Wall clock time and date at job start Wed Apr 1 2020 04:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47252 * 90.00030 * 3 2 1 5 5 H 1.48507 * 109.46974 * 210.00105 * 3 2 1 6 6 H 1.48497 * 109.47056 * 329.99863 * 3 2 1 7 7 C 1.38807 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00153 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99835 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.85143 * 23.80643 * 10 9 7 12 12 C 1.53777 * 113.61733 * 154.99829 * 10 9 7 13 13 C 1.53777 * 87.08288 * 139.98172 * 12 10 9 14 14 H 1.09005 * 113.61473 * 89.12136 * 13 12 10 15 15 C 1.53008 * 113.61560 * 220.02160 * 13 12 10 16 16 N 1.46492 * 109.46878 * 185.00143 * 15 13 12 17 17 C 1.34780 * 119.99656 * 179.97438 * 16 15 13 18 18 O 1.21707 * 120.00371 * 0.02562 * 17 16 15 19 19 C 1.46779 * 119.99994 * 179.97438 * 17 16 15 20 20 N 1.35987 * 126.65827 * 5.86032 * 19 17 16 21 21 C 1.29855 * 108.79787 * 179.97438 * 20 19 17 22 22 O 1.34153 * 109.90279 * 359.97438 * 21 20 19 23 23 C 1.34889 * 108.24524 * 359.72645 * 22 21 20 24 24 C 1.46599 * 126.81661 * 180.29238 * 23 22 21 25 25 C 1.36448 * 125.34674 * 50.93311 * 24 23 22 26 26 C 1.37576 * 114.42251 * 179.85745 * 25 24 23 27 27 C 1.33832 * 115.21209 * 0.43595 * 26 25 24 28 28 S 1.75820 * 109.98256 * 359.75948 * 27 26 25 29 29 C 1.53781 * 113.61628 * 252.49966 * 10 9 7 30 30 H 0.97000 * 120.00060 * 180.02562 * 1 2 3 31 31 H 0.96994 * 120.00394 * 359.97438 * 9 7 2 32 32 H 1.09001 * 113.61966 * 254.53692 * 12 10 9 33 33 H 1.09003 * 113.61427 * 25.43246 * 12 10 9 34 34 H 1.09007 * 109.46828 * 305.00082 * 15 13 12 35 35 H 1.09001 * 109.47022 * 64.99809 * 15 13 12 36 36 H 0.96998 * 120.00466 * 359.97438 * 16 15 13 37 37 H 1.08002 * 125.04665 * 179.97438 * 21 20 19 38 38 H 1.08000 * 122.79068 * 0.03564 * 25 24 23 39 39 H 1.08001 * 122.39372 * 180.20027 * 26 25 24 40 40 H 1.08006 * 125.00527 * 179.78863 * 27 26 25 41 41 H 1.09002 * 113.61032 * 334.56433 * 29 10 9 42 42 H 1.08994 * 113.61910 * 105.46937 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0656 -3.5638 0.4060 12 6 1.2602 -4.8287 0.5960 13 6 1.8480 -5.6975 -0.5284 14 1 2.7986 -6.1634 -0.2687 15 6 0.8449 -6.6852 -1.1280 16 7 1.5261 -7.5431 -2.1005 17 6 0.8360 -8.4956 -2.7586 18 8 -0.3532 -8.6426 -2.5453 19 6 1.5183 -9.3549 -3.7335 20 7 2.8523 -9.3844 -3.9963 21 6 3.0777 -10.2711 -4.9178 22 8 1.9246 -10.8476 -5.2887 23 6 0.9271 -10.3024 -4.5626 24 6 -0.4979 -10.6389 -4.6355 25 6 -1.0159 -11.8993 -4.5651 26 6 -2.3876 -11.9563 -4.6548 27 6 -2.9986 -10.7752 -4.8055 28 16 -1.8078 -9.4820 -4.8349 29 6 1.9991 -4.4021 -1.3433 30 1 -0.4850 -0.8400 0.0004 31 1 0.3556 -2.3880 0.0005 32 1 1.5916 -5.1211 1.5924 33 1 0.1798 -4.7002 0.5291 34 1 0.4221 -7.3007 -0.3338 35 1 0.0462 -6.1349 -1.6254 36 1 2.4737 -7.4258 -2.2709 37 1 4.0493 -10.5090 -5.3250 38 1 -0.4006 -12.7788 -4.4458 39 1 -2.9320 -12.8880 -4.6107 40 1 -4.0660 -10.6369 -4.8954 41 1 1.1208 -4.1569 -1.9404 42 1 2.9271 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086227094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:20 Heat of formation + Delta-G solvation = 58.859271 kcal Electronic energy + Delta-G solvation = -26481.699343 eV Core-core repulsion = 22556.491575 eV Total energy + Delta-G solvation = -3925.207769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.66896 -39.73478 -38.48692 -37.95356 -35.28029 -34.78264 -33.54628 -32.17428 -30.15061 -28.82210 -27.37185 -25.16383 -24.95851 -24.18230 -23.47193 -22.54299 -21.21388 -20.83937 -19.72134 -19.25254 -18.63533 -17.85565 -17.25560 -17.09575 -16.27053 -16.18952 -15.80563 -15.35675 -14.93420 -14.73334 -14.64701 -14.00759 -13.76640 -13.58613 -13.44541 -13.25992 -13.19516 -13.02813 -12.68123 -12.00451 -11.91569 -11.78112 -11.53421 -11.30862 -11.10519 -10.95849 -10.75566 -10.49649 -10.33476 -10.10932 -9.98536 -9.86984 -9.80381 -9.15205 -9.08060 -8.86372 -8.67048 -8.60794 -7.02619 -6.10635 -3.10336 0.00551 0.77823 1.34964 1.66986 1.69671 2.21087 2.41708 2.99158 3.10877 3.51833 3.56772 3.65532 3.70796 4.10040 4.47091 4.67179 4.71335 4.91243 4.92472 4.95323 5.04229 5.13331 5.17445 5.19178 5.45174 5.49998 5.61325 5.62620 5.76921 5.79035 5.88279 5.89359 5.93409 6.02766 6.20138 6.23096 6.28619 6.38984 6.54533 6.74785 6.95667 7.04256 7.44076 7.81767 8.04315 8.75429 9.22630 10.08977 10.24162 11.37707 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.002014 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.928908 B =13899.711739 C =14712.705844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.046 4.046 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.335 4.335 8 H 0.066 0.934 9 N -0.725 5.725 10 C 0.171 3.829 11 H 0.077 0.923 12 C -0.143 4.143 13 C -0.127 4.127 14 H 0.090 0.910 15 C 0.133 3.867 16 N -0.704 5.704 17 C 0.592 3.408 18 O -0.524 6.524 19 C -0.050 4.050 20 N -0.458 5.458 21 C 0.183 3.817 22 O -0.189 6.189 23 C 0.107 3.893 24 C -0.154 4.154 25 C -0.097 4.097 26 C -0.145 4.145 27 C -0.218 4.218 28 S 0.234 5.766 29 C -0.160 4.160 30 H 0.255 0.745 31 H 0.368 0.632 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.408 0.592 37 H 0.259 0.741 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.170 0.830 41 H 0.076 0.924 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.324 -28.492 -11.961 30.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.244 4.244 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.466 4.466 8 H 0.084 0.916 9 N -0.364 5.364 10 C 0.059 3.941 11 H 0.095 0.905 12 C -0.183 4.183 13 C -0.146 4.146 14 H 0.108 0.892 15 C 0.010 3.990 16 N -0.355 5.355 17 C 0.377 3.623 18 O -0.401 6.401 19 C -0.174 4.174 20 N -0.186 5.186 21 C -0.045 4.045 22 O -0.076 6.076 23 C 0.049 3.951 24 C -0.272 4.272 25 C -0.130 4.130 26 C -0.175 4.175 27 C -0.355 4.355 28 S 0.504 5.496 29 C -0.201 4.201 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.244 0.756 37 H 0.274 0.726 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.187 0.813 41 H 0.095 0.905 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.870 -24.862 -11.662 27.475 hybrid contribution 0.271 -3.775 -0.308 3.797 sum 1.141 -28.637 -11.970 31.059 Atomic orbital electron populations 1.70848 1.06060 1.28498 1.53496 1.25797 0.97071 1.01097 1.00388 0.83195 0.73881 0.75313 0.76237 1.22298 1.22145 1.21385 1.20131 0.92086 0.85902 1.48450 0.91648 1.42422 1.04773 1.00898 1.88283 1.21460 0.95302 0.84503 0.92798 0.90527 1.23456 1.00865 0.97097 0.96853 1.22639 0.98512 0.94362 0.99069 0.89164 1.21501 0.95301 0.91484 0.90705 1.45846 1.13776 1.34122 1.41756 1.16579 0.85954 0.79877 0.79919 1.90898 1.13790 1.70293 1.65092 1.22149 0.89467 1.02587 1.03166 1.70677 1.14527 1.18953 1.14466 1.28073 0.90202 0.91490 0.94777 1.84543 1.16517 1.54270 1.52226 1.20487 0.87119 0.94615 0.92842 1.21661 0.90945 0.98189 1.16425 1.20609 0.95241 0.95862 1.01323 1.19895 0.93581 0.98890 1.05115 1.26132 1.04058 0.96494 1.08804 1.84549 0.93229 1.06969 1.64830 1.23934 1.01420 0.94905 0.99891 0.93323 0.79829 0.91874 0.90257 0.91406 0.90958 0.75622 0.72568 0.84030 0.83832 0.81282 0.90504 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.43 13.70 55.49 0.76 -28.67 16 2 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 3 Si 1.08 26.12 29.92 -169.99 -5.09 21.04 16 4 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.33 -9.46 9.97 -15.06 -0.15 -9.61 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -18.23 5.40 -52.64 -0.28 -18.52 16 10 C 0.17 3.38 4.48 -67.12 -0.30 3.08 16 11 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 12 C -0.14 -2.30 7.39 -25.92 -0.19 -2.49 16 13 C -0.13 -1.75 3.75 -89.80 -0.34 -2.09 16 14 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 15 C 0.13 1.79 5.51 -4.04 -0.02 1.77 16 16 N -0.70 -9.09 5.55 -61.58 -0.34 -9.43 16 17 C 0.59 8.36 7.79 -12.81 -0.10 8.26 16 18 O -0.52 -8.36 13.97 5.18 0.07 -8.29 16 19 C -0.05 -0.63 7.07 -82.26 -0.58 -1.22 16 20 N -0.46 -4.87 11.04 -10.98 -0.12 -4.99 16 21 C 0.18 1.32 13.15 51.93 0.68 2.00 16 22 O -0.19 -1.75 10.75 4.48 0.05 -1.70 16 23 C 0.11 1.24 7.24 -35.89 -0.26 0.98 16 24 C -0.15 -1.73 5.61 -36.86 -0.21 -1.94 16 25 C -0.10 -0.90 10.17 -40.47 -0.41 -1.31 16 26 C -0.14 -1.16 10.14 -41.37 -0.42 -1.58 16 27 C -0.22 -1.83 11.22 29.19 0.33 -1.50 16 28 S 0.23 2.55 21.19 -107.50 -2.28 0.27 16 29 C -0.16 -2.73 7.43 -25.92 -0.19 -2.92 16 30 H 0.26 7.84 6.77 -40.82 -0.28 7.56 16 31 H 0.37 9.56 6.76 -40.82 -0.28 9.29 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.07 7.84 -51.93 -0.41 0.67 16 36 H 0.41 4.78 8.21 -40.82 -0.34 4.44 16 37 H 0.26 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -35.00 375.55 -8.96 -43.96 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.13 Total: 10.67 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.26 Total: -10.01 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.01 Total: -61.61 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.12 Total: -9.99 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -5.09 Total: 21.04 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.28 Total: 0.27 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.00 -8.96 -43.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086227094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.822 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds