Wall clock time and date at job start Wed Apr 1 2020 04:53:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86801 * 119.99796 * 2 1
4 4 H 1.48499 * 109.47252 * 90.00030 * 3 2 1
5 5 H 1.48507 * 109.46974 * 210.00105 * 3 2 1
6 6 H 1.48497 * 109.47056 * 329.99863 * 3 2 1
7 7 C 1.38807 * 120.00123 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00153 * 179.97438 * 7 2 1
9 9 N 1.36938 * 119.99724 * 0.02562 * 7 2 1
10 10 C 1.46501 * 119.99835 * 179.97438 * 9 7 2
11 11 H 1.09005 * 112.85143 * 23.80643 * 10 9 7
12 12 C 1.53777 * 113.61733 * 154.99829 * 10 9 7
13 13 C 1.53777 * 87.08288 * 139.98172 * 12 10 9
14 14 H 1.09005 * 113.61473 * 89.12136 * 13 12 10
15 15 C 1.53008 * 113.61560 * 220.02160 * 13 12 10
16 16 N 1.46492 * 109.46878 * 185.00143 * 15 13 12
17 17 C 1.34780 * 119.99656 * 179.97438 * 16 15 13
18 18 O 1.21707 * 120.00371 * 0.02562 * 17 16 15
19 19 C 1.46779 * 119.99994 * 179.97438 * 17 16 15
20 20 N 1.35987 * 126.65827 * 5.86032 * 19 17 16
21 21 C 1.29855 * 108.79787 * 179.97438 * 20 19 17
22 22 O 1.34153 * 109.90279 * 359.97438 * 21 20 19
23 23 C 1.34889 * 108.24524 * 359.72645 * 22 21 20
24 24 C 1.46599 * 126.81661 * 180.29238 * 23 22 21
25 25 C 1.36448 * 125.34674 * 50.93311 * 24 23 22
26 26 C 1.37576 * 114.42251 * 179.85745 * 25 24 23
27 27 C 1.33832 * 115.21209 * 0.43595 * 26 25 24
28 28 S 1.75820 * 109.98256 * 359.75948 * 27 26 25
29 29 C 1.53781 * 113.61628 * 252.49966 * 10 9 7
30 30 H 0.97000 * 120.00060 * 180.02562 * 1 2 3
31 31 H 0.96994 * 120.00394 * 359.97438 * 9 7 2
32 32 H 1.09001 * 113.61966 * 254.53692 * 12 10 9
33 33 H 1.09003 * 113.61427 * 25.43246 * 12 10 9
34 34 H 1.09007 * 109.46828 * 305.00082 * 15 13 12
35 35 H 1.09001 * 109.47022 * 64.99809 * 15 13 12
36 36 H 0.96998 * 120.00466 * 359.97438 * 16 15 13
37 37 H 1.08002 * 125.04665 * 179.97438 * 21 20 19
38 38 H 1.08000 * 122.79068 * 0.03564 * 25 24 23
39 39 H 1.08001 * 122.39372 * 180.20027 * 26 25 24
40 40 H 1.08006 * 125.00527 * 179.78863 * 27 26 25
41 41 H 1.09002 * 113.61032 * 334.56433 * 29 10 9
42 42 H 1.08994 * 113.61910 * 105.46937 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4976 2.0465 1.4001
5 1 3.5477 1.4402 -0.7001
6 1 1.4475 2.6526 -0.7001
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2021 0.0001
9 7 1.3255 -2.3880 0.0005
10 6 2.0580 -3.6567 0.0005
11 1 3.0656 -3.5638 0.4060
12 6 1.2602 -4.8287 0.5960
13 6 1.8480 -5.6975 -0.5284
14 1 2.7986 -6.1634 -0.2687
15 6 0.8449 -6.6852 -1.1280
16 7 1.5261 -7.5431 -2.1005
17 6 0.8360 -8.4956 -2.7586
18 8 -0.3532 -8.6426 -2.5453
19 6 1.5183 -9.3549 -3.7335
20 7 2.8523 -9.3844 -3.9963
21 6 3.0777 -10.2711 -4.9178
22 8 1.9246 -10.8476 -5.2887
23 6 0.9271 -10.3024 -4.5626
24 6 -0.4979 -10.6389 -4.6355
25 6 -1.0159 -11.8993 -4.5651
26 6 -2.3876 -11.9563 -4.6548
27 6 -2.9986 -10.7752 -4.8055
28 16 -1.8078 -9.4820 -4.8349
29 6 1.9991 -4.4021 -1.3433
30 1 -0.4850 -0.8400 0.0004
31 1 0.3556 -2.3880 0.0005
32 1 1.5916 -5.1211 1.5924
33 1 0.1798 -4.7002 0.5291
34 1 0.4221 -7.3007 -0.3338
35 1 0.0462 -6.1349 -1.6254
36 1 2.4737 -7.4258 -2.2709
37 1 4.0493 -10.5090 -5.3250
38 1 -0.4006 -12.7788 -4.4458
39 1 -2.9320 -12.8880 -4.6107
40 1 -4.0660 -10.6369 -4.8954
41 1 1.1208 -4.1569 -1.9404
42 1 2.9271 -4.3501 -1.9125
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001086227094.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:53:19
Heat of formation + Delta-G solvation = 32.944480 kcal
Electronic energy + Delta-G solvation = -26482.823093 eV
Core-core repulsion = 22556.491575 eV
Total energy + Delta-G solvation = -3926.331518 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-44.38777 -40.87643 -39.83694 -38.62704 -36.33874 -36.02680 -35.17746 -32.91142
-32.01334 -29.74521 -28.54042 -26.56270 -26.00629 -25.47793 -24.78749 -23.32146
-22.57670 -21.81838 -20.65062 -20.36870 -19.61855 -19.25661 -18.62762 -17.82883
-17.33565 -17.05413 -16.75429 -16.59690 -16.30404 -16.03816 -15.67257 -15.38913
-15.19239 -14.97347 -14.57700 -14.36170 -13.94932 -13.67767 -13.47633 -13.36149
-13.34683 -13.15108 -12.67109 -12.57968 -12.53237 -12.08678 -12.05264 -11.85871
-11.81120 -11.71233 -11.44552 -11.32828 -11.00653 -10.83639 -10.58389 -10.18551
-9.44065 -9.37719 -9.09615 -8.39927 -5.33326 -0.75698 0.04353 0.61155
0.94253 1.01493 1.50631 1.57741 1.68812 1.71981 1.82738 2.05036
2.14513 2.71671 3.00264 3.37102 3.37967 3.56164 3.62859 3.67001
3.82256 4.08402 4.12125 4.21569 4.25819 4.29458 4.31528 4.46416
4.49288 4.55694 4.67334 4.86774 4.87189 4.94569 4.99264 5.05517
5.11455 5.22092 5.23871 5.32772 5.41210 5.57676 5.63682 6.17936
6.48609 6.48930 7.01832 7.09359 7.99903 8.12397 9.11978
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.016763 B = 0.002014 C = 0.001903
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1669.928908 B =13899.711739 C =14712.705844
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.978 5.978
2 C -0.110 4.110
3 Si 1.131 2.869
4 H -0.284 1.284
5 H -0.272 1.272
6 H -0.295 1.295
7 C -0.332 4.332
8 H 0.069 0.931
9 N -0.742 5.742
10 C 0.148 3.852
11 H 0.078 0.922
12 C -0.133 4.133
13 C -0.096 4.096
14 H 0.118 0.882
15 C 0.141 3.859
16 N -0.699 5.699
17 C 0.586 3.414
18 O -0.549 6.549
19 C -0.074 4.074
20 N -0.485 5.485
21 C 0.210 3.790
22 O -0.188 6.188
23 C 0.102 3.898
24 C -0.178 4.178
25 C -0.091 4.091
26 C -0.146 4.146
27 C -0.205 4.205
28 S 0.170 5.830
29 C -0.154 4.154
30 H 0.243 0.757
31 H 0.359 0.641
32 H 0.081 0.919
33 H 0.070 0.930
34 H 0.073 0.927
35 H 0.054 0.946
36 H 0.415 0.585
37 H 0.312 0.688
38 H 0.161 0.839
39 H 0.176 0.824
40 H 0.195 0.805
41 H 0.056 0.944
42 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.096 -30.953 -12.472 33.515
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.626 5.626
2 C -0.300 4.300
3 Si 0.955 3.045
4 H -0.210 1.210
5 H -0.197 1.197
6 H -0.221 1.221
7 C -0.463 4.463
8 H 0.087 0.913
9 N -0.381 5.381
10 C 0.039 3.961
11 H 0.096 0.904
12 C -0.173 4.173
13 C -0.115 4.115
14 H 0.136 0.864
15 C 0.017 3.983
16 N -0.350 5.350
17 C 0.372 3.628
18 O -0.428 6.428
19 C -0.196 4.196
20 N -0.213 5.213
21 C -0.018 4.018
22 O -0.075 6.075
23 C 0.043 3.957
24 C -0.296 4.296
25 C -0.124 4.124
26 C -0.176 4.176
27 C -0.342 4.342
28 S 0.439 5.561
29 C -0.194 4.194
30 H 0.054 0.946
31 H 0.191 0.809
32 H 0.099 0.901
33 H 0.089 0.911
34 H 0.091 0.909
35 H 0.072 0.928
36 H 0.252 0.748
37 H 0.327 0.673
38 H 0.178 0.822
39 H 0.193 0.807
40 H 0.212 0.788
41 H 0.075 0.925
42 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 2.696 -27.380 -12.166 30.082
hybrid contribution -0.230 -3.182 -0.205 3.197
sum 2.466 -30.562 -12.371 33.063
Atomic orbital electron populations
1.70962 1.07248 1.27870 1.56526 1.27247 0.97149 1.04861 1.00763
0.82586 0.73540 0.71460 0.76876 1.21050 1.19722 1.22121 1.20495
0.92451 0.87154 1.46215 0.91305 1.42641 1.04559 1.02033 1.88873
1.21880 0.95535 0.83540 0.95146 0.90401 1.23319 0.99990 0.95523
0.98463 1.22459 0.99471 0.92949 0.96598 0.86372 1.21311 0.94748
0.91370 0.90830 1.45743 1.14002 1.33763 1.41481 1.16870 0.85804
0.80020 0.80077 1.90878 1.14878 1.71068 1.65940 1.21960 0.90566
1.03313 1.03782 1.70656 1.13480 1.20824 1.16357 1.29337 0.91005
0.88979 0.92522 1.84574 1.16717 1.54299 1.51932 1.20565 0.87696
0.94593 0.92840 1.21791 0.90867 0.98626 1.18313 1.20991 0.96149
0.95730 0.99578 1.20276 0.93252 0.99947 1.04081 1.26443 1.04614
0.95337 1.07810 1.84712 0.95361 1.09516 1.66544 1.23725 1.00935
0.96226 0.98547 0.94623 0.80894 0.90078 0.91126 0.90898 0.92803
0.74804 0.67314 0.82157 0.80660 0.78799 0.92545 0.91793
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -62.58 13.70 21.65 0.30 -62.29 16
2 C -0.11 -6.48 5.50 84.86 0.47 -6.01 16
3 Si 1.13 52.75 29.92 68.60 2.05 54.81 16
4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16
5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16
6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16
7 C -0.33 -18.91 9.97 84.03 0.84 -18.07 16
8 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16
9 N -0.74 -38.04 5.40 -320.45 -1.73 -39.77 16
10 C 0.15 5.81 4.48 45.52 0.20 6.02 16
11 H 0.08 3.02 8.10 -2.38 -0.02 3.00 16
12 C -0.13 -4.17 7.39 31.12 0.23 -3.94 16
13 C -0.10 -2.50 3.75 -10.27 -0.04 -2.54 16
14 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16
15 C 0.14 3.74 5.51 86.38 0.48 4.21 16
16 N -0.70 -17.72 5.55 -466.95 -2.59 -20.31 16
17 C 0.59 16.75 7.79 86.48 0.67 17.43 16
18 O -0.55 -18.10 13.97 -4.37 -0.06 -18.16 16
19 C -0.07 -1.85 7.07 40.94 0.29 -1.56 16
20 N -0.49 -9.57 11.04 -303.53 -3.35 -12.92 16
21 C 0.21 2.45 13.15 130.53 1.72 4.16 16
22 O -0.19 -3.14 10.75 -6.88 -0.07 -3.21 16
23 C 0.10 2.31 7.24 24.66 0.18 2.48 16
24 C -0.18 -3.99 5.61 24.04 0.13 -3.85 16
25 C -0.09 -1.56 10.17 21.70 0.22 -1.34 16
26 C -0.15 -2.05 10.14 21.11 0.21 -1.83 16
27 C -0.21 -3.22 11.22 66.82 0.75 -2.47 16
28 S 0.17 3.83 21.19 -56.49 -1.20 2.63 16
29 C -0.15 -5.17 7.43 31.12 0.23 -4.94 16
30 H 0.24 15.56 6.77 -92.71 -0.63 14.93 16
31 H 0.36 19.39 6.76 -92.71 -0.63 18.77 16
32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
33 H 0.07 2.35 8.08 -2.39 -0.02 2.33 16
34 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16
35 H 0.05 1.65 7.84 -2.39 -0.02 1.63 16
36 H 0.42 9.25 8.21 -92.71 -0.76 8.49 16
37 H 0.31 -0.50 8.06 -2.91 -0.02 -0.53 16
38 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16
39 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16
40 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16
41 H 0.06 2.14 7.90 -2.39 -0.02 2.13 16
42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
Total: -1.00 -78.86 375.55 -0.24 -79.09
By element:
Atomic # 1 Polarization: 32.52 SS G_CDS: -0.17 Total: 32.36 kcal
Atomic # 6 Polarization: -18.82 SS G_CDS: 6.58 Total: -12.23 kcal
Atomic # 7 Polarization: -127.91 SS G_CDS: -7.38 Total: -135.29 kcal
Atomic # 8 Polarization: -21.24 SS G_CDS: -0.14 Total: -21.37 kcal
Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.81 kcal
Atomic # 16 Polarization: 3.83 SS G_CDS: -1.20 Total: 2.63 kcal
Total: -78.86 -0.24 -79.09 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086227094.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.037 kcal
(2) G-P(sol) polarization free energy of solvation -78.855 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.182 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.944 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds