Wall clock time and date at job start Wed Apr 1 2020 04:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00098 * 2 1 4 4 H 1.48506 * 109.46864 * 90.00054 * 3 2 1 5 5 H 1.48497 * 109.47161 * 210.00226 * 3 2 1 6 6 H 1.48499 * 109.47262 * 330.00352 * 3 2 1 7 7 C 1.38812 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00500 * 23.28283 * 7 2 1 9 9 N 1.36938 * 119.99455 * 203.28778 * 7 2 1 10 10 C 1.47165 * 136.00355 * 9.39990 * 9 7 2 11 11 C 1.52645 * 87.95263 * 206.72280 * 10 9 7 12 12 C 1.47182 * 135.99572 * 189.77201 * 9 7 2 13 13 C 1.52788 * 114.14754 * 220.84221 * 11 10 9 14 14 N 1.47371 * 108.05012 * 179.02148 * 13 11 10 15 15 C 1.34775 * 121.06755 * 228.20780 * 14 13 11 16 16 O 1.21721 * 120.00043 * 172.99333 * 15 14 13 17 17 C 1.46490 * 119.99785 * 352.99724 * 15 14 13 18 18 C 1.36111 * 125.70832 * 157.29863 * 17 15 14 19 19 C 1.42234 * 107.62611 * 179.90773 * 18 17 15 20 20 C 1.45587 * 140.78121 * 180.02562 * 19 18 17 21 21 C 1.31806 * 114.63532 * 180.29653 * 20 19 18 22 22 S 1.75353 * 111.24527 * 0.03060 * 21 20 19 23 23 C 1.38169 * 106.99298 * 0.35281 * 19 18 17 24 24 N 1.37466 * 108.16981 * 359.78543 * 23 19 18 25 25 H 0.96997 * 125.68484 * 179.97438 * 24 23 19 26 26 C 1.47117 * 117.86542 * 48.23142 * 14 13 11 27 27 C 1.53223 * 108.74729 * 307.69048 * 26 14 13 28 28 O 1.42379 * 114.12920 * 88.43143 * 11 10 9 29 29 H 0.96999 * 120.00440 * 174.93997 * 1 2 3 30 30 H 1.08997 * 113.48313 * 321.42291 * 10 9 7 31 31 H 1.09002 * 113.48724 * 91.93031 * 10 9 7 32 32 H 1.09001 * 113.48798 * 268.06993 * 12 9 7 33 33 H 1.08996 * 113.49344 * 38.52035 * 12 9 7 34 34 H 1.08991 * 109.74522 * 298.66485 * 13 11 10 35 35 H 1.09005 * 109.74340 * 59.34064 * 13 11 10 36 36 H 1.07998 * 126.18863 * 0.03701 * 18 17 15 37 37 H 1.08005 * 122.68166 * 0.27375 * 20 19 18 38 38 H 1.08002 * 124.38125 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.59227 * 67.47012 * 26 14 13 40 40 H 1.09009 * 109.59166 * 187.91361 * 26 14 13 41 41 H 1.09005 * 109.49565 * 174.18190 * 27 26 14 42 42 H 1.09003 * 109.49339 * 294.23266 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5477 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.5362 -2.0992 -0.3706 9 7 3.2959 -1.2507 0.4683 10 6 4.1971 -0.3333 1.1839 11 6 5.3690 -1.0726 0.5435 12 6 4.3849 -2.2408 0.4718 13 6 6.5479 -1.3107 1.4858 14 7 7.5848 -2.0484 0.7426 15 6 8.1715 -3.1423 1.2677 16 8 8.9307 -3.8102 0.5902 17 6 7.8953 -3.5273 2.6539 18 6 8.0411 -4.7760 3.1756 19 6 7.6702 -4.7156 4.5474 20 6 7.5562 -5.5661 5.7235 21 6 7.1281 -4.9503 6.8074 22 16 6.8182 -3.2532 6.4936 23 6 7.2991 -3.4105 4.8083 24 7 7.4376 -2.6855 3.6486 25 1 7.2455 -1.7403 3.5459 26 6 7.9594 -1.5522 -0.5908 27 6 6.6880 -1.3871 -1.4298 28 8 5.7593 -0.5569 -0.7250 29 1 -0.4851 -0.8367 -0.0741 30 1 4.1093 0.7033 0.8587 31 1 4.1556 -0.4411 2.2678 32 1 4.3948 -2.8725 1.3601 33 1 4.4548 -2.8130 -0.4532 34 1 6.9473 -0.3549 1.8246 35 1 6.2207 -1.8980 2.3438 36 1 8.3795 -5.6534 2.6446 37 1 7.8024 -6.6176 5.7089 38 1 6.9856 -5.4293 7.7649 39 1 8.4615 -0.5896 -0.4948 40 1 8.6253 -2.2678 -1.0733 41 1 6.9393 -0.9231 -2.3837 42 1 6.2401 -2.3648 -1.6078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053365551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:29 Heat of formation + Delta-G solvation = 95.298357 kcal Electronic energy + Delta-G solvation = -28706.356184 eV Core-core repulsion = 24782.728533 eV Total energy + Delta-G solvation = -3923.627651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.82380 -40.42797 -38.96920 -36.59967 -35.74708 -34.81352 -32.54343 -30.88334 -30.68203 -29.09232 -27.92786 -26.26440 -25.69987 -24.13517 -23.33099 -22.28778 -21.27316 -20.36852 -19.67702 -19.27391 -18.63516 -17.56936 -17.06914 -16.73809 -16.03569 -15.98671 -15.49555 -15.05735 -14.99516 -14.68904 -14.59076 -14.37896 -14.15832 -13.83323 -13.62796 -13.41248 -13.27913 -12.96548 -12.88208 -12.40786 -12.08381 -11.81252 -11.76205 -11.48814 -11.29511 -11.05019 -10.88268 -10.76920 -10.57783 -10.24820 -9.88888 -9.73140 -9.48646 -9.15651 -8.71093 -8.64347 -8.50596 -7.90797 -7.25839 -6.39164 -3.25793 0.82443 1.07424 1.16701 1.75519 2.49366 2.57829 2.86295 3.16653 3.37021 3.52836 3.67566 3.70364 4.09152 4.41898 4.52604 4.56947 4.60716 4.67773 4.75118 4.77381 4.98098 5.10816 5.11246 5.23328 5.31698 5.36951 5.40934 5.46672 5.61006 5.73649 5.85660 5.88292 5.94890 5.98397 6.09804 6.10964 6.20490 6.22318 6.33968 6.44587 6.84039 7.01331 7.03139 7.40202 7.79819 8.20704 8.91269 9.46023 10.30022 11.11261 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.003778 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.686883 B = 7409.415884 C = 9031.305671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.015 4.015 3 Si 1.054 2.946 4 H -0.294 1.294 5 H -0.274 1.274 6 H -0.295 1.295 7 C -0.314 4.314 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.120 3.880 11 C 0.060 3.940 12 C 0.104 3.896 13 C 0.076 3.924 14 N -0.609 5.609 15 C 0.594 3.406 16 O -0.525 6.525 17 C -0.005 4.005 18 C -0.068 4.068 19 C -0.161 4.161 20 C -0.070 4.070 21 C -0.222 4.222 22 S 0.137 5.863 23 C -0.010 4.010 24 N -0.527 5.527 25 H 0.424 0.576 26 C 0.080 3.920 27 C 0.045 3.955 28 O -0.332 6.332 29 H 0.263 0.737 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.682 -6.354 10.702 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.216 4.216 3 Si 0.886 3.114 4 H -0.221 1.221 5 H -0.200 1.200 6 H -0.222 1.222 7 C -0.439 4.439 8 H 0.097 0.903 9 N -0.337 5.337 10 C -0.006 4.006 11 C 0.018 3.982 12 C -0.023 4.023 13 C -0.049 4.049 14 N -0.343 5.343 15 C 0.383 3.617 16 O -0.401 6.401 17 C -0.118 4.118 18 C -0.096 4.096 19 C -0.174 4.174 20 C -0.101 4.101 21 C -0.356 4.356 22 S 0.391 5.609 23 C -0.239 4.239 24 N -0.136 5.136 25 H 0.267 0.733 26 C -0.042 4.042 27 C -0.033 4.033 28 O -0.250 6.250 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.188 0.812 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.030 -3.584 10.989 22.265 hybrid contribution 0.544 -2.596 -0.793 2.768 sum 19.574 -6.180 10.196 22.920 Atomic orbital electron populations 1.70943 1.05625 1.29918 1.49547 1.25729 0.96166 1.00834 0.98848 0.83916 0.75114 0.75776 0.76593 1.22144 1.19992 1.22218 1.19934 0.85256 0.96787 1.41949 0.90279 1.45601 1.11327 1.12726 1.64012 1.22539 0.85655 0.96845 0.95563 1.23003 0.91042 0.99076 0.85128 1.22846 0.86948 0.92979 0.99534 1.22712 0.88821 0.97158 0.96196 1.48070 1.39414 1.27966 1.18825 1.16983 0.80156 0.79986 0.84605 1.90849 1.36958 1.51694 1.60616 1.19878 1.11404 0.91334 0.89185 1.20703 1.01449 0.95883 0.91572 1.19370 1.10915 0.91893 0.95202 1.20318 0.99921 1.00060 0.89806 1.24889 1.10810 0.96740 1.03146 1.84039 1.71963 1.08780 0.96115 1.23662 1.10477 0.95456 0.94261 1.42149 1.54325 1.11088 1.05990 0.73262 1.22365 0.98475 1.00728 0.82647 1.22974 0.88406 0.96674 0.95246 1.88041 1.61872 1.45447 1.29598 0.92696 0.92069 0.92660 0.93731 0.93257 0.89998 0.88341 0.82609 0.83741 0.81218 0.90285 0.87764 0.87414 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.80 13.70 55.49 0.76 -28.04 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 1.05 26.44 25.32 -169.99 -4.30 22.14 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.27 -6.60 6.58 56.52 0.37 -6.23 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.31 -9.06 10.95 -15.06 -0.16 -9.22 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 N -0.61 -14.93 3.58 -184.93 -0.66 -15.59 16 10 C 0.12 2.44 6.59 -8.35 -0.05 2.38 16 11 C 0.06 1.02 1.28 -90.95 -0.12 0.91 16 12 C 0.10 2.06 7.91 -8.20 -0.06 2.00 16 13 C 0.08 0.95 4.46 -3.67 -0.02 0.94 16 14 N -0.61 -7.77 3.03 -174.09 -0.53 -8.30 16 15 C 0.59 8.19 7.62 -12.94 -0.10 8.10 16 16 O -0.52 -8.44 16.41 5.17 0.08 -8.36 16 17 C -0.01 -0.07 6.32 -82.47 -0.52 -0.59 16 18 C -0.07 -0.83 10.66 -38.81 -0.41 -1.25 16 19 C -0.16 -1.87 6.80 -105.46 -0.72 -2.59 16 20 C -0.07 -0.65 10.42 -38.55 -0.40 -1.05 16 21 C -0.22 -1.81 11.03 28.84 0.32 -1.49 16 22 S 0.14 1.26 23.24 -107.50 -2.50 -1.24 16 23 C -0.01 -0.11 8.41 -15.05 -0.13 -0.24 16 24 N -0.53 -5.83 4.85 -7.94 -0.04 -5.87 16 25 H 0.42 3.90 6.31 -40.82 -0.26 3.64 16 26 C 0.08 0.93 6.61 -3.59 -0.02 0.91 16 27 C 0.04 0.60 6.90 37.27 0.26 0.86 16 28 O -0.33 -5.91 10.53 -35.23 -0.37 -6.29 16 29 H 0.26 8.13 8.73 -40.82 -0.36 7.78 16 30 H 0.06 1.32 3.76 -51.93 -0.20 1.12 16 31 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 32 H 0.05 0.84 7.93 -51.93 -0.41 0.43 16 33 H 0.05 1.01 7.36 -51.93 -0.38 0.62 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.18 4.41 -51.93 -0.23 0.95 16 36 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.18 7.05 -51.92 -0.37 0.82 16 41 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 0.85 7.31 -51.93 -0.38 0.47 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -35.33 350.52 -9.30 -44.63 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.78 Total: 2.51 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.24 Total: -0.89 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.47 Total: -57.79 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.29 Total: -14.64 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -4.30 Total: 22.14 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.50 Total: -1.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.33 -9.30 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053365551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.931 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds