Wall clock time and date at job start Wed Apr 1 2020 04:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47284 * 270.00696 * 3 2 1 5 5 H 1.48502 * 109.46739 * 30.00259 * 3 2 1 6 6 H 1.48497 * 109.47147 * 150.00300 * 3 2 1 7 7 C 1.38811 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99653 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00498 * 359.97438 * 7 2 1 10 10 C 1.47812 * 134.38520 * 179.97438 * 9 7 2 11 11 C 1.52723 * 85.72465 * 156.23484 * 10 9 7 12 12 C 1.47816 * 134.38382 * 359.97438 * 9 7 2 13 13 C 1.53806 * 115.65720 * 140.36202 * 11 10 9 14 14 C 1.55024 * 101.90117 * 94.50359 * 13 11 10 15 15 H 1.09002 * 110.47126 * 261.00797 * 14 13 11 16 16 N 1.46495 * 110.58279 * 138.45388 * 14 13 11 17 17 C 1.34782 * 119.99866 * 158.63252 * 16 14 13 18 18 O 1.21728 * 120.00008 * 359.97438 * 17 16 14 19 19 C 1.46410 * 119.99936 * 180.02562 * 17 16 14 20 20 C 1.35773 * 124.95946 * 179.97438 * 19 17 16 21 21 C 1.38864 * 115.18836 * 179.97438 * 20 19 17 22 22 N 1.39748 * 139.91729 * 179.97438 * 21 20 19 23 23 H 0.96995 * 125.63412 * 0.02562 * 22 21 20 24 24 C 1.36214 * 108.73440 * 180.02562 * 22 21 20 25 25 C 1.34506 * 109.29872 * 0.02562 * 24 22 21 26 26 C 1.38242 * 113.39403 * 0.02562 * 21 20 19 27 27 S 1.75619 * 124.95948 * 359.68820 * 19 17 16 28 28 C 1.54180 * 104.27398 * 19.70095 * 14 13 11 29 29 O 1.43159 * 116.23666 * 264.67039 * 11 10 9 30 30 H 0.97005 * 119.99534 * 359.97438 * 1 2 3 31 31 H 1.09005 * 113.83278 * 42.03805 * 10 9 7 32 32 H 1.09001 * 113.94876 * 270.44734 * 10 9 7 33 33 H 1.08998 * 113.83197 * 89.56732 * 12 9 7 34 34 H 1.08997 * 113.82812 * 317.96939 * 12 9 7 35 35 H 1.09004 * 110.94527 * 336.35506 * 13 11 10 36 36 H 1.09001 * 110.94402 * 212.65348 * 13 11 10 37 37 H 0.96999 * 120.00220 * 338.62328 * 16 14 13 38 38 H 1.08007 * 122.40721 * 359.93831 * 20 19 17 39 39 H 1.08006 * 125.35039 * 180.02562 * 24 22 21 40 40 H 1.08001 * 126.07793 * 179.97438 * 25 24 22 41 41 H 1.09002 * 109.85413 * 121.22671 * 28 14 13 42 42 H 1.09001 * 109.85355 * 242.16764 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 1.7232 -3.8117 -0.0015 11 6 0.3507 -4.0775 0.6132 12 6 -0.1064 -2.7553 0.0004 13 6 -0.3753 -5.3339 0.1035 14 6 0.0304 -6.3898 1.1636 15 1 0.8529 -7.0031 0.7955 16 7 -1.1157 -7.2307 1.5178 17 6 -0.9161 -8.4458 2.0657 18 8 0.2165 -8.8447 2.2659 19 6 -2.0614 -9.2865 2.4192 20 6 -1.9772 -10.5229 2.9738 21 6 -3.1946 -11.1413 3.2270 22 7 -3.6992 -12.3346 3.7507 23 1 -3.1682 -13.0718 4.0905 24 6 -5.0599 -12.2916 3.7050 25 6 -5.4500 -11.1195 3.1729 26 6 -4.2858 -10.3748 2.8627 27 16 -3.7450 -8.8400 2.1942 28 6 0.4823 -5.5547 2.3783 29 8 0.3032 -4.1662 2.0413 30 1 -0.4850 0.8401 0.0004 31 1 2.5555 -4.0369 0.6655 32 1 1.8491 -4.2353 -0.9979 33 1 -0.5357 -2.8569 -0.9963 34 1 -0.7164 -2.1476 0.6687 35 1 -0.0159 -5.6172 -0.8859 36 1 -1.4549 -5.1841 0.0962 37 1 -2.0181 -6.9130 1.3581 38 1 -1.0313 -10.9922 3.2012 39 1 -5.7216 -13.0754 4.0430 40 1 -6.4696 -10.8025 3.0109 41 1 -0.1258 -5.8061 3.2473 42 1 1.5329 -5.7511 2.5924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053995370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:09 Heat of formation + Delta-G solvation = 37.229164 kcal Electronic energy + Delta-G solvation = -26888.144118 eV Core-core repulsion = 22961.998398 eV Total energy + Delta-G solvation = -3926.145720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12642 -41.68185 -40.45260 -37.81033 -36.11319 -35.66408 -34.12902 -32.05170 -31.76102 -30.10673 -28.90292 -27.54916 -26.66031 -25.28272 -23.89919 -22.99046 -22.16253 -21.67006 -20.89802 -20.53927 -19.43025 -18.75345 -17.94931 -17.69146 -16.98643 -16.65566 -16.55053 -16.44983 -16.08984 -15.93408 -15.41292 -15.37120 -15.19294 -14.93131 -14.55463 -14.41552 -14.37796 -13.67124 -13.34054 -13.27640 -12.98473 -12.96724 -12.92345 -12.77941 -12.69312 -12.49751 -12.29175 -11.95890 -11.87946 -11.62590 -11.34453 -11.24168 -10.93694 -10.67229 -10.59430 -10.17430 -9.14081 -8.92083 -8.61983 -7.89699 -5.22149 -0.52111 0.42281 0.95483 1.36041 1.44699 1.47652 1.56050 1.72785 1.83017 2.10616 2.25990 2.47640 2.82507 3.28703 3.35760 3.40710 3.67599 3.72214 3.88484 3.95424 4.06048 4.14998 4.17473 4.23491 4.53460 4.57511 4.65199 4.69974 4.75104 4.77719 4.89258 4.92955 4.97640 4.98421 5.05913 5.20014 5.25358 5.32967 5.51465 5.56015 5.79873 5.92891 6.16664 6.32665 6.61375 6.92413 6.98747 7.60766 8.54909 9.27686 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.032916 B = 0.001950 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.439768 B =14352.355853 C =14852.473499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.640 5.640 10 C 0.103 3.897 11 C 0.077 3.923 12 C 0.173 3.827 13 C -0.131 4.131 14 C 0.128 3.872 15 H 0.109 0.891 16 N -0.704 5.704 17 C 0.595 3.405 18 O -0.566 6.566 19 C -0.271 4.271 20 C -0.021 4.021 21 C -0.006 4.006 22 N -0.546 5.546 23 H 0.435 0.565 24 C 0.091 3.909 25 C -0.201 4.201 26 C -0.197 4.197 27 S 0.175 5.825 28 C 0.035 3.965 29 O -0.368 6.368 30 H 0.249 0.751 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.410 0.590 38 H 0.150 0.850 39 H 0.226 0.774 40 H 0.163 0.837 41 H 0.085 0.915 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.480 -30.482 5.990 33.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.367 5.367 10 C -0.022 4.022 11 C 0.036 3.964 12 C 0.048 3.952 13 C -0.170 4.170 14 C 0.023 3.977 15 H 0.127 0.873 16 N -0.356 5.356 17 C 0.383 3.617 18 O -0.447 6.447 19 C -0.391 4.391 20 C -0.057 4.057 21 C -0.119 4.119 22 N -0.149 5.149 23 H 0.276 0.724 24 C -0.045 4.045 25 C -0.230 4.230 26 C -0.321 4.321 27 S 0.438 5.562 28 C -0.043 4.043 29 O -0.287 6.287 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.247 0.753 38 H 0.168 0.832 39 H 0.242 0.758 40 H 0.181 0.819 41 H 0.104 0.896 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.233 -29.048 5.748 32.433 hybrid contribution 1.146 -0.183 0.564 1.290 sum -12.087 -29.231 6.312 32.255 Atomic orbital electron populations 1.69998 1.06380 1.25620 1.58225 1.25645 0.96676 1.00899 1.03025 0.85047 0.77543 0.78962 0.77585 1.20919 1.22006 1.19604 1.19386 0.90747 0.83426 1.42712 0.90116 1.46264 1.03442 1.00530 1.86443 1.23141 0.96111 0.84288 0.98615 1.23396 0.96072 0.95629 0.81289 1.22078 0.87388 0.89173 0.96579 1.23132 1.02623 0.91600 0.99601 1.22277 0.89591 0.91705 0.94134 0.87304 1.45828 1.10247 1.16334 1.63181 1.17068 0.87331 0.80787 0.76469 1.90818 1.24395 1.73771 1.55724 1.23499 0.97775 1.00791 1.16994 1.19352 0.97172 0.92662 0.96533 1.17987 0.92863 0.90919 1.10165 1.42049 1.07005 1.14453 1.51356 0.72437 1.22689 0.82512 0.99647 0.99621 1.20568 0.97245 0.94974 1.10222 1.23631 0.99196 0.99439 1.09785 1.83639 0.94626 1.13832 1.64126 1.23739 1.01274 0.80985 0.98297 1.88825 1.93242 1.25447 1.21155 0.94222 0.93398 0.90983 0.93292 0.94084 0.86715 0.88096 0.75281 0.83245 0.75794 0.81913 0.89643 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 11.40 21.65 0.25 -59.15 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.98 47.50 29.55 68.60 2.03 49.52 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.23 -13.82 10.70 84.03 0.90 -12.92 16 8 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.64 -34.45 3.71 -744.76 -2.76 -37.21 16 10 C 0.10 4.28 8.49 86.03 0.73 5.02 16 11 C 0.08 2.96 1.28 -10.64 -0.01 2.95 16 12 C 0.17 8.43 7.05 86.04 0.61 9.04 16 13 C -0.13 -3.48 6.21 31.56 0.20 -3.28 16 14 C 0.13 3.34 3.35 46.08 0.15 3.50 16 15 H 0.11 2.83 7.66 -2.39 -0.02 2.81 16 16 N -0.70 -16.33 5.04 -441.57 -2.23 -18.56 16 17 C 0.60 15.49 7.77 86.37 0.67 16.16 16 18 O -0.57 -18.24 16.48 -4.44 -0.07 -18.31 16 19 C -0.27 -6.00 6.38 23.83 0.15 -5.85 16 20 C -0.02 -0.41 9.88 21.85 0.22 -0.20 16 21 C -0.01 -0.11 7.67 38.03 0.29 0.18 16 22 N -0.55 -4.72 6.21 -188.39 -1.17 -5.89 16 23 H 0.44 1.05 8.96 -92.71 -0.83 0.22 16 24 C 0.09 0.53 11.85 83.16 0.99 1.51 16 25 C -0.20 -2.31 10.85 22.25 0.24 -2.07 16 26 C -0.20 -3.45 7.31 23.11 0.17 -3.28 16 27 S 0.17 3.18 22.29 -56.49 -1.26 1.92 16 28 C 0.03 1.10 7.51 72.38 0.54 1.65 16 29 O -0.37 -15.16 11.35 -148.98 -1.69 -16.85 16 30 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 31 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.07 2.60 8.00 -2.39 -0.02 2.58 16 33 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.04 2.32 7.20 -2.39 -0.02 2.30 16 35 H 0.11 2.56 7.95 -2.39 -0.02 2.54 16 36 H 0.10 2.39 7.75 -2.39 -0.02 2.37 16 37 H 0.41 7.96 7.42 -92.71 -0.69 7.27 16 38 H 0.15 2.83 8.00 -2.91 -0.02 2.80 16 39 H 0.23 -0.88 8.06 -2.91 -0.02 -0.90 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.09 2.59 7.93 -2.39 -0.02 2.57 16 42 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -81.87 366.72 -1.03 -82.90 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -0.43 Total: 12.89 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.31 Total: 8.74 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -5.91 Total: -120.82 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.76 Total: -35.16 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.26 Total: 1.92 kcal Total: -81.87 -1.03 -82.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053995370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.125 kcal (2) G-P(sol) polarization free energy of solvation -81.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds