Wall clock time and date at job start Wed Apr 1 2020 04:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47252 * 90.00030 * 3 2 1 5 5 H 1.48507 * 109.46974 * 210.00105 * 3 2 1 6 6 H 1.48497 * 109.47056 * 329.99863 * 3 2 1 7 7 C 1.38807 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00153 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99835 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.85143 * 23.80643 * 10 9 7 12 12 C 1.53777 * 113.61733 * 154.99829 * 10 9 7 13 13 C 1.53777 * 87.08288 * 139.98172 * 12 10 9 14 14 H 1.09005 * 113.61473 * 89.12136 * 13 12 10 15 15 C 1.53008 * 113.61560 * 220.02160 * 13 12 10 16 16 N 1.46492 * 109.46878 * 185.00143 * 15 13 12 17 17 C 1.34780 * 119.99656 * 179.97438 * 16 15 13 18 18 O 1.21707 * 120.00371 * 0.02562 * 17 16 15 19 19 C 1.46779 * 119.99994 * 179.97438 * 17 16 15 20 20 N 1.35987 * 126.65827 * 5.86032 * 19 17 16 21 21 C 1.29855 * 108.79787 * 179.97438 * 20 19 17 22 22 O 1.34153 * 109.90279 * 359.97438 * 21 20 19 23 23 C 1.34889 * 108.24524 * 359.72645 * 22 21 20 24 24 C 1.46599 * 126.81661 * 180.29238 * 23 22 21 25 25 C 1.36448 * 125.34674 * 50.93311 * 24 23 22 26 26 C 1.37576 * 114.42251 * 179.85745 * 25 24 23 27 27 C 1.33832 * 115.21209 * 0.43595 * 26 25 24 28 28 S 1.75820 * 109.98256 * 359.75948 * 27 26 25 29 29 C 1.53781 * 113.61628 * 252.49966 * 10 9 7 30 30 H 0.97000 * 120.00060 * 180.02562 * 1 2 3 31 31 H 0.96994 * 120.00394 * 359.97438 * 9 7 2 32 32 H 1.09001 * 113.61966 * 254.53692 * 12 10 9 33 33 H 1.09003 * 113.61427 * 25.43246 * 12 10 9 34 34 H 1.09007 * 109.46828 * 305.00082 * 15 13 12 35 35 H 1.09001 * 109.47022 * 64.99809 * 15 13 12 36 36 H 0.96998 * 120.00466 * 359.97438 * 16 15 13 37 37 H 1.08002 * 125.04665 * 179.97438 * 21 20 19 38 38 H 1.08000 * 122.79068 * 0.03564 * 25 24 23 39 39 H 1.08001 * 122.39372 * 180.20027 * 26 25 24 40 40 H 1.08006 * 125.00527 * 179.78863 * 27 26 25 41 41 H 1.09002 * 113.61032 * 334.56433 * 29 10 9 42 42 H 1.08994 * 113.61910 * 105.46937 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 3.0656 -3.5638 0.4060 12 6 1.2602 -4.8287 0.5960 13 6 1.8480 -5.6975 -0.5284 14 1 2.7986 -6.1634 -0.2687 15 6 0.8449 -6.6852 -1.1280 16 7 1.5261 -7.5431 -2.1005 17 6 0.8360 -8.4956 -2.7586 18 8 -0.3532 -8.6426 -2.5453 19 6 1.5183 -9.3549 -3.7335 20 7 2.8523 -9.3844 -3.9963 21 6 3.0777 -10.2711 -4.9178 22 8 1.9246 -10.8476 -5.2887 23 6 0.9271 -10.3024 -4.5626 24 6 -0.4979 -10.6389 -4.6355 25 6 -1.0159 -11.8993 -4.5651 26 6 -2.3876 -11.9563 -4.6548 27 6 -2.9986 -10.7752 -4.8055 28 16 -1.8078 -9.4820 -4.8349 29 6 1.9991 -4.4021 -1.3433 30 1 -0.4850 -0.8400 0.0004 31 1 0.3556 -2.3880 0.0005 32 1 1.5916 -5.1211 1.5924 33 1 0.1798 -4.7002 0.5291 34 1 0.4221 -7.3007 -0.3338 35 1 0.0462 -6.1349 -1.6254 36 1 2.4737 -7.4258 -2.2709 37 1 4.0493 -10.5090 -5.3250 38 1 -0.4006 -12.7788 -4.4458 39 1 -2.9320 -12.8880 -4.6107 40 1 -4.0660 -10.6369 -4.8954 41 1 1.1208 -4.1569 -1.9404 42 1 2.9271 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086227094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:19 Heat of formation + Delta-G solvation = 32.944480 kcal Electronic energy + Delta-G solvation = -26482.823093 eV Core-core repulsion = 22556.491575 eV Total energy + Delta-G solvation = -3926.331518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.38777 -40.87643 -39.83694 -38.62704 -36.33874 -36.02680 -35.17746 -32.91142 -32.01334 -29.74521 -28.54042 -26.56270 -26.00629 -25.47793 -24.78749 -23.32146 -22.57670 -21.81838 -20.65062 -20.36870 -19.61855 -19.25661 -18.62762 -17.82883 -17.33565 -17.05413 -16.75429 -16.59690 -16.30404 -16.03816 -15.67257 -15.38913 -15.19239 -14.97347 -14.57700 -14.36170 -13.94932 -13.67767 -13.47633 -13.36149 -13.34683 -13.15108 -12.67109 -12.57968 -12.53237 -12.08678 -12.05264 -11.85871 -11.81120 -11.71233 -11.44552 -11.32828 -11.00653 -10.83639 -10.58389 -10.18551 -9.44065 -9.37719 -9.09615 -8.39927 -5.33326 -0.75698 0.04353 0.61155 0.94253 1.01493 1.50631 1.57741 1.68812 1.71981 1.82738 2.05036 2.14513 2.71671 3.00264 3.37102 3.37967 3.56164 3.62859 3.67001 3.82256 4.08402 4.12125 4.21569 4.25819 4.29458 4.31528 4.46416 4.49288 4.55694 4.67334 4.86774 4.87189 4.94569 4.99264 5.05517 5.11455 5.22092 5.23871 5.32772 5.41210 5.57676 5.63682 6.17936 6.48609 6.48930 7.01832 7.09359 7.99903 8.12397 9.11978 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.002014 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.928908 B =13899.711739 C =14712.705844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.110 4.110 3 Si 1.131 2.869 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.295 1.295 7 C -0.332 4.332 8 H 0.069 0.931 9 N -0.742 5.742 10 C 0.148 3.852 11 H 0.078 0.922 12 C -0.133 4.133 13 C -0.096 4.096 14 H 0.118 0.882 15 C 0.141 3.859 16 N -0.699 5.699 17 C 0.586 3.414 18 O -0.549 6.549 19 C -0.074 4.074 20 N -0.485 5.485 21 C 0.210 3.790 22 O -0.188 6.188 23 C 0.102 3.898 24 C -0.178 4.178 25 C -0.091 4.091 26 C -0.146 4.146 27 C -0.205 4.205 28 S 0.170 5.830 29 C -0.154 4.154 30 H 0.243 0.757 31 H 0.359 0.641 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.415 0.585 37 H 0.312 0.688 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.195 0.805 41 H 0.056 0.944 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -30.953 -12.472 33.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.300 4.300 3 Si 0.955 3.045 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.221 1.221 7 C -0.463 4.463 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.039 3.961 11 H 0.096 0.904 12 C -0.173 4.173 13 C -0.115 4.115 14 H 0.136 0.864 15 C 0.017 3.983 16 N -0.350 5.350 17 C 0.372 3.628 18 O -0.428 6.428 19 C -0.196 4.196 20 N -0.213 5.213 21 C -0.018 4.018 22 O -0.075 6.075 23 C 0.043 3.957 24 C -0.296 4.296 25 C -0.124 4.124 26 C -0.176 4.176 27 C -0.342 4.342 28 S 0.439 5.561 29 C -0.194 4.194 30 H 0.054 0.946 31 H 0.191 0.809 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.252 0.748 37 H 0.327 0.673 38 H 0.178 0.822 39 H 0.193 0.807 40 H 0.212 0.788 41 H 0.075 0.925 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.696 -27.380 -12.166 30.082 hybrid contribution -0.230 -3.182 -0.205 3.197 sum 2.466 -30.562 -12.371 33.063 Atomic orbital electron populations 1.70962 1.07248 1.27870 1.56526 1.27247 0.97149 1.04861 1.00763 0.82586 0.73540 0.71460 0.76876 1.21050 1.19722 1.22121 1.20495 0.92451 0.87154 1.46215 0.91305 1.42641 1.04559 1.02033 1.88873 1.21880 0.95535 0.83540 0.95146 0.90401 1.23319 0.99990 0.95523 0.98463 1.22459 0.99471 0.92949 0.96598 0.86372 1.21311 0.94748 0.91370 0.90830 1.45743 1.14002 1.33763 1.41481 1.16870 0.85804 0.80020 0.80077 1.90878 1.14878 1.71068 1.65940 1.21960 0.90566 1.03313 1.03782 1.70656 1.13480 1.20824 1.16357 1.29337 0.91005 0.88979 0.92522 1.84574 1.16717 1.54299 1.51932 1.20565 0.87696 0.94593 0.92840 1.21791 0.90867 0.98626 1.18313 1.20991 0.96149 0.95730 0.99578 1.20276 0.93252 0.99947 1.04081 1.26443 1.04614 0.95337 1.07810 1.84712 0.95361 1.09516 1.66544 1.23725 1.00935 0.96226 0.98547 0.94623 0.80894 0.90078 0.91126 0.90898 0.92803 0.74804 0.67314 0.82157 0.80660 0.78799 0.92545 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.58 13.70 21.65 0.30 -62.29 16 2 C -0.11 -6.48 5.50 84.86 0.47 -6.01 16 3 Si 1.13 52.75 29.92 68.60 2.05 54.81 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.33 -18.91 9.97 84.03 0.84 -18.07 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -38.04 5.40 -320.45 -1.73 -39.77 16 10 C 0.15 5.81 4.48 45.52 0.20 6.02 16 11 H 0.08 3.02 8.10 -2.38 -0.02 3.00 16 12 C -0.13 -4.17 7.39 31.12 0.23 -3.94 16 13 C -0.10 -2.50 3.75 -10.27 -0.04 -2.54 16 14 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 15 C 0.14 3.74 5.51 86.38 0.48 4.21 16 16 N -0.70 -17.72 5.55 -466.95 -2.59 -20.31 16 17 C 0.59 16.75 7.79 86.48 0.67 17.43 16 18 O -0.55 -18.10 13.97 -4.37 -0.06 -18.16 16 19 C -0.07 -1.85 7.07 40.94 0.29 -1.56 16 20 N -0.49 -9.57 11.04 -303.53 -3.35 -12.92 16 21 C 0.21 2.45 13.15 130.53 1.72 4.16 16 22 O -0.19 -3.14 10.75 -6.88 -0.07 -3.21 16 23 C 0.10 2.31 7.24 24.66 0.18 2.48 16 24 C -0.18 -3.99 5.61 24.04 0.13 -3.85 16 25 C -0.09 -1.56 10.17 21.70 0.22 -1.34 16 26 C -0.15 -2.05 10.14 21.11 0.21 -1.83 16 27 C -0.21 -3.22 11.22 66.82 0.75 -2.47 16 28 S 0.17 3.83 21.19 -56.49 -1.20 2.63 16 29 C -0.15 -5.17 7.43 31.12 0.23 -4.94 16 30 H 0.24 15.56 6.77 -92.71 -0.63 14.93 16 31 H 0.36 19.39 6.76 -92.71 -0.63 18.77 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.35 8.08 -2.39 -0.02 2.33 16 34 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.05 1.65 7.84 -2.39 -0.02 1.63 16 36 H 0.42 9.25 8.21 -92.71 -0.76 8.49 16 37 H 0.31 -0.50 8.06 -2.91 -0.02 -0.53 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.06 2.14 7.90 -2.39 -0.02 2.13 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -78.86 375.55 -0.24 -79.09 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.17 Total: 32.36 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 6.58 Total: -12.23 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -7.38 Total: -135.29 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.14 Total: -21.37 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.81 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.20 Total: 2.63 kcal Total: -78.86 -0.24 -79.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086227094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.037 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds