Wall clock time and date at job start Wed Apr 1 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48511 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47449 * 300.00248 * 3 2 1 6 6 H 1.48504 * 109.47203 * 60.00486 * 3 2 1 7 7 C 1.38809 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99670 * 190.78542 * 7 2 1 9 9 N 1.36936 * 120.00307 * 10.77873 * 7 2 1 10 10 C 1.47162 * 120.99202 * 31.07206 * 9 7 2 11 11 C 1.53290 * 108.41484 * 129.50620 * 10 9 7 12 12 O 1.42971 * 109.21757 * 52.28404 * 11 10 9 13 13 C 1.42957 * 114.16901 * 297.41463 * 12 11 10 14 14 C 1.47150 * 120.98308 * 211.05411 * 9 7 2 15 15 H 1.09002 * 109.68308 * 110.74448 * 14 9 7 16 16 C 1.53008 * 109.68093 * 350.23224 * 14 9 7 17 17 N 1.46497 * 109.46955 * 61.29361 * 16 14 9 18 18 C 1.34774 * 119.99696 * 180.02562 * 17 16 14 19 19 O 1.21614 * 120.00356 * 359.97438 * 18 17 16 20 20 C 1.47373 * 120.00028 * 180.02562 * 18 17 16 21 21 C 1.38761 * 120.55116 * 359.81008 * 20 18 17 22 22 N 1.31904 * 121.11999 * 179.68451 * 21 20 18 23 23 C 1.31669 * 122.21856 * 0.24980 * 22 21 20 24 24 C 1.39291 * 121.13972 * 0.02562 * 23 22 21 25 25 S 1.75884 * 131.39719 * 180.02562 * 24 23 22 26 26 C 1.75550 * 91.52410 * 179.97438 * 25 24 23 27 27 C 1.32479 * 110.79309 * 0.02562 * 26 25 24 28 28 C 1.40006 * 115.78341 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00175 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.68354 * 9.77011 * 10 9 7 31 31 H 1.08994 * 109.65399 * 249.23435 * 10 9 7 32 32 H 1.08997 * 109.51686 * 292.36022 * 11 10 9 33 33 H 1.08995 * 109.51605 * 172.20229 * 11 10 9 34 34 H 1.08996 * 109.51518 * 302.66192 * 13 12 11 35 35 H 1.08995 * 109.55603 * 182.53087 * 13 12 11 36 36 H 1.08996 * 109.46995 * 301.29085 * 16 14 9 37 37 H 1.09005 * 109.46838 * 181.28926 * 16 14 9 38 38 H 0.96995 * 120.00342 * 359.97438 * 17 16 14 39 39 H 1.07995 * 119.44364 * 359.93329 * 21 20 18 40 40 H 1.07998 * 119.43376 * 180.02562 * 23 22 21 41 41 H 1.08003 * 124.59970 * 179.97438 * 26 25 24 42 42 H 1.08006 * 122.10410 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0759 -1.2104 0.1745 9 7 1.3437 -2.3775 -0.2228 10 6 0.1528 -2.4217 -1.0862 11 6 0.3381 -3.5478 -2.1096 12 8 0.6701 -4.7574 -1.4234 13 6 1.9026 -4.7012 -0.7012 14 6 1.7973 -3.6340 0.3943 15 1 1.0786 -3.9525 1.1494 16 6 3.1672 -3.4244 1.0428 17 7 3.0600 -2.4084 2.0928 18 6 4.1494 -2.0573 2.8044 19 8 5.2213 -2.5842 2.5752 20 6 4.0416 -1.0357 3.8611 21 6 2.8250 -0.4251 4.1303 22 7 2.7144 0.4862 5.0775 23 6 3.7410 0.8666 5.8089 24 6 5.0067 0.3187 5.6140 25 16 6.5410 0.6197 6.4195 26 6 7.3578 -0.5579 5.4057 27 6 6.5113 -1.1071 4.5473 28 6 5.1887 -0.6539 4.6217 29 1 -0.4850 0.8400 0.0004 30 1 0.0396 -1.4695 -1.6047 31 1 -0.7320 -2.6179 -0.4807 32 1 1.1428 -3.2865 -2.7969 33 1 -0.5873 -3.6884 -2.6680 34 1 2.7129 -4.4440 -1.3833 35 1 2.1035 -5.6711 -0.2464 36 1 3.8797 -3.0928 0.2877 37 1 3.5101 -4.3627 1.4789 38 1 2.2052 -1.9879 2.2754 39 1 1.9529 -0.7035 3.5572 40 1 3.5993 1.6164 6.5731 41 1 8.4080 -0.8009 5.4722 42 1 6.8218 -1.8578 3.8356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051081211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:02 Heat of formation + Delta-G solvation = 14.606077 kcal Electronic energy + Delta-G solvation = -28665.235447 eV Core-core repulsion = 24738.108716 eV Total energy + Delta-G solvation = -3927.126731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.73074 -39.06424 -38.20724 -36.39799 -35.34052 -33.68437 -32.21467 -31.11349 -30.37990 -30.32627 -27.28384 -25.92202 -24.55811 -23.95709 -23.49898 -21.81528 -21.03772 -20.43756 -19.73843 -18.36965 -17.33930 -16.76232 -16.30458 -15.99038 -15.83654 -15.63638 -14.91463 -14.85396 -14.58365 -14.37808 -14.21215 -14.08602 -13.88987 -13.63925 -13.46847 -13.00591 -12.73641 -12.61600 -12.26212 -12.05495 -11.95173 -11.61884 -11.10202 -11.05813 -10.93999 -10.79826 -10.45959 -10.27793 -10.12731 -10.08316 -9.89691 -9.70102 -9.37479 -9.13469 -9.02395 -8.75216 -8.43515 -7.93469 -6.79366 -5.96742 -3.46813 0.24081 0.75360 1.29826 1.72782 2.28957 3.05973 3.24814 3.35616 3.37105 3.54716 3.92642 4.28964 4.32086 4.48244 4.49850 4.67456 4.83558 5.07665 5.08712 5.21036 5.24957 5.36371 5.52444 5.58399 5.67835 5.79487 5.83281 5.96364 6.01217 6.05753 6.11158 6.16169 6.27837 6.29899 6.41773 6.47582 6.68540 6.93375 7.02816 7.45005 7.64775 7.80267 7.82474 8.01360 8.22952 8.59993 8.99832 9.59976 10.19088 11.09370 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.003720 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.825023 B = 7524.369353 C = 8690.134562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.014 3.986 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.259 4.259 8 H 0.073 0.927 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.124 3.876 15 H 0.043 0.957 16 C 0.136 3.864 17 N -0.685 5.685 18 C 0.557 3.443 19 O -0.554 6.554 20 C -0.141 4.141 21 C 0.133 3.867 22 N -0.470 5.470 23 C 0.173 3.827 24 C -0.217 4.217 25 S 0.104 5.896 26 C -0.178 4.178 27 C -0.117 4.117 28 C 0.014 3.986 29 H 0.256 0.744 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.415 0.585 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -2.073 9.327 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.186 4.186 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.389 4.389 8 H 0.091 0.909 9 N -0.318 5.318 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.336 5.336 18 C 0.343 3.657 19 O -0.434 6.434 20 C -0.148 4.148 21 C -0.020 4.020 22 N -0.179 5.179 23 C 0.005 3.995 24 C -0.334 4.334 25 S 0.366 5.634 26 C -0.313 4.313 27 C -0.146 4.146 28 C -0.003 4.003 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.254 0.746 39 H 0.189 0.811 40 H 0.181 0.819 41 H 0.190 0.810 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.699 -1.199 10.398 13.610 hybrid contribution 0.493 0.268 -1.338 1.451 sum 9.192 -0.931 9.060 12.940 Atomic orbital electron populations 1.69970 1.05106 1.25719 1.53074 1.25100 0.95255 0.98056 1.00196 0.86436 0.79656 0.84405 0.77818 1.20194 1.21290 1.21091 1.19252 0.91326 0.83293 1.44986 0.90918 1.44096 1.31963 1.02822 1.52873 1.21422 0.88835 0.96857 0.91045 1.23357 0.99157 0.86505 0.95311 1.87806 1.40129 1.36068 1.67047 1.22851 0.86724 0.98652 0.94054 1.21445 0.93552 0.89414 0.93890 0.93976 1.21229 0.97852 0.90136 0.89594 1.45941 1.11961 1.40865 1.34792 1.17738 0.84537 0.82003 0.81409 1.90667 1.27641 1.55762 1.69368 1.20926 0.93753 1.00857 0.99261 1.22992 0.96467 0.90010 0.92542 1.67780 1.31328 1.12906 1.05862 1.22393 0.85311 0.95749 0.96062 1.23824 1.00364 1.05170 1.04055 1.84031 0.97619 1.43124 1.38666 1.25523 1.04022 1.01375 1.00402 1.20309 0.90879 1.02445 1.00959 1.18265 0.93914 0.94285 0.93814 0.93331 0.88931 0.95175 0.94112 0.90209 0.93477 0.89869 0.91125 0.91939 0.74617 0.81126 0.81941 0.80963 0.81457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.51 11.13 55.49 0.62 -22.90 16 2 C 0.01 0.36 5.06 -17.43 -0.09 0.27 16 3 Si 0.89 20.78 29.57 -169.99 -5.03 15.75 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.26 -6.22 7.11 -15.06 -0.11 -6.33 16 8 H 0.07 1.79 5.81 -52.48 -0.30 1.49 16 9 N -0.59 -13.13 3.03 -164.29 -0.50 -13.63 16 10 C 0.14 3.17 5.38 -3.53 -0.02 3.15 16 11 C 0.03 0.65 6.99 37.31 0.26 0.91 16 12 O -0.39 -7.40 10.74 -35.23 -0.38 -7.78 16 13 C 0.06 0.96 6.29 37.31 0.23 1.19 16 14 C 0.12 2.32 3.20 -67.42 -0.22 2.10 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.39 4.44 -4.04 -0.02 2.37 16 17 N -0.68 -12.43 3.75 -61.40 -0.23 -12.66 16 18 C 0.56 10.27 7.77 -12.54 -0.10 10.17 16 19 O -0.55 -10.99 14.47 5.27 0.08 -10.91 16 20 C -0.14 -2.42 5.94 -104.21 -0.62 -3.03 16 21 C 0.13 2.24 10.67 -17.33 -0.18 2.05 16 22 N -0.47 -7.58 10.32 -12.88 -0.13 -7.72 16 23 C 0.17 2.34 11.20 -17.23 -0.19 2.15 16 24 C -0.22 -2.98 6.52 -38.48 -0.25 -3.23 16 25 S 0.10 1.10 23.29 -107.50 -2.50 -1.40 16 26 C -0.18 -1.94 11.10 28.82 0.32 -1.62 16 27 C -0.12 -1.64 9.43 -40.84 -0.39 -2.03 16 28 C 0.01 0.22 5.88 -106.74 -0.63 -0.41 16 29 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.09 2.26 6.32 -51.93 -0.33 1.93 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.41 7.77 5.41 -40.82 -0.22 7.55 16 39 H 0.17 2.86 6.37 -52.49 -0.33 2.52 16 40 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.17 2.51 6.28 -52.48 -0.33 2.18 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -28.95 353.73 -9.59 -38.53 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.85 Total: 9.67 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -1.99 Total: 7.71 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.24 Total: -56.91 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.30 Total: -18.69 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.50 Total: -1.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.95 -9.59 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051081211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.141 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds