Wall clock time and date at job start Wed Apr 1 2020 04:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99646 * 2 1 4 4 H 1.48497 * 109.47232 * 269.99431 * 3 2 1 5 5 H 1.48498 * 109.47485 * 29.99853 * 3 2 1 6 6 H 1.48507 * 109.47045 * 149.99766 * 3 2 1 7 7 C 1.38809 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99579 * 169.26746 * 7 2 1 9 9 N 1.36930 * 120.00273 * 349.27745 * 7 2 1 10 10 C 1.47151 * 120.98509 * 328.29042 * 9 7 2 11 11 C 1.53297 * 108.38679 * 230.55998 * 10 9 7 12 12 O 1.42964 * 109.22341 * 307.69403 * 11 10 9 13 13 C 1.42967 * 114.16240 * 62.58106 * 12 11 10 14 14 C 1.47155 * 120.98295 * 148.31316 * 9 7 2 15 15 H 1.08995 * 109.68556 * 249.16275 * 14 9 7 16 16 C 1.53002 * 109.68338 * 9.72095 * 14 9 7 17 17 N 1.46498 * 109.46864 * 299.33384 * 16 14 9 18 18 C 1.34773 * 120.00256 * 179.97438 * 17 16 14 19 19 O 1.21549 * 119.99987 * 0.02562 * 18 17 16 20 20 C 1.47878 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.32461 * 119.74642 * 359.73870 * 20 18 17 22 22 C 1.31765 * 121.98063 * 179.74365 * 21 20 18 23 23 C 1.37678 * 121.48776 * 0.51034 * 22 21 20 24 24 C 1.41106 * 119.39592 * 359.75752 * 23 22 21 25 25 C 1.44978 * 130.47282 * 179.97438 * 24 23 22 26 26 C 1.31999 * 114.85291 * 180.02562 * 25 24 23 27 27 S 1.75351 * 111.45572 * 359.97438 * 26 25 24 28 28 C 1.40266 * 117.63306 * 0.02562 * 24 23 22 29 29 H 0.96998 * 120.00312 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.67735 * 350.28292 * 10 9 7 31 31 H 1.08999 * 109.68618 * 110.79592 * 10 9 7 32 32 H 1.09002 * 109.51327 * 67.62014 * 11 10 9 33 33 H 1.09001 * 109.51208 * 187.72101 * 11 10 9 34 34 H 1.09003 * 109.51068 * 177.49498 * 13 12 11 35 35 H 1.08998 * 109.51301 * 57.34195 * 13 12 11 36 36 H 1.09003 * 109.46998 * 59.32935 * 16 14 9 37 37 H 1.08999 * 109.47300 * 179.33487 * 16 14 9 38 38 H 0.97005 * 120.00175 * 359.97438 * 17 16 14 39 39 H 1.08000 * 119.25720 * 180.24653 * 22 21 20 40 40 H 1.08005 * 120.30336 * 179.78409 * 23 22 21 41 41 H 1.08003 * 122.57529 * 0.02562 * 25 24 23 42 42 H 1.07998 * 124.27915 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0761 -1.2103 -0.1736 9 7 1.3436 -2.3776 0.2217 10 6 0.1603 -2.4246 1.0951 11 6 0.3538 -3.5561 2.1110 12 8 0.6779 -4.7625 1.4158 13 6 1.9038 -4.7040 0.6824 14 6 1.7896 -3.6312 -0.4067 15 1 1.0631 -3.9450 -1.1562 16 6 3.1536 -3.4200 -1.0668 17 7 3.0414 -2.3873 -2.0998 18 6 4.1252 -2.0318 -2.8179 19 8 5.1956 -2.5684 -2.6086 20 6 4.0119 -0.9898 -3.8610 21 7 2.8416 -0.4128 -4.0891 22 6 2.6918 0.5236 -5.0040 23 6 3.7472 0.9452 -5.7810 24 6 5.0205 0.3671 -5.5924 25 6 6.2793 0.6234 -6.2644 26 6 7.2943 -0.1047 -5.8378 27 16 6.8073 -1.1929 -4.5519 28 6 5.1458 -0.6235 -4.6073 29 1 -0.4850 0.8400 -0.0004 30 1 0.0530 -1.4749 1.6193 31 1 -0.7304 -2.6161 0.4967 32 1 1.1651 -3.2991 2.7921 33 1 -0.5664 -3.6977 2.6779 34 1 2.0985 -5.6721 0.2209 35 1 2.7207 -4.4512 1.3583 36 1 3.8764 -3.1043 -0.3144 37 1 3.4860 -4.3535 -1.5208 38 1 2.1871 -1.9593 -2.2671 39 1 1.7181 0.9674 -5.1505 40 1 3.6020 1.7118 -6.5279 41 1 6.3790 1.3540 -7.0536 42 1 8.2980 -0.0386 -6.2309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050963761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:27 Heat of formation + Delta-G solvation = 15.911266 kcal Electronic energy + Delta-G solvation = -28615.923995 eV Core-core repulsion = 24688.853861 eV Total energy + Delta-G solvation = -3927.070134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49076 -39.03200 -38.19140 -36.01427 -35.34620 -33.58239 -31.89603 -31.16087 -30.37892 -30.28594 -27.22589 -25.99612 -24.31537 -23.96592 -23.41608 -21.78889 -21.31677 -20.00657 -19.63485 -18.25580 -17.31539 -16.69797 -16.33869 -15.88874 -15.68765 -15.03704 -14.89844 -14.82439 -14.70693 -14.52546 -14.18786 -14.10370 -13.84240 -13.48716 -13.43247 -12.92816 -12.66218 -12.62361 -12.14934 -11.87765 -11.85412 -11.54773 -11.03001 -10.84731 -10.83682 -10.73377 -10.40052 -10.24684 -10.03357 -9.91451 -9.82463 -9.64323 -9.45930 -9.17347 -8.96960 -8.65299 -8.33350 -7.78158 -6.68467 -5.87384 -3.36514 0.41901 0.81378 1.47300 2.01745 2.10004 3.08515 3.31381 3.38129 3.41478 3.53772 3.98751 4.32620 4.37505 4.44461 4.54774 4.69515 4.88609 5.10933 5.16622 5.31866 5.33407 5.40687 5.48660 5.59901 5.67147 5.73915 5.86201 5.94365 6.03039 6.07256 6.13584 6.16456 6.22056 6.34893 6.48084 6.53747 6.75904 7.02445 7.08753 7.50881 7.73679 7.78200 7.88252 8.20847 8.32794 8.69789 9.09311 9.69551 10.28513 11.19592 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.003969 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.145598 B = 7053.751122 C = 8272.607981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.018 3.982 3 Si 0.892 3.108 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.591 5.591 10 C 0.145 3.855 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.057 3.943 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.133 3.867 17 N -0.664 5.664 18 C 0.556 3.444 19 O -0.549 6.549 20 C 0.141 3.859 21 N -0.427 5.427 22 C 0.087 3.913 23 C -0.117 4.117 24 C -0.049 4.049 25 C -0.130 4.130 26 C -0.207 4.207 27 S 0.187 5.813 28 C -0.165 4.165 29 H 0.255 0.745 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.428 0.572 39 H 0.167 0.833 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.239 -0.594 -10.608 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.722 3.278 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.022 4.022 14 C 0.017 3.983 15 H 0.060 0.940 16 C 0.009 3.991 17 N -0.315 5.315 18 C 0.339 3.661 19 O -0.429 6.429 20 C -0.009 4.009 21 N -0.138 5.138 22 C -0.068 4.068 23 C -0.138 4.138 24 C -0.065 4.065 25 C -0.161 4.161 26 C -0.343 4.343 27 S 0.451 5.549 28 C -0.285 4.285 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.268 0.732 39 H 0.184 0.816 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.790 -2.300 -9.098 12.858 hybrid contribution 0.029 3.011 -1.464 3.349 sum 8.818 0.711 -10.563 13.778 Atomic orbital electron populations 1.69972 1.05126 1.25587 1.53292 1.25067 0.95192 0.98019 0.99899 0.86448 0.79296 0.84093 0.77982 1.21063 1.21509 1.20572 1.19121 0.91138 0.83269 1.44939 0.91222 1.44072 1.32645 1.03016 1.51916 1.21398 0.88999 0.96683 0.90964 1.23355 0.99165 0.86615 0.95185 1.87801 1.40771 1.36261 1.66238 1.22860 0.86830 0.98623 0.93933 1.21436 0.93612 0.89489 0.93748 0.94008 1.21277 0.97984 0.89897 0.89981 1.45903 1.12878 1.38663 1.34062 1.17707 0.84811 0.82088 0.81451 1.90711 1.27657 1.55450 1.69113 1.20775 0.87549 0.96779 0.95803 1.67721 1.23081 1.07439 1.15605 1.22563 0.99377 0.93579 0.91250 1.22092 0.91245 1.00027 1.00487 1.19478 0.94975 0.96258 0.95807 1.20739 0.90161 1.02709 1.02455 1.25733 1.03361 1.02127 1.03036 1.84938 0.97747 1.38658 1.33592 1.23658 1.00151 1.02765 1.01897 0.93501 0.89064 0.95221 0.94118 0.90250 0.89889 0.93467 0.91096 0.91902 0.73172 0.81635 0.84029 0.83644 0.81334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 11.17 55.49 0.62 -23.81 16 2 C 0.02 0.48 5.06 -17.43 -0.09 0.39 16 3 Si 0.89 21.55 29.57 -169.99 -5.03 16.53 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.26 -6.47 7.04 -15.06 -0.11 -6.57 16 8 H 0.07 1.82 5.84 -52.49 -0.31 1.51 16 9 N -0.59 -13.80 3.03 -164.30 -0.50 -14.30 16 10 C 0.14 3.31 5.37 -3.53 -0.02 3.30 16 11 C 0.03 0.67 6.98 37.31 0.26 0.93 16 12 O -0.39 -7.65 10.74 -35.23 -0.38 -8.02 16 13 C 0.06 1.00 6.29 37.31 0.23 1.24 16 14 C 0.12 2.47 3.21 -67.42 -0.22 2.25 16 15 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 16 C 0.13 2.50 4.45 -4.04 -0.02 2.49 16 17 N -0.66 -13.44 3.77 -61.24 -0.23 -13.67 16 18 C 0.56 11.20 7.80 -12.32 -0.10 11.10 16 19 O -0.55 -11.49 15.03 5.32 0.08 -11.41 16 20 C 0.14 2.65 6.78 -82.76 -0.56 2.09 16 21 N -0.43 -7.82 9.51 -9.78 -0.09 -7.92 16 22 C 0.09 1.27 11.12 -17.78 -0.20 1.07 16 23 C -0.12 -1.45 10.18 -38.70 -0.39 -1.84 16 24 C -0.05 -0.68 6.10 -105.38 -0.64 -1.33 16 25 C -0.13 -1.41 10.39 -38.83 -0.40 -1.82 16 26 C -0.21 -2.19 11.02 28.82 0.32 -1.88 16 27 S 0.19 2.66 21.43 -107.50 -2.30 0.36 16 28 C -0.17 -2.74 6.33 -37.93 -0.24 -2.98 16 29 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.09 2.29 6.37 -51.93 -0.33 1.96 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.43 7.56 -51.93 -0.39 1.03 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.43 9.34 6.65 -40.82 -0.27 9.07 16 39 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.57 357.63 -9.70 -40.27 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.09 Total: 8.15 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.17 Total: 8.44 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.20 Total: -59.70 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.30 Total: -19.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.30 Total: 0.36 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.57 -9.70 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050963761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.177 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds