Wall clock time and date at job start Wed Apr 1 2020 04:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00098 * 2 1 4 4 H 1.48506 * 109.46864 * 90.00054 * 3 2 1 5 5 H 1.48497 * 109.47161 * 210.00226 * 3 2 1 6 6 H 1.48499 * 109.47262 * 330.00352 * 3 2 1 7 7 C 1.38812 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00500 * 23.28283 * 7 2 1 9 9 N 1.36938 * 119.99455 * 203.28778 * 7 2 1 10 10 C 1.47165 * 136.00355 * 9.39990 * 9 7 2 11 11 C 1.52645 * 87.95263 * 206.72280 * 10 9 7 12 12 C 1.47182 * 135.99572 * 189.77201 * 9 7 2 13 13 C 1.52788 * 114.14754 * 220.84221 * 11 10 9 14 14 N 1.47371 * 108.05012 * 179.02148 * 13 11 10 15 15 C 1.34775 * 121.06755 * 228.20780 * 14 13 11 16 16 O 1.21721 * 120.00043 * 172.99333 * 15 14 13 17 17 C 1.46490 * 119.99785 * 352.99724 * 15 14 13 18 18 C 1.36111 * 125.70832 * 157.29863 * 17 15 14 19 19 C 1.42234 * 107.62611 * 179.90773 * 18 17 15 20 20 C 1.45587 * 140.78121 * 180.02562 * 19 18 17 21 21 C 1.31806 * 114.63532 * 180.29653 * 20 19 18 22 22 S 1.75353 * 111.24527 * 0.03060 * 21 20 19 23 23 C 1.38169 * 106.99298 * 0.35281 * 19 18 17 24 24 N 1.37466 * 108.16981 * 359.78543 * 23 19 18 25 25 H 0.96997 * 125.68484 * 179.97438 * 24 23 19 26 26 C 1.47117 * 117.86542 * 48.23142 * 14 13 11 27 27 C 1.53223 * 108.74729 * 307.69048 * 26 14 13 28 28 O 1.42379 * 114.12920 * 88.43143 * 11 10 9 29 29 H 0.96999 * 120.00440 * 174.93997 * 1 2 3 30 30 H 1.08997 * 113.48313 * 321.42291 * 10 9 7 31 31 H 1.09002 * 113.48724 * 91.93031 * 10 9 7 32 32 H 1.09001 * 113.48798 * 268.06993 * 12 9 7 33 33 H 1.08996 * 113.49344 * 38.52035 * 12 9 7 34 34 H 1.08991 * 109.74522 * 298.66485 * 13 11 10 35 35 H 1.09005 * 109.74340 * 59.34064 * 13 11 10 36 36 H 1.07998 * 126.18863 * 0.03701 * 18 17 15 37 37 H 1.08005 * 122.68166 * 0.27375 * 20 19 18 38 38 H 1.08002 * 124.38125 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.59227 * 67.47012 * 26 14 13 40 40 H 1.09009 * 109.59166 * 187.91361 * 26 14 13 41 41 H 1.09005 * 109.49565 * 174.18190 * 27 26 14 42 42 H 1.09003 * 109.49339 * 294.23266 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5477 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.5362 -2.0992 -0.3706 9 7 3.2959 -1.2507 0.4683 10 6 4.1971 -0.3333 1.1839 11 6 5.3690 -1.0726 0.5435 12 6 4.3849 -2.2408 0.4718 13 6 6.5479 -1.3107 1.4858 14 7 7.5848 -2.0484 0.7426 15 6 8.1715 -3.1423 1.2677 16 8 8.9307 -3.8102 0.5902 17 6 7.8953 -3.5273 2.6539 18 6 8.0411 -4.7760 3.1756 19 6 7.6702 -4.7156 4.5474 20 6 7.5562 -5.5661 5.7235 21 6 7.1281 -4.9503 6.8074 22 16 6.8182 -3.2532 6.4936 23 6 7.2991 -3.4105 4.8083 24 7 7.4376 -2.6855 3.6486 25 1 7.2455 -1.7403 3.5459 26 6 7.9594 -1.5522 -0.5908 27 6 6.6880 -1.3871 -1.4298 28 8 5.7593 -0.5569 -0.7250 29 1 -0.4851 -0.8367 -0.0741 30 1 4.1093 0.7033 0.8587 31 1 4.1556 -0.4411 2.2678 32 1 4.3948 -2.8725 1.3601 33 1 4.4548 -2.8130 -0.4532 34 1 6.9473 -0.3549 1.8246 35 1 6.2207 -1.8980 2.3438 36 1 8.3795 -5.6534 2.6446 37 1 7.8024 -6.6176 5.7089 38 1 6.9856 -5.4293 7.7649 39 1 8.4615 -0.5896 -0.4948 40 1 8.6253 -2.2678 -1.0733 41 1 6.9393 -0.9231 -2.3837 42 1 6.2401 -2.3648 -1.6078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053365551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:28 Heat of formation + Delta-G solvation = 69.882199 kcal Electronic energy + Delta-G solvation = -28707.458311 eV Core-core repulsion = 24782.728533 eV Total energy + Delta-G solvation = -3924.729779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.76215 -41.63663 -40.14924 -38.00657 -36.58149 -35.85043 -34.64664 -32.07968 -31.63413 -30.30948 -29.03434 -27.79853 -27.27266 -25.16218 -24.22934 -23.60565 -22.61108 -21.26601 -20.81404 -20.39951 -19.78629 -19.40682 -18.06196 -17.97889 -17.40793 -17.06947 -16.57281 -16.30858 -16.00695 -15.83817 -15.67969 -15.45747 -15.43482 -15.17793 -14.96143 -14.88799 -14.50225 -14.18611 -13.77257 -13.52652 -13.40385 -12.93954 -12.86344 -12.80355 -12.69142 -12.52485 -12.21309 -11.93845 -11.74581 -11.60533 -11.48307 -11.21497 -10.92165 -10.70998 -10.57059 -9.83205 -9.31526 -9.26624 -8.70467 -8.66268 -5.48562 0.05612 0.18378 0.42164 1.07505 1.37437 1.48660 1.54756 1.70627 1.73432 2.05041 2.25296 2.43916 2.50445 2.79261 3.10717 3.16300 3.34710 3.46258 3.70246 3.78720 3.93985 4.03650 4.10257 4.17925 4.31236 4.37664 4.42181 4.45611 4.50536 4.56359 4.62408 4.65156 4.75259 4.80599 4.85043 5.01058 5.14425 5.17074 5.24706 5.41574 5.62203 5.91086 5.97024 6.10083 6.13945 6.64040 6.76791 7.28584 8.21802 8.81807 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.003778 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.686883 B = 7409.415884 C = 9031.305671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 1.100 2.900 4 H -0.265 1.265 5 H -0.260 1.260 6 H -0.302 1.302 7 C -0.304 4.304 8 H 0.041 0.959 9 N -0.644 5.644 10 C 0.111 3.889 11 C 0.083 3.917 12 C 0.100 3.900 13 C 0.086 3.914 14 N -0.608 5.608 15 C 0.596 3.404 16 O -0.554 6.554 17 C -0.020 4.020 18 C -0.080 4.080 19 C -0.178 4.178 20 C -0.087 4.087 21 C -0.212 4.212 22 S 0.152 5.848 23 C -0.024 4.024 24 N -0.522 5.522 25 H 0.432 0.568 26 C 0.084 3.916 27 C 0.042 3.958 28 O -0.359 6.359 29 H 0.247 0.753 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.201 0.799 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.368 -5.444 12.773 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.265 4.265 3 Si 0.925 3.075 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.230 1.230 7 C -0.431 4.431 8 H 0.059 0.941 9 N -0.372 5.372 10 C -0.014 4.014 11 C 0.041 3.959 12 C -0.026 4.026 13 C -0.038 4.038 14 N -0.341 5.341 15 C 0.386 3.614 16 O -0.432 6.432 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.191 4.191 20 C -0.117 4.117 21 C -0.346 4.346 22 S 0.405 5.595 23 C -0.253 4.253 24 N -0.131 5.131 25 H 0.277 0.723 26 C -0.037 4.037 27 C -0.034 4.034 28 O -0.277 6.277 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.218 0.782 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.151 0.849 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 21.761 -2.689 13.083 25.533 hybrid contribution -0.281 -3.060 -1.416 3.384 sum 21.480 -5.749 11.667 25.111 Atomic orbital electron populations 1.71050 1.06877 1.29045 1.52894 1.27025 0.96150 1.04323 0.99011 0.83345 0.74204 0.71748 0.78185 1.19111 1.18548 1.23046 1.19764 0.87409 0.95372 1.40597 0.94144 1.45675 1.10831 1.15598 1.65124 1.22830 0.85623 0.95921 0.96994 1.22623 0.91776 0.95719 0.85831 1.23036 0.86730 0.93570 0.99282 1.22667 0.87146 0.99157 0.94848 1.48100 1.39057 1.27677 1.19231 1.17090 0.79750 0.79654 0.84892 1.90832 1.38387 1.52530 1.61478 1.19738 1.12611 0.91847 0.89051 1.20905 1.01491 0.96130 0.92282 1.19716 1.11061 0.92796 0.95506 1.20556 1.00812 1.01068 0.89276 1.25312 1.09082 0.96122 1.04059 1.84033 1.71441 1.09624 0.94358 1.24051 1.10449 0.95616 0.95183 1.42032 1.54112 1.11316 1.05605 0.72317 1.22421 0.97473 1.02010 0.81817 1.23186 0.88280 0.95617 0.96350 1.87992 1.63080 1.46479 1.30134 0.94321 0.92719 0.89574 0.92398 0.94717 0.86279 0.87524 0.82384 0.81797 0.78236 0.87788 0.87452 0.84905 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.76 13.70 21.65 0.30 -61.46 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 1.10 53.14 25.32 68.60 1.74 54.87 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.26 -11.84 6.58 99.48 0.65 -11.18 16 6 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 7 C -0.30 -18.07 10.95 84.03 0.92 -17.15 16 8 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 9 N -0.64 -31.38 3.58 -739.86 -2.65 -34.03 16 10 C 0.11 4.23 6.59 83.23 0.55 4.78 16 11 C 0.08 2.63 1.28 -11.01 -0.01 2.62 16 12 C 0.10 3.90 7.91 83.32 0.66 4.56 16 13 C 0.09 1.86 4.46 86.14 0.38 2.25 16 14 N -0.61 -13.90 3.03 -822.89 -2.49 -16.39 16 15 C 0.60 15.48 7.62 86.39 0.66 16.14 16 16 O -0.55 -17.30 16.41 -4.42 -0.07 -17.37 16 17 C -0.02 -0.47 6.32 39.81 0.25 -0.22 16 18 C -0.08 -1.89 10.66 22.77 0.24 -1.64 16 19 C -0.18 -3.85 6.80 -20.41 -0.14 -3.99 16 20 C -0.09 -1.41 10.42 23.40 0.24 -1.16 16 21 C -0.21 -2.82 11.03 67.05 0.74 -2.08 16 22 S 0.15 2.38 23.24 -56.49 -1.31 1.07 16 23 C -0.02 -0.50 8.41 83.79 0.70 0.21 16 24 N -0.52 -10.31 4.85 -179.04 -0.87 -11.18 16 25 H 0.43 6.57 6.31 -92.71 -0.59 5.98 16 26 C 0.08 1.73 6.61 86.34 0.57 2.30 16 27 C 0.04 1.05 6.90 72.06 0.50 1.55 16 28 O -0.36 -11.93 10.53 -148.98 -1.57 -13.50 16 29 H 0.25 16.13 8.73 -92.71 -0.81 15.32 16 30 H 0.05 2.18 3.76 -2.39 -0.01 2.17 16 31 H 0.09 2.78 8.09 -2.39 -0.02 2.76 16 32 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 33 H 0.03 1.43 7.36 -2.39 -0.02 1.42 16 34 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 2.19 4.41 -2.38 -0.01 2.18 16 36 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 38 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 2.20 7.05 -2.38 -0.02 2.18 16 41 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 42 H 0.04 1.18 7.31 -2.39 -0.02 1.16 16 Total: -1.00 -79.46 350.52 0.22 -79.25 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.41 Total: 14.41 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 6.73 Total: 4.33 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -5.71 Total: -123.05 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.64 Total: -30.88 kcal Atomic # 14 Polarization: 53.14 SS G_CDS: 1.74 Total: 54.87 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.31 Total: 1.07 kcal Total: -79.46 0.22 -79.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053365551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.127 kcal (2) G-P(sol) polarization free energy of solvation -79.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds