Wall clock time and date at job start Wed Apr 1 2020 04:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48497 * 109.47294 * 274.98621 * 3 2 1 5 5 H 1.48497 * 109.47258 * 34.98474 * 3 2 1 6 6 H 1.48503 * 109.47246 * 154.98191 * 3 2 1 7 7 C 1.38813 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00533 * 185.09432 * 7 2 1 9 9 N 1.36940 * 119.99617 * 5.09295 * 7 2 1 10 10 C 1.47787 * 134.39961 * 173.50235 * 9 7 2 11 11 C 1.52885 * 85.78471 * 156.12749 * 10 9 7 12 12 C 1.47783 * 134.40403 * 353.51063 * 9 7 2 13 13 C 1.53467 * 115.59566 * 140.25415 * 11 10 9 14 14 C 1.54735 * 103.71864 * 152.76725 * 13 11 10 15 15 H 1.08998 * 110.51002 * 119.54992 * 14 13 11 16 16 N 1.46508 * 110.50531 * 242.10995 * 14 13 11 17 17 C 1.34771 * 120.00041 * 204.72240 * 16 14 13 18 18 O 1.21735 * 119.99784 * 0.28424 * 17 16 14 19 19 C 1.46450 * 120.00149 * 180.27537 * 17 16 14 20 20 C 1.37467 * 125.80311 * 179.69498 * 19 17 16 21 21 C 1.40668 * 107.55159 * 179.88642 * 20 19 17 22 22 S 1.76020 * 142.39601 * 180.02562 * 21 20 19 23 23 C 1.75593 * 91.30997 * 180.33246 * 22 21 20 24 24 C 1.32766 * 110.47435 * 359.97438 * 23 22 21 25 25 C 1.38247 * 108.03333 * 0.37822 * 21 20 19 26 26 N 1.37918 * 125.80789 * 0.02562 * 19 17 16 27 27 H 0.97004 * 125.68137 * 359.95550 * 26 19 17 28 28 C 1.54543 * 104.07728 * 0.75886 * 14 13 11 29 29 O 1.43245 * 115.85782 * 265.50658 * 11 10 9 30 30 H 0.97007 * 119.99983 * 0.02562 * 1 2 3 31 31 H 1.09004 * 113.82196 * 41.91518 * 10 9 7 32 32 H 1.08993 * 113.93671 * 270.35603 * 10 9 7 33 33 H 1.08997 * 113.82452 * 89.65654 * 12 9 7 34 34 H 1.08995 * 113.82474 * 318.08107 * 12 9 7 35 35 H 1.09003 * 110.57468 * 34.20268 * 13 11 10 36 36 H 1.09004 * 110.70245 * 271.38712 * 13 11 10 37 37 H 0.97002 * 119.99783 * 25.00382 * 16 14 13 38 38 H 1.07996 * 126.23062 * 0.02562 * 20 19 17 39 39 H 1.07994 * 124.75934 * 179.97438 * 23 22 21 40 40 H 1.07998 * 122.16294 * 179.97438 * 24 23 22 41 41 H 1.09005 * 110.32481 * 95.25788 * 28 14 13 42 42 H 1.08996 * 110.33079 * 217.48023 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0870 -1.2041 0.0836 9 7 1.3295 -2.3857 -0.1042 10 6 1.7314 -3.7998 -0.2555 11 6 0.3727 -4.1345 0.3603 12 6 -0.1004 -2.7591 -0.1113 13 6 -0.3580 -5.3343 -0.2577 14 6 -1.2375 -5.8642 0.8998 15 1 -2.2922 -5.8233 0.6276 16 7 -0.8525 -7.2333 1.2516 17 6 -1.7444 -8.0538 1.8412 18 8 -2.8716 -7.6589 2.0766 19 6 -1.3577 -9.4204 2.1984 20 6 -2.1655 -10.3520 2.8060 21 6 -1.4104 -11.5278 2.9669 22 16 -1.5064 -13.1731 3.5850 23 6 0.1631 -13.4818 3.1368 24 6 0.6993 -12.4057 2.5736 25 6 -0.1446 -11.2960 2.4617 26 7 -0.1191 -9.9895 1.9882 27 1 0.6427 -9.5512 1.5778 28 6 -0.9394 -4.9001 2.0702 29 8 0.3639 -4.3458 1.7770 30 1 -0.4850 0.8401 -0.0004 31 1 2.5793 -4.0856 0.3671 32 1 1.8363 -4.1213 -1.2917 33 1 -0.5491 -2.7647 -1.1046 34 1 -0.6990 -2.2232 0.6252 35 1 0.3553 -6.0946 -0.5761 36 1 -0.9783 -5.0175 -1.0962 37 1 0.0457 -7.5479 1.0639 38 1 -3.1937 -10.2082 3.1036 39 1 0.6810 -14.4159 3.2968 40 1 1.7216 -12.3879 2.2258 41 1 -1.6878 -4.1084 2.1086 42 1 -0.9154 -5.4457 3.0135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053973428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:07 Heat of formation + Delta-G solvation = 61.138606 kcal Electronic energy + Delta-G solvation = -27109.331209 eV Core-core repulsion = 23184.222280 eV Total energy + Delta-G solvation = -3925.108929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -41.70205 -40.28908 -39.03688 -36.24033 -35.64788 -34.49553 -32.12942 -31.38451 -30.71348 -28.72980 -27.86450 -25.93805 -24.97496 -24.07930 -23.11108 -22.00684 -21.15661 -20.66144 -20.20410 -19.07247 -19.01341 -16.89170 -16.74948 -16.59437 -15.81738 -15.63692 -15.42694 -15.17365 -14.97941 -14.50873 -14.44944 -14.15679 -14.02443 -13.89418 -13.47979 -13.14450 -13.04143 -12.78484 -12.23519 -12.03648 -11.90448 -11.64519 -11.54334 -11.31840 -11.19549 -11.14255 -10.89438 -10.65764 -10.43774 -10.23691 -10.09944 -9.82161 -9.57911 -9.42815 -8.86704 -8.81149 -8.44368 -8.03380 -6.89877 -5.78692 -3.09937 0.38942 1.17962 1.60032 1.71504 2.38447 2.44768 2.85732 3.05093 3.39088 3.43901 3.46438 4.18108 4.36196 4.41513 4.45281 4.59133 4.63332 4.93953 4.97549 5.09080 5.10852 5.18616 5.25853 5.37555 5.41058 5.55555 5.55731 5.62124 5.73748 5.88680 5.93450 5.96580 6.08468 6.21522 6.28234 6.32925 6.42380 6.54530 6.86565 6.91537 7.15549 7.20510 7.44894 7.62231 7.85757 7.96025 9.02859 9.69301 10.56155 11.39201 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.001899 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.718807 B =14744.787519 C =15237.413761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.130 3.870 11 C 0.054 3.946 12 C 0.155 3.845 13 C -0.145 4.145 14 C 0.112 3.888 15 H 0.108 0.892 16 N -0.714 5.714 17 C 0.586 3.414 18 O -0.520 6.520 19 C 0.009 3.991 20 C -0.070 4.070 21 C -0.220 4.220 22 S 0.132 5.868 23 C -0.188 4.188 24 C -0.115 4.115 25 C 0.067 3.933 26 N -0.541 5.541 27 H 0.420 0.580 28 C 0.038 3.962 29 O -0.337 6.337 30 H 0.254 0.746 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.396 0.604 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.142 0.858 41 H 0.073 0.927 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.570 -28.274 3.652 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.331 5.331 10 C 0.004 3.996 11 C 0.013 3.987 12 C 0.029 3.971 13 C -0.185 4.185 14 C 0.008 3.992 15 H 0.126 0.874 16 N -0.365 5.365 17 C 0.372 3.628 18 O -0.396 6.396 19 C -0.105 4.105 20 C -0.101 4.101 21 C -0.340 4.340 22 S 0.391 5.609 23 C -0.324 4.324 24 C -0.149 4.149 25 C -0.052 4.052 26 N -0.144 5.144 27 H 0.258 0.742 28 C -0.041 4.041 29 O -0.255 6.255 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.230 0.770 38 H 0.175 0.825 39 H 0.190 0.810 40 H 0.159 0.841 41 H 0.091 0.909 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.174 -28.295 4.601 28.842 hybrid contribution 2.321 1.783 -1.210 3.167 sum -0.853 -26.512 3.391 26.742 Atomic orbital electron populations 1.69825 1.05068 1.25408 1.56339 1.24814 0.95700 0.97562 1.02309 0.86109 0.78759 0.83524 0.77459 1.21631 1.21675 1.20539 1.18992 0.90735 0.81874 1.43333 0.90166 1.45825 1.02003 1.00522 1.84721 1.22500 0.93833 0.86668 0.96622 1.23834 0.98759 0.94521 0.81622 1.22549 0.88631 0.87702 0.98177 1.23082 0.98898 0.98693 0.97782 1.22539 1.01057 0.80128 0.95474 0.87401 1.46019 1.15037 1.13560 1.61874 1.16962 0.85172 0.82770 0.77865 1.90896 1.19616 1.75258 1.53809 1.20339 0.85748 0.94737 1.09696 1.20432 0.99571 0.88815 1.01263 1.22712 0.98312 1.00175 1.12850 1.83975 1.09589 1.03618 1.63694 1.25255 0.98593 1.02563 1.05991 1.18911 1.00545 0.90464 1.04944 1.18357 0.95385 0.86776 1.04684 1.41966 1.12030 1.09753 1.50637 0.74195 1.23820 0.87226 0.95405 0.97623 1.89019 1.31516 1.83169 1.21842 0.93609 0.93102 0.93565 0.94439 0.90735 0.90399 0.88959 0.76960 0.82480 0.80979 0.84052 0.90893 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.48 11.52 55.49 0.64 -26.84 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.22 -6.30 10.69 -15.06 -0.16 -6.47 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.60 3.70 -183.57 -0.68 -16.28 16 10 C 0.13 2.59 8.47 -3.40 -0.03 2.56 16 11 C 0.05 0.98 1.28 -90.65 -0.12 0.87 16 12 C 0.16 3.59 6.91 -3.40 -0.02 3.56 16 13 C -0.15 -1.91 6.24 -25.58 -0.16 -2.07 16 14 C 0.11 1.44 3.49 -66.20 -0.23 1.21 16 15 H 0.11 1.41 7.56 -51.93 -0.39 1.02 16 16 N -0.71 -7.59 5.08 -53.51 -0.27 -7.86 16 17 C 0.59 7.12 7.78 -12.96 -0.10 7.02 16 18 O -0.52 -8.05 16.51 5.16 0.09 -7.96 16 19 C 0.01 0.10 7.01 -82.10 -0.58 -0.48 16 20 C -0.07 -0.76 10.60 -38.95 -0.41 -1.18 16 21 C -0.22 -2.21 7.26 -38.66 -0.28 -2.49 16 22 S 0.13 1.01 23.31 -107.50 -2.51 -1.50 16 23 C -0.19 -1.15 11.13 28.86 0.32 -0.83 16 24 C -0.12 -0.80 10.16 -40.85 -0.42 -1.21 16 25 C 0.07 0.60 7.67 -84.00 -0.64 -0.04 16 26 N -0.54 -4.47 6.14 -7.34 -0.05 -4.52 16 27 H 0.42 2.28 8.14 -40.82 -0.33 1.94 16 28 C 0.04 0.58 7.37 37.97 0.28 0.86 16 29 O -0.34 -6.44 11.44 -35.23 -0.40 -6.84 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.86 7.96 -51.93 -0.41 0.45 16 34 H 0.07 1.95 7.39 -51.93 -0.38 1.57 16 35 H 0.08 0.84 7.69 -51.93 -0.40 0.45 16 36 H 0.09 1.16 7.84 -51.93 -0.41 0.75 16 37 H 0.40 3.22 7.47 -40.82 -0.30 2.92 16 38 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -35.15 366.99 -10.45 -45.60 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.13 Total: 2.35 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.64 Total: 1.01 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.36 Total: -55.49 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.32 Total: -14.81 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.15 -10.45 -45.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053973428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.738 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds