646 -12.8881 -5.1693 24 7 3.9371 -12.0656 -6.1977 25 6 3.6440 -10.7946 -6.0418 26 6 3.4535 -10.2601 -4.7649 27 16 3.0536 -8.6326 -4.2333 28 6 1.8289 -3.6629 0.1672 29 1 -0.4850 0.8400 0.0004 30 1 -0.6930 -2.6097 -0.6848 31 1 0.0882 -1.3511 -1.6756 32 1 -0.4685 -3.4723 -2.9557 33 1 1.2569 -3.0338 -2.9966 34 1 1.4086 -6.3980 0.0591 35 1 3.1427 -6.0089 0.1557 36 1 2.5074 -6.5814 -2.5362 37 1 3.4230 -10.9245 -1.4829 38 1 4.0078 -13.1479 -3.0645 39 1 4.3062 -13.9250 -5.3505 40 1 3.5494 -10.1570 -6.9084 41 1 1.0950 -4.0601 0.8683 42 1 2.7887 -3.5420 0.6696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035400275.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:46 Heat of formation + Delta-G solvation = -16.209677 kcal Electronic energy + Delta-G solvation = -26675.882169 eV Core-core repulsion = 22747.419167 eV Total energy + Delta-G solvation = -3928.463002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56114 -40.96209 -40.01784 -37.24297 -36.53525 -35.88876 -33.42936 -32.63543 -32.45913 -31.47769 -29.30921 -27.61233 -25.92107 -25.10022 -24.87795 -23.55505 -22.60606 -21.75618 -21.18041 -19.76971 -18.88961 -18.03788 -17.72532 -17.52150 -17.32927 -16.96146 -16.61771 -16.35354 -16.12344 -15.67589 -15.50935 -15.48527 -15.38141 -15.03970 -14.87742 -14.67619 -14.52097 -14.06851 -13.89068 -13.24524 -13.13552 -13.02549 -12.89987 -12.71346 -12.54248 -12.17720 -12.08949 -12.03996 -11.88995 -11.50272 -11.30404 -11.03352 -10.81655 -10.76077 -10.56411 -10.45371 -10.13968 -8.98624 -8.76722 -7.92331 -5.39894 -0.99426 -0.05580 0.14267 0.60255 0.79653 1.46751 1.47800 1.57165 1.81631 1.91016 2.47009 2.68408 2.73942 3.22744 3.33075 3.45910 3.47202 3.58829 3.78883 3.81928 3.92517 4.02647 4.21677 4.31475 4.44501 4.46930 4.49487 4.56915 4.59595 4.65616 4.70486 4.73073 4.88315 4.93083 5.02876 5.06396 5.15153 5.22778 5.52786 5.54877 5.60769 6.21996 6.23484 6.31610 6.84304 6.87186 7.05178 7.73131 8.26694 9.13794 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.026428 B = 0.001984 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.235120 B =14112.552641 C =14545.484001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.612 5.612 10 C 0.142 3.858 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.077 3.923 14 H 0.071 0.929 15 C 0.140 3.860 16 N -0.705 5.705 17 C 0.586 3.414 18 O -0.560 6.560 19 C -0.226 4.226 20 C -0.047 4.047 21 C -0.063 4.063 22 C -0.114 4.114 23 C 0.072 3.928 24 N -0.484 5.484 25 C 0.153 3.847 26 C -0.208 4.208 27 S 0.188 5.812 28 C 0.117 3.883 29 H 0.251 0.749 30 H -0.001 1.001 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.410 0.590 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.190 0.810 40 H 0.185 0.815 41 H 0.020 0.980 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -23.704 -12.485 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.310 6.310 13 C 0.017 3.983 14 H 0.089 0.911 15 C 0.016 3.984 16 N -0.355 5.355 17 C 0.372 3.628 18 O -0.440 6.440 19 C -0.346 4.346 20 C -0.080 4.080 21 C -0.078 4.078 22 C -0.135 4.135 23 C -0.077 4.077 24 N -0.193 5.193 25 C -0.018 4.018 26 C -0.327 4.327 27 S 0.454 5.546 28 C -0.009 4.009 29 H 0.061 0.939 30 H 0.017 0.983 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.246 0.754 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.207 0.793 40 H 0.202 0.798 41 H 0.037 0.963 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.960 -22.975 -13.182 27.658 hybrid contribution 0.126 0.736 1.635 1.797 sum 8.086 -22.239 -11.547 26.330 Atomic orbital electron populations 1.70193 1.06730 1.26058 1.55136 1.25846 0.96104 1.01669 1.01018 0.85191 0.78133 0.79231 0.77509 1.20973 1.22372 1.19164 1.19558 0.93062 0.85491 1.41386 0.90873 1.44338 1.34212 1.01942 1.53181 1.21311 0.88073 0.98358 0.90577 1.23166 1.00847 0.83522 0.94821 1.87806 1.42321 1.32173 1.68657 1.22676 0.87679 0.94037 0.93887 0.91089 1.21338 1.02194 0.86572 0.88312 1.45728 1.70213 1.08313 1.11277 1.17287 0.76540 0.81690 0.87319 1.90813 1.53459 1.76160 1.23552 1.23852 1.13490 0.98835 0.98419 1.20304 0.95987 0.92130 0.99611 1.18530 1.01909 0.95942 0.91423 1.22141 0.98010 0.93208 1.00166 1.22710 0.96352 1.01016 0.87583 1.67776 1.11798 1.03927 1.35836 1.22731 0.93235 0.91807 0.93983 1.24324 1.09288 0.99285 0.99772 1.84103 1.70614 1.05429 0.94431 1.21590 0.98983 0.86197 0.94160 0.93947 0.98276 0.91480 0.87291 0.92940 0.91129 0.88454 0.75373 0.81808 0.81190 0.79308 0.79809 0.96252 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.29 11.17 21.65 0.24 -54.04 16 2 C -0.05 -2.77 4.94 84.86 0.42 -2.35 16 3 Si 0.97 43.60 29.59 68.60 2.03 45.63 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.27 -14.12 9.64 84.03 0.81 -13.31 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 9 N -0.61 -29.96 3.05 -697.56 -2.13 -32.09 16 10 C 0.14 6.70 5.44 86.35 0.47 7.17 16 11 C 0.05 1.92 6.98 72.08 0.50 2.43 16 12 O -0.39 -13.42 10.33 -148.98 -1.54 -14.96 16 13 C 0.08 2.45 2.81 30.69 0.09 2.54 16 14 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 15 C 0.14 3.84 5.34 86.38 0.46 4.31 16 16 N -0.70 -17.31 5.50 -466.60 -2.57 -19.88 16 17 C 0.59 15.33 7.80 86.60 0.68 16.00 16 18 O -0.56 -18.17 16.73 -4.11 -0.07 -18.24 16 19 C -0.23 -4.74 6.33 23.62 0.15 -4.59 16 20 C -0.05 -0.88 9.81 21.71 0.21 -0.67 16 21 C -0.06 -1.03 5.91 -21.48 -0.13 -1.16 16 22 C -0.11 -1.32 10.13 22.62 0.23 -1.09 16 23 C 0.07 0.85 11.06 84.11 0.93 1.78 16 24 N -0.48 -7.64 10.34 -196.33 -2.03 -9.67 16 25 C 0.15 2.24 11.24 85.12 0.96 3.19 16 26 C -0.21 -3.41 6.54 23.12 0.15 -3.26 16 27 S 0.19 3.08 22.26 -56.49 -1.26 1.82 16 28 C 0.12 4.66 6.02 86.35 0.52 5.18 16 29 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 31 H 0.07 3.50 6.17 -2.39 -0.01 3.49 16 32 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.41 8.77 7.52 -92.71 -0.70 8.07 16 37 H 0.16 2.82 7.96 -2.91 -0.02 2.80 16 38 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 2.78 7.96 -2.39 -0.02 2.77 16 Total: -1.00 -69.72 367.27 -0.50 -70.21 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.37 Total: 15.05 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 6.45 Total: 16.16 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -6.48 Total: -115.67 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.61 Total: -33.20 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.26 Total: 1.82 kcal Total: -69.72 -0.50 -70.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035400275.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.005 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds