Wall clock time and date at job start Wed Apr 1 2020 04:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99646 * 2 1 4 4 H 1.48497 * 109.47232 * 269.99431 * 3 2 1 5 5 H 1.48498 * 109.47485 * 29.99853 * 3 2 1 6 6 H 1.48507 * 109.47045 * 149.99766 * 3 2 1 7 7 C 1.38809 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99579 * 169.26746 * 7 2 1 9 9 N 1.36930 * 120.00273 * 349.27745 * 7 2 1 10 10 C 1.47151 * 120.98509 * 328.29042 * 9 7 2 11 11 C 1.53297 * 108.38679 * 230.55998 * 10 9 7 12 12 O 1.42964 * 109.22341 * 307.69403 * 11 10 9 13 13 C 1.42967 * 114.16240 * 62.58106 * 12 11 10 14 14 C 1.47155 * 120.98295 * 148.31316 * 9 7 2 15 15 H 1.08995 * 109.68556 * 249.16275 * 14 9 7 16 16 C 1.53002 * 109.68338 * 9.72095 * 14 9 7 17 17 N 1.46498 * 109.46864 * 299.33384 * 16 14 9 18 18 C 1.34773 * 120.00256 * 179.97438 * 17 16 14 19 19 O 1.21549 * 119.99987 * 0.02562 * 18 17 16 20 20 C 1.47878 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.32461 * 119.74642 * 359.73870 * 20 18 17 22 22 C 1.31765 * 121.98063 * 179.74365 * 21 20 18 23 23 C 1.37678 * 121.48776 * 0.51034 * 22 21 20 24 24 C 1.41106 * 119.39592 * 359.75752 * 23 22 21 25 25 C 1.44978 * 130.47282 * 179.97438 * 24 23 22 26 26 C 1.31999 * 114.85291 * 180.02562 * 25 24 23 27 27 S 1.75351 * 111.45572 * 359.97438 * 26 25 24 28 28 C 1.40266 * 117.63306 * 0.02562 * 24 23 22 29 29 H 0.96998 * 120.00312 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.67735 * 350.28292 * 10 9 7 31 31 H 1.08999 * 109.68618 * 110.79592 * 10 9 7 32 32 H 1.09002 * 109.51327 * 67.62014 * 11 10 9 33 33 H 1.09001 * 109.51208 * 187.72101 * 11 10 9 34 34 H 1.09003 * 109.51068 * 177.49498 * 13 12 11 35 35 H 1.08998 * 109.51301 * 57.34195 * 13 12 11 36 36 H 1.09003 * 109.46998 * 59.32935 * 16 14 9 37 37 H 1.08999 * 109.47300 * 179.33487 * 16 14 9 38 38 H 0.97005 * 120.00175 * 359.97438 * 17 16 14 39 39 H 1.08000 * 119.25720 * 180.24653 * 22 21 20 40 40 H 1.08005 * 120.30336 * 179.78409 * 23 22 21 41 41 H 1.08003 * 122.57529 * 0.02562 * 25 24 23 42 42 H 1.07998 * 124.27915 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0761 -1.2103 -0.1736 9 7 1.3436 -2.3776 0.2217 10 6 0.1603 -2.4246 1.0951 11 6 0.3538 -3.5561 2.1110 12 8 0.6779 -4.7625 1.4158 13 6 1.9038 -4.7040 0.6824 14 6 1.7896 -3.6312 -0.4067 15 1 1.0631 -3.9450 -1.1562 16 6 3.1536 -3.4200 -1.0668 17 7 3.0414 -2.3873 -2.0998 18 6 4.1252 -2.0318 -2.8179 19 8 5.1956 -2.5684 -2.6086 20 6 4.0119 -0.9898 -3.8610 21 7 2.8416 -0.4128 -4.0891 22 6 2.6918 0.5236 -5.0040 23 6 3.7472 0.9452 -5.7810 24 6 5.0205 0.3671 -5.5924 25 6 6.2793 0.6234 -6.2644 26 6 7.2943 -0.1047 -5.8378 27 16 6.8073 -1.1929 -4.5519 28 6 5.1458 -0.6235 -4.6073 29 1 -0.4850 0.8400 -0.0004 30 1 0.0530 -1.4749 1.6193 31 1 -0.7304 -2.6161 0.4967 32 1 1.1651 -3.2991 2.7921 33 1 -0.5664 -3.6977 2.6779 34 1 2.0985 -5.6721 0.2209 35 1 2.7207 -4.4512 1.3583 36 1 3.8764 -3.1043 -0.3144 37 1 3.4860 -4.3535 -1.5208 38 1 2.1871 -1.9593 -2.2671 39 1 1.7181 0.9674 -5.1505 40 1 3.6020 1.7118 -6.5279 41 1 6.3790 1.3540 -7.0536 42 1 8.2980 -0.0386 -6.2309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050963761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:26 Heat of formation + Delta-G solvation = -4.452633 kcal Electronic energy + Delta-G solvation = -28616.807040 eV Core-core repulsion = 24688.853861 eV Total energy + Delta-G solvation = -3927.953179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.71752 -40.52435 -39.72993 -37.04461 -36.97557 -35.34307 -33.43322 -32.63111 -31.98585 -31.35299 -29.02765 -27.48440 -25.38566 -25.34934 -25.15276 -23.34861 -22.43675 -21.47768 -21.22515 -19.50067 -18.73990 -18.14628 -17.72765 -17.54787 -17.17307 -16.44070 -16.38731 -16.25808 -16.05989 -15.78480 -15.75170 -15.41331 -15.07530 -15.04950 -14.89984 -14.67233 -14.30005 -13.62115 -13.57884 -13.19880 -13.12642 -12.92730 -12.88700 -12.76233 -12.53099 -12.18593 -12.02958 -11.92396 -11.86971 -11.31151 -11.20286 -10.93979 -10.81001 -10.61731 -10.55893 -10.20368 -9.96134 -8.87612 -8.60629 -7.88463 -5.38165 -0.67355 -0.30675 0.41637 1.05797 1.12241 1.34963 1.38563 1.44154 1.77601 2.13456 2.43002 2.73288 3.02068 3.14982 3.29870 3.43230 3.45866 3.64481 3.75699 3.99904 4.17442 4.21166 4.28645 4.36446 4.43467 4.47891 4.52798 4.57760 4.62264 4.65914 4.72929 4.78554 4.99921 5.01731 5.10043 5.24938 5.28771 5.43758 5.46998 5.62849 5.67583 6.29584 6.36377 6.46619 6.77105 7.10839 7.13845 7.75811 8.31826 9.16468 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.003969 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.145598 B = 7053.751122 C = 8272.607981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 0.937 3.063 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.060 0.940 9 N -0.605 5.605 10 C 0.150 3.850 11 C 0.047 3.953 12 O -0.396 6.396 13 C 0.060 3.940 14 C 0.125 3.875 15 H 0.035 0.965 16 C 0.138 3.862 17 N -0.673 5.673 18 C 0.552 3.448 19 O -0.566 6.566 20 C 0.102 3.898 21 N -0.460 5.460 22 C 0.065 3.935 23 C -0.090 4.090 24 C -0.059 4.059 25 C -0.125 4.125 26 C -0.187 4.187 27 S 0.136 5.864 28 C -0.185 4.185 29 H 0.250 0.750 30 H 0.065 0.935 31 H 0.006 0.994 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.418 0.582 39 H 0.189 0.811 40 H 0.191 0.809 41 H 0.190 0.810 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 0.051 -12.529 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.219 4.219 3 Si 0.767 3.233 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.078 0.922 9 N -0.331 5.331 10 C 0.025 3.975 11 C -0.031 4.031 12 O -0.315 6.315 13 C -0.019 4.019 14 C 0.019 3.981 15 H 0.052 0.948 16 C 0.015 3.985 17 N -0.322 5.322 18 C 0.337 3.663 19 O -0.447 6.447 20 C -0.047 4.047 21 N -0.173 5.173 22 C -0.090 4.090 23 C -0.111 4.111 24 C -0.075 4.075 25 C -0.154 4.154 26 C -0.322 4.322 27 S 0.399 5.601 28 C -0.304 4.304 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.257 0.743 39 H 0.206 0.794 40 H 0.208 0.792 41 H 0.207 0.793 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 10.256 -1.681 -11.017 15.146 hybrid contribution -0.359 2.831 -1.006 3.026 sum 9.897 1.150 -12.023 15.615 Atomic orbital electron populations 1.70074 1.05856 1.25498 1.55212 1.25478 0.95656 0.99849 1.00888 0.85756 0.78085 0.82112 0.77393 1.21489 1.21434 1.21182 1.19096 0.90712 0.84121 1.43027 0.92201 1.44278 1.32526 1.03695 1.52604 1.21237 0.88061 0.97006 0.91222 1.23215 1.00637 0.85211 0.94040 1.87805 1.41532 1.35847 1.66289 1.22971 0.86339 0.99452 0.93118 1.21573 0.93636 0.88613 0.94326 0.94755 1.21265 0.97002 0.90671 0.89609 1.45932 1.12565 1.39107 1.34581 1.18073 0.84339 0.82281 0.81650 1.90677 1.27957 1.56225 1.69841 1.20527 0.88902 0.98080 0.97150 1.67602 1.23496 1.08857 1.17296 1.23102 1.01364 0.93314 0.91214 1.22588 0.89721 0.99205 0.99566 1.20065 0.96852 0.95387 0.95218 1.21119 0.88336 1.03167 1.02749 1.26061 1.05162 1.00125 1.00841 1.85027 0.97541 1.40985 1.36498 1.23872 1.00179 1.03816 1.02547 0.94026 0.91633 0.97560 0.93730 0.87631 0.86277 0.93047 0.92571 0.89537 0.74308 0.79425 0.79151 0.79296 0.77398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.81 11.17 21.65 0.24 -51.57 16 2 C -0.02 -1.16 5.06 84.86 0.43 -0.73 16 3 Si 0.94 45.46 29.57 68.60 2.03 47.49 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.24 -12.47 7.04 84.03 0.59 -11.88 16 8 H 0.06 3.24 5.84 -2.91 -0.02 3.22 16 9 N -0.60 -28.85 3.03 -673.73 -2.04 -30.89 16 10 C 0.15 7.01 5.37 86.35 0.46 7.47 16 11 C 0.05 1.76 6.98 72.08 0.50 2.26 16 12 O -0.40 -14.77 10.74 -148.98 -1.60 -16.37 16 13 C 0.06 2.02 6.29 72.08 0.45 2.47 16 14 C 0.12 4.97 3.21 44.97 0.14 5.11 16 15 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 16 C 0.14 5.30 4.45 86.38 0.38 5.69 16 17 N -0.67 -28.32 3.77 -465.94 -1.76 -30.08 16 18 C 0.55 23.21 7.80 86.80 0.68 23.89 16 19 O -0.57 -24.63 15.03 -3.87 -0.06 -24.69 16 20 C 0.10 3.96 6.78 42.18 0.29 4.24 16 21 N -0.46 -17.28 9.51 -184.87 -1.76 -19.04 16 22 C 0.07 1.84 11.12 84.57 0.94 2.78 16 23 C -0.09 -1.95 10.18 22.84 0.23 -1.72 16 24 C -0.06 -1.48 6.10 -20.35 -0.12 -1.61 16 25 C -0.12 -2.17 10.39 23.09 0.24 -1.93 16 26 C -0.19 -3.32 11.02 66.91 0.74 -2.58 16 27 S 0.14 3.84 21.43 -56.49 -1.21 2.63 16 28 C -0.18 -6.10 6.33 23.34 0.15 -5.95 16 29 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.07 3.39 6.37 -2.39 -0.02 3.37 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 2.31 7.56 -2.39 -0.02 2.29 16 37 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.42 19.20 6.65 -92.70 -0.62 18.58 16 39 H 0.19 4.16 8.06 -2.91 -0.02 4.13 16 40 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -70.22 357.63 0.41 -69.81 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.45 Total: 25.18 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: 6.11 Total: 27.52 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -5.31 Total: -131.58 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.66 Total: -41.06 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.21 Total: 2.63 kcal Total: -70.22 0.41 -69.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050963761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.361 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds