Wall clock time and date at job start Wed Apr 1 2020 04:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48492 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47508 * 300.00354 * 3 2 1 6 6 H 1.48509 * 109.47110 * 59.99853 * 3 2 1 7 7 C 1.38807 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00231 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.47673 * 134.46041 * 180.02562 * 9 7 2 11 11 C 1.53456 * 85.98134 * 204.29361 * 10 9 7 12 12 C 1.47675 * 134.46685 * 359.97438 * 9 7 2 13 13 C 1.52896 * 113.50625 * 222.32134 * 11 10 9 14 14 N 1.47339 * 108.05905 * 276.94385 * 13 11 10 15 15 C 1.34775 * 121.04761 * 131.65966 * 14 13 11 16 16 O 1.21741 * 119.99721 * 179.48483 * 15 14 13 17 17 C 1.46455 * 120.00195 * 359.47943 * 15 14 13 18 18 C 1.37471 * 125.80375 * 207.31330 * 17 15 14 19 19 C 1.40658 * 107.55349 * 179.97438 * 18 17 15 20 20 S 1.76019 * 142.39403 * 179.97438 * 19 18 17 21 21 C 1.75591 * 91.30955 * 180.02562 * 20 19 18 22 22 C 1.32769 * 110.47272 * 359.97438 * 21 20 19 23 23 C 1.38244 * 108.03432 * 0.02562 * 19 18 17 24 24 N 1.37913 * 125.80703 * 27.01018 * 17 15 14 25 25 H 0.96994 * 125.68174 * 0.03589 * 24 17 15 26 26 C 1.47118 * 117.89619 * 311.62911 * 14 13 11 27 27 C 1.53230 * 108.73244 * 52.21682 * 26 14 13 28 28 O 1.42488 * 113.76997 * 91.27311 * 11 10 9 29 29 H 0.96992 * 120.00471 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.79322 * 90.02414 * 10 9 7 31 31 H 1.09006 * 113.89830 * 318.57426 * 10 9 7 32 32 H 1.09000 * 113.78381 * 41.43565 * 12 9 7 33 33 H 1.08999 * 113.78933 * 269.97293 * 12 9 7 34 34 H 1.09000 * 109.73991 * 36.58274 * 13 11 10 35 35 H 1.09001 * 109.74431 * 157.25114 * 13 11 10 36 36 H 1.07995 * 126.22197 * 359.97438 * 18 17 15 37 37 H 1.08002 * 124.76293 * 180.02562 * 21 20 19 38 38 H 1.08005 * 122.15825 * 180.02562 * 22 21 20 39 39 H 1.09007 * 109.59664 * 292.44582 * 26 14 13 40 40 H 1.08994 * 109.59248 * 171.99379 * 26 14 13 41 41 H 1.08997 * 109.48963 * 65.83434 * 27 26 14 42 42 H 1.09001 * 109.48929 * 185.88413 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 1.7213 -3.8107 -0.0019 11 6 0.3487 -4.0806 -0.6329 12 6 -0.1043 -2.7569 -0.0019 13 6 -0.3583 -5.3064 -0.0537 14 7 0.1625 -6.5012 -0.7409 15 6 0.5644 -7.5833 -0.0452 16 8 0.9828 -8.5638 -0.6330 17 6 0.4979 -7.5795 1.4178 18 6 1.3030 -8.3075 2.2614 19 6 0.9102 -8.0152 3.5800 20 16 1.2751 -8.3929 5.2600 21 6 0.0070 -7.3152 5.8198 22 6 -0.6065 -6.7452 4.7895 23 6 -0.1334 -7.1101 3.5250 24 7 -0.3793 -6.8406 2.1837 25 1 -1.0568 -6.2358 1.8431 26 6 0.2293 -6.4758 -2.2103 27 6 0.9789 -5.2128 -2.6471 28 8 0.3587 -4.0658 -2.0577 29 1 -0.4850 0.8399 0.0004 30 1 1.8379 -4.2350 0.9954 31 1 2.5600 -4.0357 -0.6608 32 1 -0.7167 -2.1421 -0.6615 33 1 -0.5299 -2.8681 0.9954 34 1 -0.1549 -5.3781 1.0147 35 1 -1.4325 -5.2243 -0.2193 36 1 2.0934 -8.9813 1.9654 37 1 -0.2389 -7.1398 6.8568 38 1 -1.4190 -6.0456 4.9195 39 1 -0.7800 -6.4626 -2.6220 40 1 0.7605 -7.3580 -2.5673 41 1 2.0165 -5.2740 -2.3191 42 1 0.9452 -5.1272 -3.7333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053496172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:53 Heat of formation + Delta-G solvation = 87.145929 kcal Electronic energy + Delta-G solvation = -28673.122532 eV Core-core repulsion = 24749.141365 eV Total energy + Delta-G solvation = -3923.981167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73549 -40.18991 -38.75393 -36.23525 -35.56495 -34.70320 -32.33560 -31.26891 -30.32509 -28.83658 -27.62618 -26.19847 -25.24895 -24.03133 -23.30618 -22.42235 -21.34027 -20.78906 -19.48000 -18.94421 -18.26835 -16.94012 -16.85038 -16.46884 -15.91226 -15.73437 -15.40487 -14.99645 -14.73352 -14.57400 -14.36676 -14.11498 -14.05048 -13.71169 -13.52768 -13.41138 -12.99063 -12.73903 -12.43714 -12.24757 -11.99018 -11.65064 -11.47920 -11.28990 -10.99762 -10.93669 -10.89624 -10.83417 -10.42274 -10.17234 -9.93097 -9.81614 -9.74042 -9.43159 -8.91364 -8.53569 -8.20222 -7.81325 -6.97552 -5.83346 -3.15471 0.62572 1.39271 1.79784 1.93163 2.55415 2.61855 2.75579 3.17418 3.36119 3.41758 3.44107 3.93677 4.29550 4.36836 4.59143 4.75554 4.80447 4.82168 4.95312 5.07583 5.12204 5.20314 5.25660 5.28917 5.40999 5.50702 5.52599 5.58260 5.74918 5.78649 5.84242 5.86702 6.17080 6.18578 6.30591 6.32837 6.39350 6.49629 6.78457 7.06340 7.06883 7.15867 7.41321 7.68971 7.89853 7.90971 8.97434 9.63970 10.47838 11.34281 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.003642 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.702826 B = 7686.883380 C = 9633.023851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.102 3.898 11 C 0.055 3.945 12 C 0.182 3.818 13 C 0.068 3.932 14 N -0.605 5.605 15 C 0.590 3.410 16 O -0.528 6.528 17 C 0.014 3.986 18 C -0.075 4.075 19 C -0.217 4.217 20 S 0.126 5.874 21 C -0.188 4.188 22 C -0.112 4.112 23 C 0.064 3.936 24 N -0.542 5.542 25 H 0.424 0.576 26 C 0.080 3.920 27 C 0.044 3.956 28 O -0.333 6.333 29 H 0.254 0.746 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.143 0.857 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.213 -16.853 6.217 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.324 5.324 10 C -0.025 4.025 11 C 0.013 3.987 12 C 0.056 3.944 13 C -0.056 4.056 14 N -0.338 5.338 15 C 0.379 3.621 16 O -0.405 6.405 17 C -0.100 4.100 18 C -0.105 4.105 19 C -0.337 4.337 20 S 0.385 5.615 21 C -0.324 4.324 22 C -0.145 4.145 23 C -0.054 4.054 24 N -0.150 5.150 25 H 0.268 0.732 26 C -0.042 4.042 27 C -0.033 4.033 28 O -0.250 6.250 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.173 0.827 37 H 0.190 0.810 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.116 -17.663 6.400 18.905 hybrid contribution -0.841 2.048 -0.558 2.284 sum -2.958 -15.614 5.842 16.931 Atomic orbital electron populations 1.69786 1.05024 1.25390 1.56623 1.24752 0.95689 0.97510 1.02179 0.86032 0.78772 0.83562 0.77294 1.20447 1.21590 1.21698 1.19026 0.90279 0.81631 1.43958 0.90116 1.45701 1.01672 0.99062 1.85986 1.23033 0.95070 0.87375 0.97018 1.23743 0.97841 0.94888 0.82205 1.22225 0.89243 0.86677 0.96286 1.22956 0.99407 0.85032 0.98185 1.48128 1.63269 1.14903 1.07527 1.16999 0.77883 0.82680 0.84561 1.90849 1.47097 1.33127 1.69394 1.20157 0.98192 1.00869 0.90804 1.20333 1.01042 1.01381 0.87791 1.22659 1.04761 1.07945 0.98303 1.83868 1.36594 1.46902 0.94106 1.25218 1.01375 1.03210 1.02637 1.18938 1.03464 1.03913 0.88187 1.18417 0.99782 1.01773 0.85451 1.42809 1.31126 1.37445 1.03571 0.73154 1.22363 1.02306 1.00670 0.78880 1.22932 0.96433 0.85030 0.98946 1.88063 1.78865 1.40622 1.17495 0.93588 0.94432 0.93463 0.89417 0.94139 0.88386 0.90018 0.82748 0.81023 0.83952 0.90368 0.88000 0.92606 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 11.39 55.49 0.63 -26.03 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.22 -6.18 10.70 -15.06 -0.16 -6.35 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.09 3.70 -180.22 -0.67 -15.75 16 10 C 0.10 2.08 8.08 -3.17 -0.03 2.05 16 11 C 0.06 1.00 1.21 -90.28 -0.11 0.89 16 12 C 0.18 4.04 6.90 -3.16 -0.02 4.02 16 13 C 0.07 0.94 4.70 -3.64 -0.02 0.92 16 14 N -0.61 -8.29 3.03 -174.05 -0.53 -8.81 16 15 C 0.59 8.66 7.63 -12.95 -0.10 8.57 16 16 O -0.53 -8.90 16.44 5.15 0.08 -8.82 16 17 C 0.01 0.19 6.38 -82.10 -0.52 -0.33 16 18 C -0.07 -1.00 10.71 -38.95 -0.42 -1.41 16 19 C -0.22 -2.74 7.26 -38.67 -0.28 -3.03 16 20 S 0.13 1.27 23.31 -107.50 -2.51 -1.24 16 21 C -0.19 -1.67 11.13 28.86 0.32 -1.35 16 22 C -0.11 -1.12 10.16 -40.85 -0.42 -1.54 16 23 C 0.06 0.78 7.67 -84.00 -0.64 0.14 16 24 N -0.54 -6.48 4.90 -7.34 -0.04 -6.51 16 25 H 0.42 4.31 6.28 -40.82 -0.26 4.06 16 26 C 0.08 1.00 6.59 -3.59 -0.02 0.98 16 27 C 0.04 0.62 6.88 37.28 0.26 0.88 16 28 O -0.33 -6.18 10.52 -35.23 -0.37 -6.55 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.75 7.94 -51.93 -0.41 0.34 16 31 H 0.05 0.98 7.28 -51.93 -0.38 0.60 16 32 H 0.09 2.22 7.17 -51.93 -0.37 1.84 16 33 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.10 1.29 3.95 -51.93 -0.21 1.08 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.24 7.06 -51.93 -0.37 0.87 16 41 H 0.06 0.83 7.19 -51.93 -0.37 0.45 16 42 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -33.51 355.38 -10.18 -43.69 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.87 Total: 3.50 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -2.26 Total: 4.22 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.60 Total: -57.10 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.29 Total: -15.37 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.51 Total: -1.24 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.51 -10.18 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053496172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.838 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds