Wall clock time and date at job start Wed Apr 1 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48511 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47449 * 300.00248 * 3 2 1 6 6 H 1.48504 * 109.47203 * 60.00486 * 3 2 1 7 7 C 1.38809 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99670 * 190.78542 * 7 2 1 9 9 N 1.36936 * 120.00307 * 10.77873 * 7 2 1 10 10 C 1.47162 * 120.99202 * 31.07206 * 9 7 2 11 11 C 1.53290 * 108.41484 * 129.50620 * 10 9 7 12 12 O 1.42971 * 109.21757 * 52.28404 * 11 10 9 13 13 C 1.42957 * 114.16901 * 297.41463 * 12 11 10 14 14 C 1.47150 * 120.98308 * 211.05411 * 9 7 2 15 15 H 1.09002 * 109.68308 * 110.74448 * 14 9 7 16 16 C 1.53008 * 109.68093 * 350.23224 * 14 9 7 17 17 N 1.46497 * 109.46955 * 61.29361 * 16 14 9 18 18 C 1.34774 * 119.99696 * 180.02562 * 17 16 14 19 19 O 1.21614 * 120.00356 * 359.97438 * 18 17 16 20 20 C 1.47373 * 120.00028 * 180.02562 * 18 17 16 21 21 C 1.38761 * 120.55116 * 359.81008 * 20 18 17 22 22 N 1.31904 * 121.11999 * 179.68451 * 21 20 18 23 23 C 1.31669 * 122.21856 * 0.24980 * 22 21 20 24 24 C 1.39291 * 121.13972 * 0.02562 * 23 22 21 25 25 S 1.75884 * 131.39719 * 180.02562 * 24 23 22 26 26 C 1.75550 * 91.52410 * 179.97438 * 25 24 23 27 27 C 1.32479 * 110.79309 * 0.02562 * 26 25 24 28 28 C 1.40006 * 115.78341 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00175 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.68354 * 9.77011 * 10 9 7 31 31 H 1.08994 * 109.65399 * 249.23435 * 10 9 7 32 32 H 1.08997 * 109.51686 * 292.36022 * 11 10 9 33 33 H 1.08995 * 109.51605 * 172.20229 * 11 10 9 34 34 H 1.08996 * 109.51518 * 302.66192 * 13 12 11 35 35 H 1.08995 * 109.55603 * 182.53087 * 13 12 11 36 36 H 1.08996 * 109.46995 * 301.29085 * 16 14 9 37 37 H 1.09005 * 109.46838 * 181.28926 * 16 14 9 38 38 H 0.96995 * 120.00342 * 359.97438 * 17 16 14 39 39 H 1.07995 * 119.44364 * 359.93329 * 21 20 18 40 40 H 1.07998 * 119.43376 * 180.02562 * 23 22 21 41 41 H 1.08003 * 124.59970 * 179.97438 * 26 25 24 42 42 H 1.08006 * 122.10410 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0759 -1.2104 0.1745 9 7 1.3437 -2.3775 -0.2228 10 6 0.1528 -2.4217 -1.0862 11 6 0.3381 -3.5478 -2.1096 12 8 0.6701 -4.7574 -1.4234 13 6 1.9026 -4.7012 -0.7012 14 6 1.7973 -3.6340 0.3943 15 1 1.0786 -3.9525 1.1494 16 6 3.1672 -3.4244 1.0428 17 7 3.0600 -2.4084 2.0928 18 6 4.1494 -2.0573 2.8044 19 8 5.2213 -2.5842 2.5752 20 6 4.0416 -1.0357 3.8611 21 6 2.8250 -0.4251 4.1303 22 7 2.7144 0.4862 5.0775 23 6 3.7410 0.8666 5.8089 24 6 5.0067 0.3187 5.6140 25 16 6.5410 0.6197 6.4195 26 6 7.3578 -0.5579 5.4057 27 6 6.5113 -1.1071 4.5473 28 6 5.1887 -0.6539 4.6217 29 1 -0.4850 0.8400 0.0004 30 1 0.0396 -1.4695 -1.6047 31 1 -0.7320 -2.6179 -0.4807 32 1 1.1428 -3.2865 -2.7969 33 1 -0.5873 -3.6884 -2.6680 34 1 2.7129 -4.4440 -1.3833 35 1 2.1035 -5.6711 -0.2464 36 1 3.8797 -3.0928 0.2877 37 1 3.5101 -4.3627 1.4789 38 1 2.2052 -1.9879 2.2754 39 1 1.9529 -0.7035 3.5572 40 1 3.5993 1.6164 6.5731 41 1 8.4080 -0.8009 5.4722 42 1 6.8218 -1.8578 3.8356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051081211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:02 Heat of formation + Delta-G solvation = -3.824973 kcal Electronic energy + Delta-G solvation = -28666.034677 eV Core-core repulsion = 24738.108716 eV Total energy + Delta-G solvation = -3927.925961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92320 -40.51244 -39.67755 -37.50368 -36.87103 -35.34725 -33.67593 -32.67944 -31.88157 -31.39703 -29.01754 -27.33747 -25.68986 -25.31932 -25.09837 -23.34954 -22.17329 -21.72512 -21.37847 -19.63540 -18.63317 -18.31083 -17.64819 -17.44377 -17.19608 -16.92726 -16.33587 -16.31811 -16.23217 -15.75869 -15.51150 -15.31800 -15.11822 -15.08008 -15.01144 -14.65503 -14.27416 -13.77177 -13.56400 -13.33962 -13.14591 -13.10593 -12.94925 -12.78486 -12.51494 -12.17225 -12.00945 -11.99729 -11.87139 -11.41992 -11.27196 -11.04010 -10.75603 -10.61157 -10.55025 -10.17587 -9.94296 -8.90964 -8.63757 -7.90438 -5.40252 -0.86260 -0.38428 0.34833 0.76693 1.23473 1.33629 1.41463 1.45300 1.73764 2.17700 2.40644 2.68271 3.03679 3.19814 3.26581 3.41343 3.43293 3.63348 3.68196 3.95618 4.00946 4.14465 4.23613 4.29544 4.34010 4.47922 4.49671 4.59569 4.64059 4.66648 4.74474 4.80276 5.00844 5.03637 5.11289 5.19106 5.29955 5.31374 5.48100 5.63906 5.67241 6.29300 6.36098 6.53838 6.66659 7.08880 7.15459 7.74499 8.30447 9.13830 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.003720 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.825023 B = 7524.369353 C = 8690.134562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 0.931 3.069 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.067 0.933 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.397 6.397 13 C 0.058 3.942 14 C 0.125 3.875 15 H 0.039 0.961 16 C 0.142 3.858 17 N -0.689 5.689 18 C 0.558 3.442 19 O -0.572 6.572 20 C -0.168 4.168 21 C 0.127 3.873 22 N -0.497 5.497 23 C 0.183 3.817 24 C -0.239 4.239 25 S 0.185 5.815 26 C -0.153 4.153 27 C -0.155 4.155 28 C -0.002 4.002 29 H 0.251 0.749 30 H 0.066 0.934 31 H 0.008 0.992 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.410 0.590 39 H 0.159 0.841 40 H 0.202 0.798 41 H 0.210 0.790 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -2.199 10.901 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.220 4.220 3 Si 0.761 3.239 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.084 0.916 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.031 4.031 12 O -0.315 6.315 13 C -0.020 4.020 14 C 0.019 3.981 15 H 0.057 0.943 16 C 0.018 3.982 17 N -0.339 5.339 18 C 0.345 3.655 19 O -0.455 6.455 20 C -0.175 4.175 21 C -0.026 4.026 22 N -0.207 5.207 23 C 0.015 3.985 24 C -0.356 4.356 25 S 0.448 5.552 26 C -0.288 4.288 27 C -0.184 4.184 28 C -0.019 4.019 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.137 0.863 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.248 0.752 39 H 0.176 0.824 40 H 0.218 0.782 41 H 0.227 0.773 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.848 -1.345 11.971 16.210 hybrid contribution 0.001 0.328 -1.655 1.687 sum 10.849 -1.017 10.316 15.005 Atomic orbital electron populations 1.70065 1.05818 1.25486 1.55206 1.25455 0.95596 0.99658 1.01339 0.85765 0.78429 0.82625 0.77069 1.20776 1.21683 1.21835 1.19240 0.90984 0.83997 1.42713 0.91572 1.44295 1.31780 1.03558 1.53496 1.21250 0.88063 0.97020 0.91331 1.23213 1.00518 0.85225 0.94191 1.87809 1.40964 1.35644 1.67123 1.22980 0.86137 0.99621 0.93311 1.21584 0.93745 0.88353 0.94455 0.94310 1.21205 0.96767 0.91007 0.89234 1.45966 1.11809 1.41092 1.34988 1.17979 0.84085 0.81987 0.81486 1.90640 1.28122 1.56604 1.70116 1.20823 0.94785 1.01724 1.00187 1.22817 0.96087 0.90622 0.93047 1.67784 1.32793 1.13481 1.06600 1.23029 0.84736 0.95230 0.95462 1.24167 1.02320 1.04865 1.04295 1.83814 0.94222 1.41013 1.36169 1.26054 1.05348 0.99342 0.98106 1.20197 0.90965 1.04271 1.03011 1.18524 0.94198 0.94962 0.94186 0.93965 0.91581 0.97397 0.93814 0.87793 0.93163 0.86310 0.92704 0.89557 0.75151 0.82399 0.78151 0.77282 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.03 11.13 21.65 0.24 -49.79 16 2 C -0.02 -1.20 5.06 84.86 0.43 -0.77 16 3 Si 0.93 44.02 29.57 68.60 2.03 46.04 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.24 -11.75 7.11 84.03 0.60 -11.15 16 8 H 0.07 3.35 5.81 -2.91 -0.02 3.33 16 9 N -0.61 -27.27 3.03 -673.70 -2.04 -29.32 16 10 C 0.15 6.68 5.38 86.35 0.46 7.14 16 11 C 0.05 1.69 6.99 72.08 0.50 2.19 16 12 O -0.40 -14.24 10.74 -148.98 -1.60 -15.84 16 13 C 0.06 1.86 6.29 72.08 0.45 2.31 16 14 C 0.12 4.62 3.20 44.97 0.14 4.77 16 15 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 16 C 0.14 4.99 4.44 86.38 0.38 5.37 16 17 N -0.69 -25.83 3.75 -466.41 -1.75 -27.58 16 18 C 0.56 21.29 7.77 86.65 0.67 21.97 16 19 O -0.57 -23.34 14.47 -4.08 -0.06 -23.40 16 20 C -0.17 -5.96 5.94 -19.60 -0.12 -6.08 16 21 C 0.13 4.45 10.67 84.81 0.90 5.35 16 22 N -0.50 -16.13 10.32 -194.65 -2.01 -18.14 16 23 C 0.18 4.67 11.20 84.97 0.95 5.62 16 24 C -0.24 -6.13 6.52 22.98 0.15 -5.98 16 25 S 0.19 3.17 23.29 -56.49 -1.32 1.86 16 26 C -0.15 -2.83 11.10 66.69 0.74 -2.09 16 27 C -0.16 -4.23 9.43 21.57 0.20 -4.03 16 28 C 0.00 -0.05 5.88 -21.24 -0.12 -0.17 16 29 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 30 H 0.07 3.32 6.32 -2.38 -0.02 3.30 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.05 2.11 7.53 -2.39 -0.02 2.09 16 37 H 0.09 2.62 8.14 -2.38 -0.02 2.61 16 38 H 0.41 16.17 5.41 -92.71 -0.50 15.66 16 39 H 0.16 5.72 6.37 -2.91 -0.02 5.71 16 40 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 41 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.15 4.58 6.28 -2.91 -0.02 4.56 16 Total: -1.00 -64.54 353.73 0.43 -64.12 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.58 Total: 27.61 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 6.36 Total: 24.44 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -5.56 Total: -124.83 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.66 Total: -39.24 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.32 Total: 1.86 kcal Total: -64.54 0.43 -64.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051081211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.291 kcal (2) G-P(sol) polarization free energy of solvation -64.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds