Wall clock time and date at job start Wed Apr 1 2020 04:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48497 * 109.47294 * 274.98621 * 3 2 1 5 5 H 1.48497 * 109.47258 * 34.98474 * 3 2 1 6 6 H 1.48503 * 109.47246 * 154.98191 * 3 2 1 7 7 C 1.38813 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00533 * 185.09432 * 7 2 1 9 9 N 1.36940 * 119.99617 * 5.09295 * 7 2 1 10 10 C 1.47787 * 134.39961 * 173.50235 * 9 7 2 11 11 C 1.52885 * 85.78471 * 156.12749 * 10 9 7 12 12 C 1.47783 * 134.40403 * 353.51063 * 9 7 2 13 13 C 1.53467 * 115.59566 * 140.25415 * 11 10 9 14 14 C 1.54735 * 103.71864 * 152.76725 * 13 11 10 15 15 H 1.08998 * 110.51002 * 119.54992 * 14 13 11 16 16 N 1.46508 * 110.50531 * 242.10995 * 14 13 11 17 17 C 1.34771 * 120.00041 * 204.72240 * 16 14 13 18 18 O 1.21735 * 119.99784 * 0.28424 * 17 16 14 19 19 C 1.46450 * 120.00149 * 180.27537 * 17 16 14 20 20 C 1.37467 * 125.80311 * 179.69498 * 19 17 16 21 21 C 1.40668 * 107.55159 * 179.88642 * 20 19 17 22 22 S 1.76020 * 142.39601 * 180.02562 * 21 20 19 23 23 C 1.75593 * 91.30997 * 180.33246 * 22 21 20 24 24 C 1.32766 * 110.47435 * 359.97438 * 23 22 21 25 25 C 1.38247 * 108.03333 * 0.37822 * 21 20 19 26 26 N 1.37918 * 125.80789 * 0.02562 * 19 17 16 27 27 H 0.97004 * 125.68137 * 359.95550 * 26 19 17 28 28 C 1.54543 * 104.07728 * 0.75886 * 14 13 11 29 29 O 1.43245 * 115.85782 * 265.50658 * 11 10 9 30 30 H 0.97007 * 119.99983 * 0.02562 * 1 2 3 31 31 H 1.09004 * 113.82196 * 41.91518 * 10 9 7 32 32 H 1.08993 * 113.93671 * 270.35603 * 10 9 7 33 33 H 1.08997 * 113.82452 * 89.65654 * 12 9 7 34 34 H 1.08995 * 113.82474 * 318.08107 * 12 9 7 35 35 H 1.09003 * 110.57468 * 34.20268 * 13 11 10 36 36 H 1.09004 * 110.70245 * 271.38712 * 13 11 10 37 37 H 0.97002 * 119.99783 * 25.00382 * 16 14 13 38 38 H 1.07996 * 126.23062 * 0.02562 * 20 19 17 39 39 H 1.07994 * 124.75934 * 179.97438 * 23 22 21 40 40 H 1.07998 * 122.16294 * 179.97438 * 24 23 22 41 41 H 1.09005 * 110.32481 * 95.25788 * 28 14 13 42 42 H 1.08996 * 110.33079 * 217.48023 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0870 -1.2041 0.0836 9 7 1.3295 -2.3857 -0.1042 10 6 1.7314 -3.7998 -0.2555 11 6 0.3727 -4.1345 0.3603 12 6 -0.1004 -2.7591 -0.1113 13 6 -0.3580 -5.3343 -0.2577 14 6 -1.2375 -5.8642 0.8998 15 1 -2.2922 -5.8233 0.6276 16 7 -0.8525 -7.2333 1.2516 17 6 -1.7444 -8.0538 1.8412 18 8 -2.8716 -7.6589 2.0766 19 6 -1.3577 -9.4204 2.1984 20 6 -2.1655 -10.3520 2.8060 21 6 -1.4104 -11.5278 2.9669 22 16 -1.5064 -13.1731 3.5850 23 6 0.1631 -13.4818 3.1368 24 6 0.6993 -12.4057 2.5736 25 6 -0.1446 -11.2960 2.4617 26 7 -0.1191 -9.9895 1.9882 27 1 0.6427 -9.5512 1.5778 28 6 -0.9394 -4.9001 2.0702 29 8 0.3639 -4.3458 1.7770 30 1 -0.4850 0.8401 -0.0004 31 1 2.5793 -4.0856 0.3671 32 1 1.8363 -4.1213 -1.2917 33 1 -0.5491 -2.7647 -1.1046 34 1 -0.6990 -2.2232 0.6252 35 1 0.3553 -6.0946 -0.5761 36 1 -0.9783 -5.0175 -1.0962 37 1 0.0457 -7.5479 1.0639 38 1 -3.1937 -10.2082 3.1036 39 1 0.6810 -14.4159 3.2968 40 1 1.7216 -12.3879 2.2258 41 1 -1.6878 -4.1084 2.1086 42 1 -0.9154 -5.4457 3.0135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053973428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:06 Heat of formation + Delta-G solvation = 35.678159 kcal Electronic energy + Delta-G solvation = -27110.435257 eV Core-core repulsion = 23184.222280 eV Total energy + Delta-G solvation = -3926.212977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.44260 -41.57072 -40.16430 -37.78306 -36.25288 -35.66200 -34.15710 -32.21960 -31.77461 -30.07602 -28.95827 -27.60536 -26.65979 -24.89881 -24.01466 -23.53863 -22.19483 -21.46906 -21.01572 -20.60114 -19.74759 -18.74428 -17.71874 -17.63084 -17.08868 -16.77814 -16.48112 -16.38790 -16.15509 -15.96338 -15.26559 -15.22299 -15.12283 -15.00388 -14.60775 -14.58249 -14.46640 -13.85592 -13.36749 -13.22313 -13.00806 -12.88847 -12.81878 -12.75404 -12.63085 -12.51444 -12.31268 -12.07128 -11.74057 -11.70925 -11.34385 -11.31194 -10.94063 -10.77455 -10.71981 -10.15815 -9.11494 -8.93013 -8.65041 -7.93239 -5.25077 -0.26548 0.59071 0.83683 1.16941 1.43185 1.45277 1.54192 1.71024 1.78767 2.00588 2.16276 2.45439 2.81373 3.24465 3.38476 3.49693 3.63798 3.68990 3.80184 3.83423 4.00098 4.03672 4.26036 4.38841 4.52033 4.55758 4.65035 4.72101 4.73866 4.78527 4.85517 4.91070 4.92319 4.95141 5.09633 5.17218 5.21239 5.32277 5.41939 5.49671 5.55102 5.90505 6.07958 6.25138 6.42463 6.89758 6.95167 7.58752 8.53317 9.24444 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.001899 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.718807 B =14744.787519 C =15237.413761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.232 4.232 8 H 0.083 0.917 9 N -0.642 5.642 10 C 0.131 3.869 11 C 0.073 3.927 12 C 0.149 3.851 13 C -0.129 4.129 14 C 0.126 3.874 15 H 0.108 0.892 16 N -0.699 5.699 17 C 0.591 3.409 18 O -0.560 6.560 19 C -0.004 4.004 20 C -0.084 4.084 21 C -0.253 4.253 22 S 0.126 5.874 23 C -0.169 4.169 24 C -0.128 4.128 25 C 0.071 3.929 26 N -0.529 5.529 27 H 0.433 0.567 28 C 0.034 3.966 29 O -0.363 6.363 30 H 0.248 0.752 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.412 0.588 38 H 0.151 0.849 39 H 0.206 0.794 40 H 0.170 0.830 41 H 0.059 0.941 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -31.107 2.977 31.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.361 4.361 8 H 0.101 0.899 9 N -0.368 5.368 10 C 0.007 3.993 11 C 0.032 3.968 12 C 0.023 3.977 13 C -0.168 4.168 14 C 0.021 3.979 15 H 0.126 0.874 16 N -0.351 5.351 17 C 0.379 3.621 18 O -0.438 6.438 19 C -0.119 4.119 20 C -0.115 4.115 21 C -0.373 4.373 22 S 0.385 5.615 23 C -0.305 4.305 24 C -0.161 4.161 25 C -0.049 4.049 26 N -0.133 5.133 27 H 0.274 0.726 28 C -0.044 4.044 29 O -0.282 6.282 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.249 0.751 38 H 0.169 0.831 39 H 0.223 0.777 40 H 0.187 0.813 41 H 0.077 0.923 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.955 -31.166 3.905 31.424 hybrid contribution 1.677 2.516 -0.916 3.160 sum 0.722 -28.650 2.989 28.814 Atomic orbital electron populations 1.70019 1.06502 1.25583 1.58146 1.25673 0.96613 1.00992 1.03054 0.85059 0.77833 0.79106 0.77365 1.21134 1.22307 1.19181 1.19395 0.91227 0.83446 1.42022 0.89890 1.46251 1.03455 1.01996 1.85137 1.22740 0.94788 0.83320 0.98442 1.23425 0.97605 0.93974 0.81755 1.22524 0.87315 0.90658 0.97174 1.22989 0.99244 0.97045 0.97542 1.22261 1.01112 0.80514 0.94062 0.87430 1.45798 1.15631 1.12390 1.61281 1.17096 0.84632 0.83257 0.77140 1.90877 1.21324 1.76120 1.55493 1.19983 0.86868 0.94012 1.11013 1.20549 0.99720 0.89714 1.01534 1.22960 0.98965 1.01066 1.14290 1.84010 1.11381 1.02392 1.63735 1.25723 0.97297 1.03556 1.03951 1.19212 1.01664 0.89690 1.05525 1.18800 0.95401 0.87185 1.03548 1.41854 1.11659 1.09565 1.50206 0.72553 1.23921 0.85539 0.95677 0.99231 1.88991 1.33175 1.83528 1.22469 0.94318 0.92616 0.90340 0.94491 0.95053 0.86687 0.87765 0.75114 0.83085 0.77704 0.81307 0.92322 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 11.52 21.65 0.25 -58.75 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 3 Si 0.98 46.72 29.56 68.60 2.03 48.74 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.23 -13.35 10.69 84.03 0.90 -12.46 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.64 -33.30 3.70 -740.94 -2.74 -36.05 16 10 C 0.13 5.01 8.47 86.09 0.73 5.74 16 11 C 0.07 2.60 1.28 -10.65 -0.01 2.59 16 12 C 0.15 7.04 6.91 86.10 0.59 7.64 16 13 C -0.13 -3.03 6.24 31.34 0.20 -2.84 16 14 C 0.13 3.02 3.49 46.11 0.16 3.18 16 15 H 0.11 2.70 7.56 -2.39 -0.02 2.68 16 16 N -0.70 -13.38 5.08 -441.40 -2.24 -15.63 16 17 C 0.59 13.84 7.78 86.38 0.67 14.51 16 18 O -0.56 -17.43 16.51 -4.46 -0.07 -17.51 16 19 C 0.00 -0.08 7.01 40.14 0.28 0.20 16 20 C -0.08 -1.84 10.60 22.68 0.24 -1.59 16 21 C -0.25 -4.85 7.26 22.87 0.17 -4.68 16 22 S 0.13 1.74 23.31 -56.49 -1.32 0.42 16 23 C -0.17 -1.50 11.13 66.64 0.74 -0.76 16 24 C -0.13 -1.34 10.16 21.49 0.22 -1.12 16 25 C 0.07 1.13 7.67 38.40 0.29 1.42 16 26 N -0.53 -7.61 6.14 -177.14 -1.09 -8.70 16 27 H 0.43 3.41 8.14 -92.71 -0.75 2.66 16 28 C 0.03 1.05 7.37 72.51 0.53 1.58 16 29 O -0.36 -13.72 11.44 -148.98 -1.70 -15.43 16 30 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 31 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.04 1.73 7.96 -2.39 -0.02 1.71 16 34 H 0.03 1.73 7.39 -2.39 -0.02 1.71 16 35 H 0.11 1.92 7.69 -2.39 -0.02 1.90 16 36 H 0.10 2.31 7.84 -2.39 -0.02 2.29 16 37 H 0.41 5.34 7.47 -92.71 -0.69 4.65 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.21 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.09 2.74 8.06 -2.39 -0.02 2.72 16 Total: -1.00 -79.62 366.99 -1.07 -80.69 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.36 Total: 12.44 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.18 Total: 9.76 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -5.82 Total: -119.12 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -1.78 Total: -32.94 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.32 Total: 0.42 kcal Total: -79.62 -1.07 -80.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053973428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.371 kcal (2) G-P(sol) polarization free energy of solvation -79.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds