Wall clock time and date at job start Wed Apr 1 2020 04:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47284 * 270.00696 * 3 2 1 5 5 H 1.48502 * 109.46739 * 30.00259 * 3 2 1 6 6 H 1.48497 * 109.47147 * 150.00300 * 3 2 1 7 7 C 1.38811 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99653 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00498 * 359.97438 * 7 2 1 10 10 C 1.47812 * 134.38520 * 179.97438 * 9 7 2 11 11 C 1.52723 * 85.72465 * 156.23484 * 10 9 7 12 12 C 1.47816 * 134.38382 * 359.97438 * 9 7 2 13 13 C 1.53806 * 115.65720 * 140.36202 * 11 10 9 14 14 C 1.55024 * 101.90117 * 94.50359 * 13 11 10 15 15 H 1.09002 * 110.47126 * 261.00797 * 14 13 11 16 16 N 1.46495 * 110.58279 * 138.45388 * 14 13 11 17 17 C 1.34782 * 119.99866 * 158.63252 * 16 14 13 18 18 O 1.21728 * 120.00008 * 359.97438 * 17 16 14 19 19 C 1.46410 * 119.99936 * 180.02562 * 17 16 14 20 20 C 1.35773 * 124.95946 * 179.97438 * 19 17 16 21 21 C 1.38864 * 115.18836 * 179.97438 * 20 19 17 22 22 N 1.39748 * 139.91729 * 179.97438 * 21 20 19 23 23 H 0.96995 * 125.63412 * 0.02562 * 22 21 20 24 24 C 1.36214 * 108.73440 * 180.02562 * 22 21 20 25 25 C 1.34506 * 109.29872 * 0.02562 * 24 22 21 26 26 C 1.38242 * 113.39403 * 0.02562 * 21 20 19 27 27 S 1.75619 * 124.95948 * 359.68820 * 19 17 16 28 28 C 1.54180 * 104.27398 * 19.70095 * 14 13 11 29 29 O 1.43159 * 116.23666 * 264.67039 * 11 10 9 30 30 H 0.97005 * 119.99534 * 359.97438 * 1 2 3 31 31 H 1.09005 * 113.83278 * 42.03805 * 10 9 7 32 32 H 1.09001 * 113.94876 * 270.44734 * 10 9 7 33 33 H 1.08998 * 113.83197 * 89.56732 * 12 9 7 34 34 H 1.08997 * 113.82812 * 317.96939 * 12 9 7 35 35 H 1.09004 * 110.94527 * 336.35506 * 13 11 10 36 36 H 1.09001 * 110.94402 * 212.65348 * 13 11 10 37 37 H 0.96999 * 120.00220 * 338.62328 * 16 14 13 38 38 H 1.08007 * 122.40721 * 359.93831 * 20 19 17 39 39 H 1.08006 * 125.35039 * 180.02562 * 24 22 21 40 40 H 1.08001 * 126.07793 * 179.97438 * 25 24 22 41 41 H 1.09002 * 109.85413 * 121.22671 * 28 14 13 42 42 H 1.09001 * 109.85355 * 242.16764 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 1.7232 -3.8117 -0.0015 11 6 0.3507 -4.0775 0.6132 12 6 -0.1064 -2.7553 0.0004 13 6 -0.3753 -5.3339 0.1035 14 6 0.0304 -6.3898 1.1636 15 1 0.8529 -7.0031 0.7955 16 7 -1.1157 -7.2307 1.5178 17 6 -0.9161 -8.4458 2.0657 18 8 0.2165 -8.8447 2.2659 19 6 -2.0614 -9.2865 2.4192 20 6 -1.9772 -10.5229 2.9738 21 6 -3.1946 -11.1413 3.2270 22 7 -3.6992 -12.3346 3.7507 23 1 -3.1682 -13.0718 4.0905 24 6 -5.0599 -12.2916 3.7050 25 6 -5.4500 -11.1195 3.1729 26 6 -4.2858 -10.3748 2.8627 27 16 -3.7450 -8.8400 2.1942 28 6 0.4823 -5.5547 2.3783 29 8 0.3032 -4.1662 2.0413 30 1 -0.4850 0.8401 0.0004 31 1 2.5555 -4.0369 0.6655 32 1 1.8491 -4.2353 -0.9979 33 1 -0.5357 -2.8569 -0.9963 34 1 -0.7164 -2.1476 0.6687 35 1 -0.0159 -5.6172 -0.8859 36 1 -1.4549 -5.1841 0.0962 37 1 -2.0181 -6.9130 1.3581 38 1 -1.0313 -10.9922 3.2012 39 1 -5.7216 -13.0754 4.0430 40 1 -6.4696 -10.8025 3.0109 41 1 -0.1258 -5.8061 3.2473 42 1 1.5329 -5.7511 2.5924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053995370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:11 Heat of formation + Delta-G solvation = 63.669758 kcal Electronic energy + Delta-G solvation = -26886.997568 eV Core-core repulsion = 22961.998398 eV Total energy + Delta-G solvation = -3924.999170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.56922 -40.36845 -39.21108 -36.22865 -35.34636 -34.45381 -32.05358 -31.34710 -30.69480 -28.70769 -27.84810 -25.83954 -24.91238 -24.44283 -22.45418 -21.83965 -21.26186 -20.86692 -20.04696 -19.00503 -18.73489 -17.16604 -16.70991 -16.50469 -15.81732 -15.47078 -15.30206 -15.05896 -14.93725 -14.69700 -14.49571 -14.32306 -13.88120 -13.74131 -13.44621 -13.13680 -13.02613 -12.62828 -12.32802 -11.95167 -11.84329 -11.61997 -11.57768 -11.23043 -11.17073 -11.09566 -10.79065 -10.65839 -10.24679 -10.07123 -10.06322 -9.68249 -9.55580 -9.27511 -8.86666 -8.73808 -8.49392 -8.01523 -6.84042 -5.71144 -3.02590 0.21276 1.10696 1.64617 2.04608 2.25387 2.53915 3.00068 3.02325 3.43927 3.48515 3.50939 4.24941 4.40455 4.50149 4.51068 4.57064 4.66690 4.90527 5.06056 5.08161 5.08972 5.24936 5.37676 5.39459 5.43067 5.54544 5.62169 5.63649 5.79760 5.93693 6.00624 6.07619 6.09718 6.33288 6.35774 6.39740 6.56639 6.65408 6.95339 6.97579 7.22542 7.27851 7.53198 7.74870 7.96630 8.03353 9.09642 9.76095 10.62617 11.46570 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.032916 B = 0.001950 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.439768 B =14352.355853 C =14852.473499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.219 4.219 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.103 3.897 11 C 0.061 3.939 12 C 0.177 3.823 13 C -0.146 4.146 14 C 0.115 3.885 15 H 0.104 0.896 16 N -0.712 5.712 17 C 0.592 3.408 18 O -0.530 6.530 19 C -0.238 4.238 20 C -0.029 4.029 21 C 0.022 3.978 22 N -0.557 5.557 23 H 0.420 0.580 24 C 0.059 3.941 25 C -0.172 4.172 26 C -0.186 4.186 27 S 0.169 5.831 28 C 0.037 3.963 29 O -0.334 6.334 30 H 0.253 0.747 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.400 0.600 38 H 0.150 0.850 39 H 0.179 0.821 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 -27.737 5.868 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.023 4.023 11 C 0.019 3.981 12 C 0.052 3.948 13 C -0.185 4.185 14 C 0.010 3.990 15 H 0.122 0.878 16 N -0.364 5.364 17 C 0.378 3.622 18 O -0.408 6.408 19 C -0.359 4.359 20 C -0.065 4.065 21 C -0.092 4.092 22 N -0.158 5.158 23 H 0.258 0.742 24 C -0.075 4.075 25 C -0.202 4.202 26 C -0.308 4.308 27 S 0.432 5.568 28 C -0.041 4.041 29 O -0.251 6.251 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.236 0.764 38 H 0.167 0.833 39 H 0.196 0.804 40 H 0.166 0.834 41 H 0.099 0.901 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.156 -26.261 5.630 29.480 hybrid contribution 0.912 -0.851 0.497 1.343 sum -11.244 -27.112 6.127 29.984 Atomic orbital electron populations 1.69805 1.04992 1.25310 1.56825 1.24770 0.95705 0.97495 1.02544 0.86102 0.78645 0.83445 0.77470 1.21682 1.21634 1.20643 1.18996 0.90245 0.81844 1.43595 0.90229 1.45856 1.01984 0.99144 1.86113 1.22924 0.95143 0.87119 0.97134 1.23803 0.97179 0.95653 0.81421 1.22151 0.88792 0.87167 0.96696 1.23221 1.02105 0.94522 0.98649 1.22517 0.88923 0.91985 0.95538 0.87770 1.45967 1.10191 1.16742 1.63466 1.16847 0.87258 0.80758 0.77287 1.90847 1.22914 1.72973 1.54061 1.23716 0.97533 1.00220 1.14401 1.19230 0.96514 0.92955 0.97801 1.17988 0.93420 0.89330 1.08436 1.41913 1.06357 1.15081 1.52437 0.74217 1.21901 0.82748 0.99748 1.03065 1.20162 0.97017 0.94182 1.08792 1.23217 0.97924 0.99526 1.10137 1.83818 0.95836 1.13302 1.63825 1.23594 1.00916 0.82612 0.97021 1.88862 1.93117 1.22639 1.20524 0.93655 0.93290 0.93899 0.93961 0.89969 0.89175 0.89783 0.76425 0.83271 0.80412 0.83409 0.90141 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.86 11.40 55.49 0.63 -27.23 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 8 H 0.08 2.23 7.83 -52.48 -0.41 1.81 16 9 N -0.60 -16.02 3.71 -184.63 -0.68 -16.71 16 10 C 0.10 2.17 8.49 -3.47 -0.03 2.14 16 11 C 0.06 1.18 1.28 -90.67 -0.12 1.06 16 12 C 0.18 4.22 7.05 -3.46 -0.02 4.20 16 13 C -0.15 -2.08 6.21 -25.24 -0.16 -2.23 16 14 C 0.11 1.58 3.35 -66.25 -0.22 1.35 16 15 H 0.10 1.44 7.66 -51.93 -0.40 1.04 16 16 N -0.71 -8.60 5.04 -53.56 -0.27 -8.87 16 17 C 0.59 7.79 7.77 -12.97 -0.10 7.69 16 18 O -0.53 -8.52 16.48 5.16 0.09 -8.44 16 19 C -0.24 -2.67 6.38 -37.18 -0.24 -2.91 16 20 C -0.03 -0.30 9.88 -40.23 -0.40 -0.69 16 21 C 0.02 0.20 7.67 -84.02 -0.64 -0.45 16 22 N -0.56 -3.23 6.21 -10.90 -0.07 -3.30 16 23 H 0.42 1.16 8.96 -40.82 -0.37 0.79 16 24 C 0.06 0.29 11.85 -16.92 -0.20 0.09 16 25 C -0.17 -1.23 10.85 -39.61 -0.43 -1.65 16 26 C -0.19 -1.76 7.31 -38.29 -0.28 -2.04 16 27 S 0.17 1.59 22.29 -107.50 -2.40 -0.80 16 28 C 0.04 0.59 7.51 37.77 0.28 0.87 16 29 O -0.33 -6.80 11.35 -35.23 -0.40 -7.20 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.82 8.00 -51.93 -0.42 0.41 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 2.22 7.20 -51.93 -0.37 1.84 16 35 H 0.09 1.15 7.95 -51.93 -0.41 0.74 16 36 H 0.08 1.08 7.75 -51.93 -0.40 0.68 16 37 H 0.40 4.11 7.42 -40.82 -0.30 3.81 16 38 H 0.15 1.41 8.00 -52.48 -0.42 0.99 16 39 H 0.18 0.17 8.06 -52.48 -0.42 -0.25 16 40 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -36.35 366.72 -10.57 -46.92 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.16 Total: 1.86 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.81 Total: 0.56 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.39 Total: -56.10 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.31 Total: -15.63 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.40 Total: -0.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.35 -10.57 -46.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053995370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.591 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds