Wall clock time and date at job start Wed Apr 1 2020 04:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48492 * 109.47356 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47508 * 300.00354 * 3 2 1 6 6 H 1.48509 * 109.47110 * 59.99853 * 3 2 1 7 7 C 1.38807 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00231 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.47673 * 134.46041 * 180.02562 * 9 7 2 11 11 C 1.53456 * 85.98134 * 204.29361 * 10 9 7 12 12 C 1.47675 * 134.46685 * 359.97438 * 9 7 2 13 13 C 1.52896 * 113.50625 * 222.32134 * 11 10 9 14 14 N 1.47339 * 108.05905 * 276.94385 * 13 11 10 15 15 C 1.34775 * 121.04761 * 131.65966 * 14 13 11 16 16 O 1.21741 * 119.99721 * 179.48483 * 15 14 13 17 17 C 1.46455 * 120.00195 * 359.47943 * 15 14 13 18 18 C 1.37471 * 125.80375 * 207.31330 * 17 15 14 19 19 C 1.40658 * 107.55349 * 179.97438 * 18 17 15 20 20 S 1.76019 * 142.39403 * 179.97438 * 19 18 17 21 21 C 1.75591 * 91.30955 * 180.02562 * 20 19 18 22 22 C 1.32769 * 110.47272 * 359.97438 * 21 20 19 23 23 C 1.38244 * 108.03432 * 0.02562 * 19 18 17 24 24 N 1.37913 * 125.80703 * 27.01018 * 17 15 14 25 25 H 0.96994 * 125.68174 * 0.03589 * 24 17 15 26 26 C 1.47118 * 117.89619 * 311.62911 * 14 13 11 27 27 C 1.53230 * 108.73244 * 52.21682 * 26 14 13 28 28 O 1.42488 * 113.76997 * 91.27311 * 11 10 9 29 29 H 0.96992 * 120.00471 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.79322 * 90.02414 * 10 9 7 31 31 H 1.09006 * 113.89830 * 318.57426 * 10 9 7 32 32 H 1.09000 * 113.78381 * 41.43565 * 12 9 7 33 33 H 1.08999 * 113.78933 * 269.97293 * 12 9 7 34 34 H 1.09000 * 109.73991 * 36.58274 * 13 11 10 35 35 H 1.09001 * 109.74431 * 157.25114 * 13 11 10 36 36 H 1.07995 * 126.22197 * 359.97438 * 18 17 15 37 37 H 1.08002 * 124.76293 * 180.02562 * 21 20 19 38 38 H 1.08005 * 122.15825 * 180.02562 * 22 21 20 39 39 H 1.09007 * 109.59664 * 292.44582 * 26 14 13 40 40 H 1.08994 * 109.59248 * 171.99379 * 26 14 13 41 41 H 1.08997 * 109.48963 * 65.83434 * 27 26 14 42 42 H 1.09001 * 109.48929 * 185.88413 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 1.7213 -3.8107 -0.0019 11 6 0.3487 -4.0806 -0.6329 12 6 -0.1043 -2.7569 -0.0019 13 6 -0.3583 -5.3064 -0.0537 14 7 0.1625 -6.5012 -0.7409 15 6 0.5644 -7.5833 -0.0452 16 8 0.9828 -8.5638 -0.6330 17 6 0.4979 -7.5795 1.4178 18 6 1.3030 -8.3075 2.2614 19 6 0.9102 -8.0152 3.5800 20 16 1.2751 -8.3929 5.2600 21 6 0.0070 -7.3152 5.8198 22 6 -0.6065 -6.7452 4.7895 23 6 -0.1334 -7.1101 3.5250 24 7 -0.3793 -6.8406 2.1837 25 1 -1.0568 -6.2358 1.8431 26 6 0.2293 -6.4758 -2.2103 27 6 0.9789 -5.2128 -2.6471 28 8 0.3587 -4.0658 -2.0577 29 1 -0.4850 0.8399 0.0004 30 1 1.8379 -4.2350 0.9954 31 1 2.5600 -4.0357 -0.6608 32 1 -0.7167 -2.1421 -0.6615 33 1 -0.5299 -2.8681 0.9954 34 1 -0.1549 -5.3781 1.0147 35 1 -1.4325 -5.2243 -0.2193 36 1 2.0934 -8.9813 1.9654 37 1 -0.2389 -7.1398 6.8568 38 1 -1.4190 -6.0456 4.9195 39 1 -0.7800 -6.4626 -2.6220 40 1 0.7605 -7.3580 -2.5673 41 1 2.0165 -5.2740 -2.3191 42 1 0.9452 -5.1272 -3.7333 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053496172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:52 Heat of formation + Delta-G solvation = 65.003679 kcal Electronic energy + Delta-G solvation = -28674.082692 eV Core-core repulsion = 24749.141365 eV Total energy + Delta-G solvation = -3924.941327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.73316 -41.44521 -40.04567 -37.74308 -36.47953 -35.84832 -34.28499 -32.30051 -31.59195 -30.12811 -28.84036 -27.77229 -26.92932 -25.11700 -24.43441 -23.79125 -22.57167 -21.72707 -20.70822 -20.15917 -19.33445 -18.79681 -17.94716 -17.67696 -17.14623 -16.99612 -16.61153 -16.42863 -16.05469 -15.72090 -15.55970 -15.32204 -15.11049 -14.99295 -14.96145 -14.58905 -14.21410 -14.06908 -13.85633 -13.44262 -13.20839 -12.96620 -12.81435 -12.80399 -12.59854 -12.41783 -12.18996 -11.95085 -11.78261 -11.74837 -11.64419 -11.20911 -11.04838 -10.87007 -10.74936 -9.76254 -9.10613 -8.96455 -8.64716 -7.93764 -5.26660 -0.25201 0.58086 0.83279 1.15042 1.44645 1.45454 1.50544 1.55449 1.75907 1.79397 2.12686 2.43742 2.60051 3.18207 3.23481 3.29364 3.48282 3.62646 3.76985 3.80734 3.98730 4.04853 4.15976 4.24854 4.37922 4.43651 4.48810 4.52510 4.61745 4.65606 4.75035 4.78824 4.84488 4.92895 5.08881 5.10697 5.14211 5.18121 5.41829 5.45511 5.55744 5.88135 6.00985 6.24447 6.29341 6.78314 6.88760 7.56031 8.47888 9.23154 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.003642 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.702826 B = 7686.883380 C = 9633.023851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.057 4.057 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.238 4.238 8 H 0.077 0.923 9 N -0.630 5.630 10 C 0.102 3.898 11 C 0.081 3.919 12 C 0.179 3.821 13 C 0.081 3.919 14 N -0.603 5.603 15 C 0.594 3.406 16 O -0.554 6.554 17 C -0.005 4.005 18 C -0.083 4.083 19 C -0.247 4.247 20 S 0.135 5.865 21 C -0.170 4.170 22 C -0.132 4.132 23 C 0.063 3.937 24 N -0.537 5.537 25 H 0.431 0.569 26 C 0.083 3.917 27 C 0.043 3.957 28 O -0.362 6.362 29 H 0.251 0.749 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.156 0.844 37 H 0.206 0.794 38 H 0.165 0.835 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.044 0.956 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -17.555 7.332 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.251 4.251 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.366 4.366 8 H 0.095 0.905 9 N -0.356 5.356 10 C -0.024 4.024 11 C 0.039 3.961 12 C 0.053 3.947 13 C -0.043 4.043 14 N -0.336 5.336 15 C 0.383 3.617 16 O -0.433 6.433 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.367 4.367 20 S 0.394 5.606 21 C -0.306 4.306 22 C -0.164 4.164 23 C -0.056 4.056 24 N -0.146 5.146 25 H 0.277 0.723 26 C -0.038 4.038 27 C -0.034 4.034 28 O -0.280 6.280 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.174 0.826 37 H 0.223 0.777 38 H 0.182 0.818 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.063 0.937 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.587 -18.391 7.500 20.029 hybrid contribution -0.645 2.205 -0.842 2.447 sum -3.233 -16.186 6.659 17.798 Atomic orbital electron populations 1.69951 1.06202 1.25724 1.57744 1.25525 0.96584 1.00496 1.02502 0.85052 0.78058 0.79525 0.76911 1.19425 1.21773 1.21501 1.19335 0.90589 0.83259 1.43407 0.90498 1.46035 1.03255 1.00028 1.86271 1.23148 0.96513 0.85110 0.97588 1.23217 0.95829 0.94777 0.82315 1.22158 0.87583 0.88442 0.96481 1.22822 1.00270 0.82964 0.98251 1.48137 1.62958 1.14458 1.08018 1.17085 0.77227 0.82409 0.84941 1.90829 1.48382 1.34072 1.70032 1.20006 0.99376 1.02176 0.90374 1.20509 1.01125 1.01301 0.88497 1.22946 1.05610 1.08919 0.99215 1.83848 1.37094 1.47157 0.92478 1.25708 0.99607 1.01195 1.04052 1.19222 1.04707 1.05125 0.87368 1.18868 0.99462 1.01268 0.86019 1.42716 1.31032 1.37344 1.03521 0.72339 1.22427 1.03327 0.99842 0.78235 1.23161 0.95679 0.84346 1.00206 1.88014 1.79390 1.43082 1.17504 0.94026 0.93381 0.94020 0.92950 0.93151 0.87551 0.87295 0.82587 0.77672 0.81799 0.88336 0.87366 0.93731 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.87 11.39 21.65 0.25 -55.62 16 2 C -0.06 -3.25 5.50 84.86 0.47 -2.79 16 3 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.24 -13.47 10.70 84.03 0.90 -12.57 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.63 -32.18 3.70 -728.95 -2.70 -34.88 16 10 C 0.10 4.17 8.08 86.30 0.70 4.87 16 11 C 0.08 2.88 1.21 -10.48 -0.01 2.86 16 12 C 0.18 8.05 6.90 86.31 0.60 8.64 16 13 C 0.08 2.09 4.70 86.18 0.41 2.50 16 14 N -0.60 -15.56 3.03 -822.78 -2.49 -18.05 16 15 C 0.59 16.86 7.63 86.38 0.66 17.52 16 16 O -0.55 -18.38 16.44 -4.48 -0.07 -18.45 16 17 C -0.01 -0.14 6.38 40.15 0.26 0.11 16 18 C -0.08 -2.20 10.71 22.68 0.24 -1.96 16 19 C -0.25 -6.01 7.26 22.86 0.17 -5.85 16 20 S 0.14 2.48 23.31 -56.49 -1.32 1.17 16 21 C -0.17 -2.49 11.13 66.64 0.74 -1.75 16 22 C -0.13 -2.30 10.16 21.49 0.22 -2.08 16 23 C 0.06 1.44 7.67 38.40 0.29 1.73 16 24 N -0.54 -12.09 4.90 -177.14 -0.87 -12.96 16 25 H 0.43 7.97 6.28 -92.71 -0.58 7.39 16 26 C 0.08 1.93 6.59 86.34 0.57 2.50 16 27 C 0.04 1.15 6.88 72.06 0.50 1.65 16 28 O -0.36 -13.22 10.52 -148.98 -1.57 -14.78 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.05 1.89 7.94 -2.39 -0.02 1.87 16 31 H 0.04 1.73 7.28 -2.38 -0.02 1.72 16 32 H 0.05 2.72 7.17 -2.39 -0.02 2.70 16 33 H 0.05 2.14 8.09 -2.39 -0.02 2.12 16 34 H 0.11 2.61 3.95 -2.39 -0.01 2.60 16 35 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 36 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 39 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.11 2.44 7.06 -2.39 -0.02 2.42 16 41 H 0.04 1.29 7.19 -2.39 -0.02 1.28 16 42 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -73.50 355.38 0.46 -73.05 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.50 Total: 17.51 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 6.70 Total: 15.40 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -5.81 Total: -121.51 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.64 Total: -33.23 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.32 Total: 1.17 kcal Total: -73.50 0.46 -73.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053496172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.049 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds