Wall clock time and date at job start Wed Apr 1 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 110.64382 * 2 1 4 4 C 1.34783 * 119.99816 * 298.31323 * 3 2 1 5 5 O 1.21609 * 119.99997 * 0.02562 * 4 3 2 6 6 C 1.47297 * 119.99525 * 179.97438 * 4 3 2 7 7 C 1.34224 * 124.78751 * 180.02562 * 6 4 3 8 8 C 1.39563 * 115.53056 * 180.30867 * 7 6 4 9 9 C 1.47754 * 129.59834 * 179.72631 * 8 7 6 10 10 C 1.34060 * 119.56006 * 180.02562 * 9 8 7 11 11 N 1.36556 * 121.42463 * 359.97438 * 10 9 8 12 12 H 0.96993 * 119.15957 * 180.02562 * 11 10 9 13 13 C 1.34307 * 121.67639 * 359.47784 * 11 10 9 14 14 O 1.21953 * 119.68912 * 179.97438 * 13 11 10 15 15 C 1.39396 * 112.90188 * 359.50856 * 8 7 6 16 16 S 1.75559 * 124.79630 * 0.03982 * 6 4 3 17 17 C 1.55156 * 110.87450 * 123.25561 * 2 1 3 18 18 C 1.54903 * 101.58342 * 153.93399 * 17 2 1 19 19 N 1.47429 * 104.83441 * 322.98400 * 18 17 2 20 20 C 1.36934 * 125.65240 * 204.09627 * 19 18 17 21 21 H 1.07997 * 120.00288 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99754 * 0.04185 * 20 19 18 23 23 N 1.31622 * 120.00036 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99748 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46923 * 90.00222 * 24 22 20 26 26 H 1.48501 * 109.46841 * 209.99820 * 24 22 20 27 27 H 1.48494 * 109.47320 * 329.99827 * 24 22 20 28 28 C 1.47024 * 108.69566 * 24.13021 * 19 18 17 29 29 H 1.08993 * 109.47578 * 59.29419 * 1 2 3 30 30 H 1.09007 * 109.47629 * 179.30088 * 1 2 3 31 31 H 1.09007 * 109.46685 * 299.29606 * 1 2 3 32 32 H 0.97001 * 120.00244 * 118.31512 * 3 2 1 33 33 H 1.08002 * 122.23117 * 0.02909 * 7 6 4 34 34 H 1.08004 * 120.21523 * 359.97403 * 9 8 7 35 35 H 1.07999 * 119.28681 * 180.02562 * 10 9 8 36 36 H 1.09010 * 111.00024 * 272.00665 * 17 2 1 37 37 H 1.08994 * 111.00837 * 35.85371 * 17 2 1 38 38 H 1.09007 * 110.36403 * 204.14917 * 18 17 2 39 39 H 1.08999 * 110.37345 * 81.82640 * 18 17 2 40 40 H 0.97004 * 119.99620 * 180.02562 * 23 22 20 41 41 H 1.09000 * 109.87982 * 239.51706 * 28 19 18 42 42 H 1.09007 * 110.00528 * 118.43417 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7659 2.1967 -1.0276 5 8 1.0837 1.8039 -1.9546 6 6 2.2848 3.5752 -1.0273 7 6 2.0651 4.4764 -1.9975 8 6 2.6556 5.7259 -1.8028 9 6 2.6220 6.9276 -2.6618 10 6 3.2696 8.0357 -2.2746 11 7 3.9629 8.0810 -1.0990 12 1 4.4193 8.9001 -0.8508 13 6 4.0199 7.0239 -0.2725 14 8 4.6502 7.1042 0.7684 15 6 3.3685 5.8087 -0.6077 16 16 3.2781 4.2715 0.2418 17 6 2.0828 -0.7950 1.2123 18 6 3.4673 -1.2456 0.6835 19 7 3.2470 -1.5462 -0.7429 20 6 4.0075 -2.3902 -1.5074 21 1 3.7631 -2.5439 -2.5481 22 6 5.0924 -3.0483 -0.9448 23 7 5.3905 -2.8608 0.3235 24 14 6.1304 -4.1990 -1.9879 25 1 7.2371 -3.4341 -2.6168 26 1 6.6949 -5.2713 -1.1296 27 1 5.2842 -4.8062 -3.0464 28 6 2.0759 -0.7892 -1.2087 29 1 -0.3634 0.5247 -0.8835 30 1 -0.3634 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8963 32 1 2.5903 1.6843 0.7395 33 1 1.4747 4.2483 -2.8726 34 1 2.0799 6.9130 -3.5958 35 1 3.2417 8.9117 -2.9057 36 1 2.1887 -0.1516 2.0859 37 1 1.4515 -1.6547 1.4365 38 1 3.8030 -2.1380 1.2118 39 1 4.1955 -0.4421 0.7937 40 1 6.1489 -3.3204 0.7165 41 1 1.3139 -1.4754 -1.5782 42 1 2.3685 -0.0993 -2.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046435674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:43 Heat of formation + Delta-G solvation = -10.834168 kcal Electronic energy + Delta-G solvation = -27617.470178 eV Core-core repulsion = 23689.240275 eV Total energy + Delta-G solvation = -3928.229903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05787 -41.44831 -39.27383 -38.43416 -37.08523 -35.81396 -33.84903 -32.47510 -31.60249 -30.75834 -30.35012 -27.57149 -26.85608 -25.42815 -24.71252 -23.08345 -22.28072 -21.58432 -20.66147 -20.13646 -19.37789 -18.83326 -17.84244 -17.65730 -17.08967 -16.89879 -16.75758 -16.66987 -16.22236 -15.76113 -15.59933 -15.32591 -14.87511 -14.57505 -14.37881 -14.07588 -13.89430 -13.78693 -13.55107 -13.34295 -13.18941 -13.05641 -13.01386 -12.85453 -12.77938 -12.16005 -12.11165 -12.04857 -11.99153 -11.71505 -11.63248 -11.50702 -10.98665 -10.76505 -10.54374 -10.23210 -10.10734 -8.90302 -8.81811 -7.79645 -5.23411 -1.09694 0.06756 0.41049 0.64846 0.98752 1.44564 1.46225 1.55293 1.84920 1.98795 2.04099 2.45398 2.47608 3.28502 3.34010 3.52392 3.59453 3.67995 3.75538 3.81310 3.97520 4.12859 4.22990 4.49488 4.60651 4.62573 4.64721 4.70514 4.82986 4.88556 4.93304 4.99052 5.00892 5.05456 5.21971 5.30804 5.41665 5.52655 5.60153 5.75057 5.77730 5.87374 6.29170 6.33042 6.82731 6.96683 7.10016 7.75632 8.39152 9.21894 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002830 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.143076 B = 9892.152584 C =10517.369532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.168 3.832 3 N -0.699 5.699 4 C 0.587 3.413 5 O -0.544 6.544 6 C -0.225 4.225 7 C -0.062 4.062 8 C 0.005 3.995 9 C -0.187 4.187 10 C 0.132 3.868 11 N -0.601 5.601 12 H 0.434 0.566 13 C 0.559 3.441 14 O -0.588 6.588 15 C -0.304 4.304 16 S 0.223 5.777 17 C -0.129 4.129 18 C 0.154 3.846 19 N -0.623 5.623 20 C -0.241 4.241 21 H 0.072 0.928 22 C -0.063 4.063 23 N -0.945 5.945 24 Si 0.979 3.021 25 H -0.289 1.289 26 H -0.288 1.288 27 H -0.271 1.271 28 C 0.136 3.864 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.403 0.597 33 H 0.172 0.828 34 H 0.187 0.813 35 H 0.229 0.771 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.078 0.922 39 H -0.012 1.012 40 H 0.248 0.752 41 H 0.030 0.970 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 25.056 -3.265 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.082 3.918 3 N -0.349 5.349 4 C 0.372 3.628 5 O -0.423 6.423 6 C -0.346 4.346 7 C -0.096 4.096 8 C -0.011 4.011 9 C -0.211 4.211 10 C 0.008 3.992 11 N -0.238 5.238 12 H 0.275 0.725 13 C 0.355 3.645 14 O -0.473 6.473 15 C -0.424 4.424 16 S 0.493 5.507 17 C -0.168 4.168 18 C 0.029 3.971 19 N -0.349 5.349 20 C -0.370 4.370 21 H 0.090 0.910 22 C -0.255 4.255 23 N -0.594 5.594 24 Si 0.807 3.193 25 H -0.216 1.216 26 H -0.214 1.214 27 H -0.196 1.196 28 C 0.010 3.990 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.239 0.761 33 H 0.189 0.811 34 H 0.204 0.796 35 H 0.245 0.755 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.006 0.994 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -8.747 23.901 -1.871 25.520 hybrid contribution 0.889 -0.006 -1.295 1.571 sum -7.858 23.895 -3.166 25.352 Atomic orbital electron populations 1.21972 0.91387 1.03334 1.03182 1.21315 0.94802 0.79702 0.95994 1.45876 1.53536 1.12540 1.22968 1.17261 0.79797 0.83456 0.82259 1.90766 1.39673 1.76238 1.35656 1.24316 1.08498 0.98780 1.03006 1.20307 0.99247 0.90408 0.99615 1.19685 0.93630 0.95112 0.92691 1.21826 1.07626 0.89157 1.02513 1.22410 0.89808 1.01008 0.85975 1.43011 1.46468 1.15368 1.18932 0.72485 1.15859 0.81075 0.83732 0.83819 1.90972 1.45660 1.84350 1.26278 1.24284 1.13768 1.00598 1.03796 1.84184 1.46526 1.00719 1.19245 1.23239 0.97660 0.99881 0.95986 1.21763 0.92222 0.98672 0.84426 1.44785 1.31202 1.50581 1.08359 1.19380 1.06911 1.17437 0.93290 0.90979 1.25575 0.99885 1.02323 0.97740 1.70015 1.30052 1.47177 1.12178 0.85073 0.78462 0.78134 0.77621 1.21623 1.21449 1.19617 1.21690 0.89242 0.92842 0.95277 0.91998 0.90618 0.90239 0.76078 0.81091 0.79602 0.75487 0.88362 0.89058 0.90373 0.99392 0.94203 0.95241 0.97048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.45 71.98 0.61 -3.47 16 2 C 0.17 5.92 0.81 4.79 0.00 5.92 16 3 N -0.70 -22.88 5.14 -420.91 -2.16 -25.05 16 4 C 0.59 19.59 7.03 86.62 0.61 20.20 16 5 O -0.54 -20.71 13.66 -4.06 -0.06 -20.77 16 6 C -0.22 -6.30 6.36 23.74 0.15 -6.15 16 7 C -0.06 -1.45 9.82 21.67 0.21 -1.24 16 8 C 0.01 0.11 6.08 -20.16 -0.12 -0.02 16 9 C -0.19 -1.73 10.29 23.84 0.25 -1.49 16 10 C 0.13 0.60 11.11 83.01 0.92 1.52 16 11 N -0.60 -6.85 5.23 -319.28 -1.67 -8.52 16 12 H 0.43 2.52 8.87 -92.71 -0.82 1.70 16 13 C 0.56 13.11 7.71 85.22 0.66 13.76 16 14 O -0.59 -18.54 17.89 -5.16 -0.09 -18.64 16 15 C -0.30 -7.47 6.48 23.45 0.15 -7.31 16 16 S 0.22 5.97 22.27 -56.49 -1.26 4.71 16 17 C -0.13 -4.56 6.09 31.98 0.19 -4.36 16 18 C 0.15 7.52 5.87 86.85 0.51 8.03 16 19 N -0.62 -33.36 3.39 -691.97 -2.35 -35.71 16 20 C -0.24 -14.12 10.27 84.03 0.86 -13.25 16 21 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 22 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 23 N -0.94 -56.52 10.09 21.65 0.22 -56.30 16 24 Si 0.98 46.82 29.55 68.60 2.03 48.84 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 28 C 0.14 6.18 6.13 86.73 0.53 6.71 16 29 H 0.06 1.96 6.37 -2.39 -0.02 1.94 16 30 H 0.07 2.08 8.12 -2.38 -0.02 2.06 16 31 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.40 11.92 7.54 -92.71 -0.70 11.22 16 33 H 0.17 3.51 7.98 -2.91 -0.02 3.49 16 34 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.23 -1.61 8.06 -2.91 -0.02 -1.64 16 36 H 0.10 2.81 8.04 -2.38 -0.02 2.79 16 37 H 0.09 3.05 8.05 -2.39 -0.02 3.03 16 38 H 0.08 4.33 5.87 -2.38 -0.01 4.32 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.03 1.35 7.80 -2.39 -0.02 1.33 16 42 H 0.01 0.58 6.47 -2.38 -0.02 0.56 16 Total: -1.00 -83.33 360.19 0.24 -83.09 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -0.42 Total: 12.63 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 6.00 Total: 15.70 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -5.96 Total: -125.57 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.15 Total: -39.40 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.26 Total: 4.71 kcal Total: -83.33 0.24 -83.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046435674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.253 kcal (2) G-P(sol) polarization free energy of solvation -83.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds