Wall clock time and date at job start Wed Apr 1 2020 05:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 110.64382 * 2 1 4 4 C 1.34783 * 119.99816 * 298.31323 * 3 2 1 5 5 O 1.21609 * 119.99997 * 0.02562 * 4 3 2 6 6 C 1.47297 * 119.99525 * 179.97438 * 4 3 2 7 7 C 1.34224 * 124.78751 * 180.02562 * 6 4 3 8 8 C 1.39563 * 115.53056 * 180.30867 * 7 6 4 9 9 C 1.47754 * 129.59834 * 179.72631 * 8 7 6 10 10 C 1.34060 * 119.56006 * 180.02562 * 9 8 7 11 11 N 1.36556 * 121.42463 * 359.97438 * 10 9 8 12 12 H 0.96993 * 119.15957 * 180.02562 * 11 10 9 13 13 C 1.34307 * 121.67639 * 359.47784 * 11 10 9 14 14 O 1.21953 * 119.68912 * 179.97438 * 13 11 10 15 15 C 1.39396 * 112.90188 * 359.50856 * 8 7 6 16 16 S 1.75559 * 124.79630 * 0.03982 * 6 4 3 17 17 C 1.55156 * 110.87450 * 123.25561 * 2 1 3 18 18 C 1.54903 * 101.58342 * 153.93399 * 17 2 1 19 19 N 1.47429 * 104.83441 * 322.98400 * 18 17 2 20 20 C 1.36934 * 125.65240 * 204.09627 * 19 18 17 21 21 H 1.07997 * 120.00288 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99754 * 0.04185 * 20 19 18 23 23 N 1.31622 * 120.00036 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99748 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46923 * 90.00222 * 24 22 20 26 26 H 1.48501 * 109.46841 * 209.99820 * 24 22 20 27 27 H 1.48494 * 109.47320 * 329.99827 * 24 22 20 28 28 C 1.47024 * 108.69566 * 24.13021 * 19 18 17 29 29 H 1.08993 * 109.47578 * 59.29419 * 1 2 3 30 30 H 1.09007 * 109.47629 * 179.30088 * 1 2 3 31 31 H 1.09007 * 109.46685 * 299.29606 * 1 2 3 32 32 H 0.97001 * 120.00244 * 118.31512 * 3 2 1 33 33 H 1.08002 * 122.23117 * 0.02909 * 7 6 4 34 34 H 1.08004 * 120.21523 * 359.97403 * 9 8 7 35 35 H 1.07999 * 119.28681 * 180.02562 * 10 9 8 36 36 H 1.09010 * 111.00024 * 272.00665 * 17 2 1 37 37 H 1.08994 * 111.00837 * 35.85371 * 17 2 1 38 38 H 1.09007 * 110.36403 * 204.14917 * 18 17 2 39 39 H 1.08999 * 110.37345 * 81.82640 * 18 17 2 40 40 H 0.97004 * 119.99620 * 180.02562 * 23 22 20 41 41 H 1.09000 * 109.87982 * 239.51706 * 28 19 18 42 42 H 1.09007 * 110.00528 * 118.43417 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7659 2.1967 -1.0276 5 8 1.0837 1.8039 -1.9546 6 6 2.2848 3.5752 -1.0273 7 6 2.0651 4.4764 -1.9975 8 6 2.6556 5.7259 -1.8028 9 6 2.6220 6.9276 -2.6618 10 6 3.2696 8.0357 -2.2746 11 7 3.9629 8.0810 -1.0990 12 1 4.4193 8.9001 -0.8508 13 6 4.0199 7.0239 -0.2725 14 8 4.6502 7.1042 0.7684 15 6 3.3685 5.8087 -0.6077 16 16 3.2781 4.2715 0.2418 17 6 2.0828 -0.7950 1.2123 18 6 3.4673 -1.2456 0.6835 19 7 3.2470 -1.5462 -0.7429 20 6 4.0075 -2.3902 -1.5074 21 1 3.7631 -2.5439 -2.5481 22 6 5.0924 -3.0483 -0.9448 23 7 5.3905 -2.8608 0.3235 24 14 6.1304 -4.1990 -1.9879 25 1 7.2371 -3.4341 -2.6168 26 1 6.6949 -5.2713 -1.1296 27 1 5.2842 -4.8062 -3.0464 28 6 2.0759 -0.7892 -1.2087 29 1 -0.3634 0.5247 -0.8835 30 1 -0.3634 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8963 32 1 2.5903 1.6843 0.7395 33 1 1.4747 4.2483 -2.8726 34 1 2.0799 6.9130 -3.5958 35 1 3.2417 8.9117 -2.9057 36 1 2.1887 -0.1516 2.0859 37 1 1.4515 -1.6547 1.4365 38 1 3.8030 -2.1380 1.2118 39 1 4.1955 -0.4421 0.7937 40 1 6.1489 -3.3204 0.7165 41 1 1.3139 -1.4754 -1.5782 42 1 2.3685 -0.0993 -2.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046435674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:44 Heat of formation + Delta-G solvation = 15.188605 kcal Electronic energy + Delta-G solvation = -27616.341746 eV Core-core repulsion = 23689.240275 eV Total energy + Delta-G solvation = -3927.101471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.26725 -40.08762 -38.00920 -37.23545 -36.21036 -34.10032 -32.22752 -31.38666 -30.25543 -29.71931 -28.69858 -25.94063 -25.62600 -24.09792 -23.55813 -21.99067 -20.70457 -20.31908 -19.32797 -19.20041 -18.32951 -17.07051 -16.88707 -16.70857 -15.90270 -15.80783 -15.61641 -14.91503 -14.79486 -14.62585 -14.36648 -13.74804 -13.73199 -13.35579 -13.02991 -12.94327 -12.75291 -12.34855 -12.28366 -12.24294 -12.02392 -11.76518 -11.58671 -11.17190 -10.94158 -10.85786 -10.58924 -10.49407 -10.38302 -10.08340 -10.06581 -9.72380 -9.69243 -9.47480 -9.19188 -8.77695 -8.63492 -8.06094 -6.80943 -5.64180 -3.04727 -0.15989 1.00180 1.08792 1.56735 1.89340 2.69822 3.05894 3.14349 3.29654 3.41963 3.46990 3.48841 4.10998 4.27521 4.50314 4.59574 4.62395 4.82943 5.09804 5.22671 5.35114 5.43154 5.47828 5.54391 5.61635 5.70579 5.76587 5.89333 5.96589 6.12241 6.18277 6.29443 6.30201 6.41591 6.46377 6.55927 6.64356 6.79403 7.05186 7.44842 7.58821 7.59398 7.65556 7.83519 8.24665 8.36446 9.23886 9.84552 10.49020 11.40204 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002830 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.143076 B = 9892.152584 C =10517.369532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 N -0.699 5.699 4 C 0.587 3.413 5 O -0.515 6.515 6 C -0.207 4.207 7 C -0.072 4.072 8 C -0.002 4.002 9 C -0.172 4.172 10 C 0.105 3.895 11 N -0.619 5.619 12 H 0.419 0.581 13 C 0.570 3.430 14 O -0.539 6.539 15 C -0.279 4.279 16 S 0.254 5.746 17 C -0.147 4.147 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.218 4.218 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.136 3.864 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.396 0.604 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.168 0.832 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.011 0.989 40 H 0.251 0.749 41 H 0.033 0.967 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 22.479 -1.883 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.073 3.927 3 N -0.349 5.349 4 C 0.371 3.629 5 O -0.392 6.392 6 C -0.329 4.329 7 C -0.104 4.104 8 C -0.019 4.019 9 C -0.197 4.197 10 C -0.019 4.019 11 N -0.256 5.256 12 H 0.257 0.743 13 C 0.365 3.635 14 O -0.420 6.420 15 C -0.400 4.400 16 S 0.525 5.475 17 C -0.186 4.186 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.346 4.346 21 H 0.095 0.905 22 C -0.208 4.208 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.010 3.990 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.230 0.770 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.185 0.815 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.029 0.971 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.687 21.275 -0.479 22.626 hybrid contribution 0.552 0.623 -1.575 1.782 sum -7.135 21.899 -2.054 23.123 Atomic orbital electron populations 1.22044 0.93914 1.02560 1.02321 1.21456 0.93163 0.79505 0.98579 1.45917 1.53375 1.13149 1.22459 1.16965 0.80430 0.82614 0.82922 1.90792 1.38310 1.75346 1.34801 1.24578 1.06981 0.99677 1.01627 1.20037 1.00093 0.90230 1.00084 1.19301 0.95357 0.94362 0.92920 1.21358 1.06262 0.90429 1.01646 1.21443 0.93237 0.99759 0.87477 1.42999 1.47439 1.16102 1.19048 0.74324 1.15747 0.81233 0.82847 0.83684 1.91002 1.43383 1.83454 1.24156 1.24167 1.12160 1.00743 1.02926 1.84212 1.45483 0.99200 1.18612 1.23382 1.01369 0.98885 0.94946 1.21959 0.89302 1.00756 0.85318 1.44501 1.30516 1.50544 1.07432 1.19084 1.06010 1.16608 0.92938 0.90518 1.24765 0.98756 1.00765 0.96468 1.69771 1.29959 1.46600 1.10979 0.86067 0.80249 0.80214 0.78968 1.21703 1.21671 1.20690 1.21607 0.90435 0.93209 0.93764 0.90985 0.91404 0.92958 0.76996 0.82182 0.82977 0.81525 0.91794 0.90193 0.87283 0.97128 0.93776 0.94940 0.94752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.45 37.16 0.31 -1.98 16 2 C 0.16 2.81 0.81 -129.99 -0.11 2.70 16 3 N -0.70 -11.33 5.14 -47.01 -0.24 -11.57 16 4 C 0.59 9.62 7.03 -12.57 -0.09 9.53 16 5 O -0.52 -9.64 13.66 5.27 0.07 -9.57 16 6 C -0.21 -2.85 6.36 -37.31 -0.24 -3.09 16 7 C -0.07 -0.86 9.82 -40.50 -0.40 -1.26 16 8 C 0.00 -0.03 6.08 -105.08 -0.64 -0.67 16 9 C -0.17 -1.16 10.29 -37.16 -0.38 -1.55 16 10 C 0.10 0.51 11.11 -16.92 -0.19 0.32 16 11 N -0.62 -4.50 5.23 -14.85 -0.08 -4.58 16 12 H 0.42 1.92 8.87 -40.82 -0.36 1.56 16 13 C 0.57 6.91 7.71 -15.07 -0.12 6.79 16 14 O -0.54 -8.35 17.89 4.96 0.09 -8.26 16 15 C -0.28 -3.47 6.48 -37.75 -0.24 -3.72 16 16 S 0.25 3.27 22.27 -107.50 -2.39 0.87 16 17 C -0.15 -2.64 6.09 -24.59 -0.15 -2.79 16 18 C 0.15 3.59 5.87 -2.53 -0.01 3.58 16 19 N -0.60 -15.64 3.39 -170.07 -0.58 -16.21 16 20 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 23 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 24 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C 0.14 3.02 6.13 -3.06 -0.02 3.01 16 29 H 0.07 1.17 6.37 -51.93 -0.33 0.84 16 30 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.40 5.74 7.54 -40.82 -0.31 5.44 16 33 H 0.16 1.74 7.98 -52.49 -0.42 1.32 16 34 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.17 0.06 8.06 -52.49 -0.42 -0.37 16 36 H 0.06 0.97 8.04 -51.92 -0.42 0.56 16 37 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 38 H 0.11 2.91 5.87 -51.93 -0.31 2.61 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.03 0.73 7.80 -51.93 -0.41 0.32 16 42 H 0.03 0.83 6.47 -51.92 -0.34 0.49 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -35.73 360.19 -9.64 -45.37 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.96 Total: 3.36 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.52 Total: 4.10 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.34 Total: -58.66 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.16 Total: -17.83 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.39 Total: 0.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.73 -9.64 -45.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046435674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.563 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds