Wall clock time and date at job start Wed Apr 1 2020 04:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99607 * 2 1 4 4 H 1.48499 * 109.47197 * 274.98016 * 3 2 1 5 5 H 1.48500 * 109.47409 * 34.97850 * 3 2 1 6 6 H 1.48502 * 109.47114 * 154.98438 * 3 2 1 7 7 C 1.38807 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00255 * 174.88381 * 7 2 1 9 9 N 1.36939 * 119.99918 * 354.88410 * 7 2 1 10 10 C 1.47678 * 134.45665 * 187.12385 * 9 7 2 11 11 C 1.53442 * 85.97635 * 204.25927 * 10 9 7 12 12 C 1.47669 * 134.45699 * 7.07718 * 9 7 2 13 13 C 1.52450 * 113.60343 * 222.53152 * 11 10 9 14 14 N 1.47343 * 108.28152 * 180.20745 * 13 11 10 15 15 C 1.34786 * 121.05168 * 228.31997 * 14 13 11 16 16 O 1.21726 * 119.99777 * 183.97490 * 15 14 13 17 17 C 1.46411 * 119.99985 * 3.98071 * 15 14 13 18 18 C 1.35773 * 124.95971 * 139.21723 * 17 15 14 19 19 C 1.38869 * 115.18910 * 180.26080 * 18 17 15 20 20 N 1.39742 * 139.91807 * 180.02562 * 19 18 17 21 21 H 0.97005 * 125.63084 * 359.97438 * 20 19 18 22 22 C 1.36212 * 108.73497 * 179.97438 * 20 19 18 23 23 C 1.34510 * 109.29781 * 0.02562 * 22 20 19 24 24 C 1.38248 * 113.39199 * 0.02562 * 19 18 17 25 25 S 1.75625 * 124.95887 * 319.52162 * 17 15 14 26 26 C 1.47118 * 117.89432 * 48.05695 * 14 13 11 27 27 C 1.53227 * 108.72397 * 308.04151 * 26 14 13 28 28 O 1.42491 * 113.80636 * 91.24358 * 11 10 9 29 29 H 0.97000 * 120.00411 * 0.02562 * 1 2 3 30 30 H 1.08996 * 113.79083 * 89.99198 * 10 9 7 31 31 H 1.08999 * 113.89491 * 318.53869 * 10 9 7 32 32 H 1.08998 * 113.79490 * 41.47715 * 12 9 7 33 33 H 1.09001 * 113.79177 * 270.00721 * 12 9 7 34 34 H 1.09003 * 109.68955 * 60.46552 * 13 11 10 35 35 H 1.08997 * 109.57420 * 299.88147 * 13 11 10 36 36 H 1.08001 * 122.40819 * 0.24654 * 18 17 15 37 37 H 1.08001 * 125.34889 * 180.02562 * 22 20 19 38 38 H 1.08005 * 126.07617 * 179.97438 * 23 22 20 39 39 H 1.08997 * 109.59881 * 67.81166 * 26 14 13 40 40 H 1.08995 * 109.59956 * 188.27321 * 26 14 13 41 41 H 1.08999 * 109.49467 * 174.08923 * 27 26 14 42 42 H 1.08996 * 109.49177 * 294.13846 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2040 -0.0829 9 7 1.3298 -2.3856 0.1068 10 6 1.7299 -3.7976 0.2709 11 6 0.3773 -4.1423 -0.3665 12 6 -0.0983 -2.7613 0.1041 13 6 -0.3446 -5.2963 0.3201 14 7 -1.6175 -5.5297 -0.3844 15 6 -2.7754 -5.6527 0.2945 16 8 -3.8042 -5.9171 -0.2999 17 6 -2.7957 -5.4684 1.7468 18 6 -3.7647 -4.8111 2.4342 19 6 -3.5778 -4.7523 3.8090 20 7 -4.2007 -4.2440 4.9519 21 1 -5.0349 -3.7492 4.9681 22 6 -3.4431 -4.5581 6.0394 23 6 -2.3585 -5.2470 5.6416 24 6 -2.4225 -5.3820 4.2332 25 16 -1.5661 -6.0584 2.8534 26 6 -1.5855 -5.6182 -1.8525 27 6 -0.8575 -4.3877 -2.4038 28 8 0.4278 -4.2800 -1.7838 29 1 -0.4851 0.8400 -0.0004 30 1 1.8187 -4.1115 1.3109 31 1 2.5882 -4.0867 -0.3356 32 1 -0.6927 -2.2252 -0.6357 33 1 -0.5534 -2.7669 1.0946 34 1 -0.5415 -5.0391 1.3609 35 1 0.2726 -6.1934 0.2721 36 1 -4.6194 -4.3659 1.9467 37 1 -3.6766 -4.2952 7.0606 38 1 -1.5775 -5.6291 6.2823 39 1 -1.0549 -6.5218 -2.1528 40 1 -2.6041 -5.6441 -2.2396 41 1 -0.7338 -4.4909 -3.4818 42 1 -1.4416 -3.4930 -2.1887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053519148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:01 Heat of formation + Delta-G solvation = 77.527033 kcal Electronic energy + Delta-G solvation = -28704.782678 eV Core-core repulsion = 24780.384404 eV Total energy + Delta-G solvation = -3924.398274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23776 -40.37719 -38.74750 -36.11670 -35.08057 -34.53364 -32.25809 -31.01961 -30.27668 -28.63343 -27.51235 -26.00972 -25.12131 -24.33053 -22.86992 -22.01323 -21.20800 -20.64929 -19.11665 -18.65897 -18.45671 -16.98199 -16.83260 -16.31345 -15.65565 -15.50259 -15.26510 -14.92770 -14.62852 -14.56548 -14.34499 -14.02695 -13.82921 -13.57577 -13.33913 -13.24273 -12.93326 -12.48989 -12.35643 -12.25266 -11.99401 -11.45996 -11.29627 -11.14229 -10.97449 -10.85564 -10.79308 -10.61125 -10.28428 -10.06224 -9.77832 -9.67616 -9.56700 -9.26374 -8.79443 -8.30738 -8.08962 -7.63070 -6.86250 -5.76095 -3.07289 0.59951 1.37691 1.92699 2.41305 2.58859 2.70890 3.06976 3.22747 3.40460 3.45494 3.47571 4.08076 4.45447 4.48084 4.81219 4.88656 4.97082 5.09876 5.12395 5.18287 5.25046 5.37375 5.39394 5.46975 5.57573 5.67630 5.72682 5.75482 5.86424 5.93365 5.96612 6.11523 6.31519 6.42491 6.45740 6.50478 6.51351 6.66062 6.99385 7.17716 7.30050 7.35916 7.51768 7.81797 7.98096 8.12032 9.04996 9.71886 10.58935 11.41593 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009751 B = 0.004290 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.844045 B = 6525.457793 C = 8245.578589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.601 5.601 10 C 0.136 3.864 11 C 0.051 3.949 12 C 0.155 3.845 13 C 0.076 3.924 14 N -0.600 5.600 15 C 0.598 3.402 16 O -0.536 6.536 17 C -0.233 4.233 18 C -0.034 4.034 19 C 0.027 3.973 20 N -0.557 5.557 21 H 0.419 0.581 22 C 0.055 3.945 23 C -0.170 4.170 24 C -0.197 4.197 25 S 0.182 5.818 26 C 0.081 3.919 27 C 0.047 3.953 28 O -0.341 6.341 29 H 0.253 0.747 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.177 0.823 38 H 0.146 0.854 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 -13.547 8.509 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.009 3.991 11 C 0.009 3.991 12 C 0.029 3.971 13 C -0.049 4.049 14 N -0.333 5.333 15 C 0.386 3.614 16 O -0.414 6.414 17 C -0.353 4.353 18 C -0.069 4.069 19 C -0.086 4.086 20 N -0.158 5.158 21 H 0.256 0.744 22 C -0.078 4.078 23 C -0.200 4.200 24 C -0.319 4.319 25 S 0.446 5.554 26 C -0.041 4.041 27 C -0.031 4.031 28 O -0.259 6.259 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.163 0.837 37 H 0.194 0.806 38 H 0.164 0.836 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.480 -14.075 7.860 17.375 hybrid contribution -1.494 2.130 0.544 2.658 sum -7.975 -11.945 8.405 16.641 Atomic orbital electron populations 1.69837 1.05088 1.25283 1.56523 1.24798 0.95630 0.97490 1.02378 0.86138 0.78739 0.83627 0.77518 1.21620 1.21720 1.20539 1.18987 0.90765 0.81780 1.43083 0.90053 1.45723 1.01862 1.00658 1.84482 1.22510 0.93387 0.86527 0.96638 1.23591 0.99176 0.94362 0.81973 1.22604 0.88603 0.87737 0.98110 1.22814 0.84142 0.99775 0.98190 1.47977 1.07206 1.70769 1.07362 1.16852 0.83197 0.76632 0.84744 1.90806 1.32290 1.49003 1.69331 1.23547 1.01880 1.12618 0.97245 1.19100 0.99218 0.99296 0.89303 1.17931 0.95980 1.06030 0.88696 1.41887 1.22250 1.47365 1.04254 0.74360 1.21843 0.92824 1.01361 0.91820 1.20116 1.00976 1.07817 0.91058 1.23405 1.00409 1.08801 0.99281 1.83876 1.21670 1.57800 0.92102 1.22336 1.03137 0.99552 0.79061 1.22903 0.85916 0.96539 0.97696 1.87930 1.26504 1.93395 1.18074 0.93731 0.93134 0.92513 0.91073 0.94845 0.87684 0.90512 0.83704 0.80606 0.83583 0.90598 0.88215 0.87920 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.63 11.53 55.49 0.64 -26.99 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.33 29.56 -169.99 -5.02 17.30 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.19 10.69 -15.06 -0.16 -6.35 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.57 3.70 -180.33 -0.67 -16.23 16 10 C 0.14 2.77 8.33 -3.18 -0.03 2.74 16 11 C 0.05 0.98 1.21 -90.53 -0.11 0.87 16 12 C 0.16 3.71 6.54 -3.17 -0.02 3.69 16 13 C 0.08 1.19 4.99 -3.86 -0.02 1.17 16 14 N -0.60 -9.56 3.03 -174.34 -0.53 -10.09 16 15 C 0.60 10.08 7.54 -12.97 -0.10 9.99 16 16 O -0.54 -10.10 16.53 5.17 0.09 -10.02 16 17 C -0.23 -3.59 5.57 -37.18 -0.21 -3.79 16 18 C -0.03 -0.48 10.07 -40.23 -0.40 -0.89 16 19 C 0.03 0.36 7.67 -84.01 -0.64 -0.28 16 20 N -0.56 -5.42 6.21 -10.90 -0.07 -5.49 16 21 H 0.42 2.76 8.96 -40.82 -0.37 2.40 16 22 C 0.06 0.48 11.85 -16.92 -0.20 0.28 16 23 C -0.17 -1.84 10.85 -39.61 -0.43 -2.27 16 24 C -0.20 -2.65 7.31 -38.29 -0.28 -2.93 16 25 S 0.18 2.43 19.73 -107.50 -2.12 0.31 16 26 C 0.08 1.16 6.59 -3.59 -0.02 1.14 16 27 C 0.05 0.75 6.88 37.27 0.26 1.01 16 28 O -0.34 -6.63 10.52 -35.23 -0.37 -7.00 16 29 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.92 6.54 -51.93 -0.34 1.58 16 33 H 0.03 0.83 7.92 -51.93 -0.41 0.42 16 34 H 0.11 1.66 3.85 -28.32 -0.11 1.55 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.39 7.09 -51.93 -0.37 1.03 16 41 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.10 7.20 -51.93 -0.37 0.72 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -35.90 356.24 -10.04 -45.95 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.89 Total: 2.80 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.46 Total: 4.09 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.62 Total: -58.80 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.29 Total: -17.01 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.12 Total: 0.31 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.90 -10.04 -45.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053519148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.474 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds