Wall clock time and date at job start Wed Apr 1 2020 04:46:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86801 * 119.99833 * 2 1
4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1
6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1
7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1
9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1
10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2
11 11 H 1.08995 * 112.84849 * 25.33188 * 10 9 7
12 12 C 1.53780 * 113.61394 * 156.53369 * 10 9 7
13 13 C 1.53780 * 87.08084 * 89.11215 * 12 10 9
14 14 H 1.08998 * 113.61414 * 270.79655 * 13 12 10
15 15 C 1.53006 * 113.61008 * 139.98268 * 13 12 10
16 16 N 1.46503 * 109.46861 * 174.99524 * 15 13 12
17 17 C 1.34769 * 119.99685 * 179.97438 * 16 15 13
18 18 O 1.21632 * 120.00681 * 0.02562 * 17 16 15
19 19 C 1.47304 * 119.99770 * 180.02562 * 17 16 15
20 20 C 1.35174 * 122.41465 * 180.02562 * 19 17 16
21 21 S 1.71005 * 109.15664 * 179.97438 * 20 19 17
22 22 C 1.75991 * 90.59781 * 359.97438 * 21 20 19
23 23 C 1.47144 * 125.33120 * 179.97438 * 22 21 20
24 24 C 1.36243 * 125.95674 * 359.74414 * 23 22 21
25 25 C 1.40768 * 106.72342 * 179.85315 * 24 23 22
26 26 C 1.34833 * 107.06740 * 0.40823 * 25 24 23
27 27 O 1.34244 * 108.72497 * 359.74467 * 26 25 24
28 28 N 1.30123 * 109.34091 * 359.76144 * 22 21 20
29 29 C 1.53782 * 113.60882 * 254.13627 * 10 9 7
30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3
31 31 H 0.97000 * 119.99808 * 0.27579 * 9 7 2
32 32 H 1.08997 * 113.61165 * 203.66434 * 12 10 9
33 33 H 1.09006 * 113.61126 * 334.47938 * 12 10 9
34 34 H 1.08994 * 109.46800 * 294.99565 * 15 13 12
35 35 H 1.08995 * 109.46974 * 54.99976 * 15 13 12
36 36 H 0.97000 * 120.00144 * 0.02562 * 16 15 13
37 37 H 1.07995 * 125.41875 * 359.97438 * 20 19 17
38 38 H 1.08004 * 126.63460 * 359.97438 * 24 23 22
39 39 H 1.07996 * 126.45962 * 180.15100 * 25 24 23
40 40 H 1.08002 * 125.63630 * 179.72613 * 26 25 24
41 41 H 1.08997 * 113.62016 * 25.43643 * 29 10 9
42 42 H 1.09002 * 113.61061 * 156.33834 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7102 1.3465 0.0006
5 1 1.8914 2.3964 -1.2126
6 1 1.8913 2.3965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3880 0.0068
10 6 2.0582 -3.6567 0.0135
11 1 3.0560 -3.5670 0.4429
12 6 1.2469 -4.8335 0.5808
13 6 0.7403 -5.0723 -0.8513
14 1 -0.1659 -4.5165 -1.0922
15 6 0.6482 -6.5519 -1.2301
16 7 0.0468 -6.6790 -2.5600
17 6 -0.1344 -7.8987 -3.1037
18 8 0.2008 -8.8941 -2.4902
19 6 -0.7385 -8.0265 -4.4411
20 6 -0.9432 -9.2248 -5.0322
21 16 -1.6582 -8.9790 -6.5660
22 6 -1.6402 -7.2370 -6.3158
23 6 -2.1331 -6.2346 -7.2735
24 6 -2.6723 -6.4948 -8.4974
25 6 -3.0066 -5.2509 -9.0654
26 6 -2.6515 -4.3016 -8.1763
27 8 -2.1246 -4.8987 -7.0956
28 7 -1.1268 -6.9745 -5.1492
29 6 2.0327 -4.3899 -1.3380
30 1 -0.4850 0.8400 -0.0004
31 1 0.3556 -2.3880 0.0068
32 1 1.8650 -5.6444 0.9662
33 1 0.4652 -4.5295 1.2770
34 1 1.6474 -6.9872 -1.2400
35 1 0.0307 -7.0759 -0.5006
36 1 -0.2202 -5.8852 -3.0494
37 1 -0.6946 -10.1845 -4.6040
38 1 -2.8172 -7.4673 -8.9442
39 1 -3.4581 -5.0878 -10.0328
40 1 -2.7711 -3.2367 -8.3113
41 1 1.8840 -3.7280 -2.1912
42 1 2.8652 -5.0797 -1.4763
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001086461373.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:56
Heat of formation + Delta-G solvation = 60.211087 kcal
Electronic energy + Delta-G solvation = -26294.413577 eV
Core-core repulsion = 22369.264428 eV
Total energy + Delta-G solvation = -3925.149149 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.91805 -40.66485 -39.05069 -38.21467 -34.68922 -33.56014 -33.17413 -32.16265
-30.19210 -29.34662 -27.89207 -25.70225 -25.02394 -23.89219 -23.15082 -22.29107
-21.58021 -20.89508 -19.79631 -19.13456 -18.29861 -17.75382 -17.36907 -16.81791
-16.54763 -16.00106 -15.67760 -15.53059 -14.94205 -14.51286 -14.40561 -13.99193
-13.96083 -13.61106 -13.36552 -13.34308 -13.15077 -12.92081 -12.89373 -12.38591
-12.24802 -11.88478 -11.36200 -11.02489 -10.84874 -10.61056 -10.51585 -10.47415
-10.30135 -10.28030 -10.11531 -9.84521 -9.78138 -9.67401 -9.45842 -9.00047
-8.86590 -8.46518 -6.97842 -5.78918 -3.07847 -0.23743 0.48497 1.05721
1.10308 1.86748 2.32628 2.63913 3.13906 3.21424 3.42577 3.48409
3.50595 3.51187 4.35303 4.48453 4.57226 4.64202 4.78555 4.81337
5.07797 5.09840 5.24618 5.29286 5.30550 5.44200 5.47371 5.57081
5.65317 5.72224 5.88127 5.95954 5.97450 6.12820 6.23717 6.39215
6.40716 6.59028 6.61843 6.78859 6.91928 6.98539 7.07732 7.53161
7.71172 8.10900 8.40214 9.50890 10.08796 10.43021 11.43620
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.009583 B = 0.002491 C = 0.002018
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2921.043122 B =11235.685183 C =13874.553071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.014 4.014
3 Si 0.908 3.092
4 H -0.280 1.280
5 H -0.291 1.291
6 H -0.291 1.291
7 C -0.240 4.240
8 H 0.072 0.928
9 N -0.706 5.706
10 C 0.168 3.832
11 H 0.061 0.939
12 C -0.146 4.146
13 C -0.120 4.120
14 H 0.094 0.906
15 C 0.130 3.870
16 N -0.702 5.702
17 C 0.588 3.412
18 O -0.540 6.540
19 C 0.019 3.981
20 C -0.217 4.217
21 S 0.224 5.776
22 C 0.109 3.891
23 C 0.046 3.954
24 C -0.167 4.167
25 C -0.216 4.216
26 C -0.008 4.008
27 O -0.147 6.147
28 N -0.422 5.422
29 C -0.168 4.168
30 H 0.255 0.745
31 H 0.385 0.615
32 H 0.077 0.923
33 H 0.068 0.932
34 H 0.069 0.931
35 H 0.067 0.933
36 H 0.413 0.587
37 H 0.197 0.803
38 H 0.155 0.845
39 H 0.157 0.843
40 H 0.212 0.788
41 H 0.067 0.933
42 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.802 -19.104 -19.003 27.791
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.209 4.209
3 Si 0.739 3.261
4 H -0.205 1.205
5 H -0.219 1.219
6 H -0.219 1.219
7 C -0.372 4.372
8 H 0.090 0.910
9 N -0.345 5.345
10 C 0.055 3.945
11 H 0.080 0.920
12 C -0.186 4.186
13 C -0.139 4.139
14 H 0.112 0.888
15 C 0.007 3.993
16 N -0.352 5.352
17 C 0.371 3.629
18 O -0.418 6.418
19 C -0.117 4.117
20 C -0.360 4.360
21 S 0.481 5.519
22 C -0.166 4.166
23 C -0.008 4.008
24 C -0.190 4.190
25 C -0.236 4.236
26 C -0.079 4.079
27 O -0.041 6.041
28 N -0.137 5.137
29 C -0.210 4.210
30 H 0.065 0.935
31 H 0.219 0.781
32 H 0.096 0.904
33 H 0.087 0.913
34 H 0.087 0.913
35 H 0.085 0.915
36 H 0.249 0.751
37 H 0.214 0.786
38 H 0.173 0.827
39 H 0.175 0.825
40 H 0.229 0.771
41 H 0.086 0.914
42 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -6.566 -19.632 -18.807 27.968
hybrid contribution 0.222 1.363 0.346 1.423
sum -6.345 -18.269 -18.461 26.736
Atomic orbital electron populations
1.69670 1.05124 1.25630 1.57599 1.24763 0.95540 0.97776 1.02868
0.86104 0.78818 0.84024 0.77172 1.20503 1.21850 1.21852 1.19332
0.91136 0.83962 1.42724 0.90959 1.42185 1.05701 0.99444 1.87157
1.21051 0.94996 0.85605 0.92817 0.92042 1.23418 1.00587 0.99659
0.94923 1.22766 0.99785 0.92818 0.98496 0.88773 1.21576 0.98063
0.97429 0.82254 1.45931 1.61469 1.08158 1.19640 1.17077 0.78499
0.84039 0.83278 1.90809 1.51877 1.37162 1.61964 1.20239 1.05711
0.87557 0.98230 1.26682 1.05269 1.04371 0.99635 1.83703 1.53970
1.00863 1.13316 1.24311 1.04098 0.94293 0.93913 1.18827 1.06887
0.80867 0.94180 1.21809 1.03314 1.00264 0.93650 1.21753 1.07730
0.91638 1.02433 1.24461 0.98886 0.99561 0.85017 1.84240 1.62938
1.17626 1.39286 1.67199 1.10808 1.31931 1.03772 1.23935 0.95428
0.99626 1.01963 0.93511 0.78096 0.90412 0.91281 0.91267 0.91508
0.75116 0.78584 0.82691 0.82505 0.77137 0.91421 0.91425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16
2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16
3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16
4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
7 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16
8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16
9 N -0.71 -17.70 5.31 -52.63 -0.28 -17.98 16
10 C 0.17 3.34 4.55 -67.12 -0.31 3.03 16
11 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16
12 C -0.15 -2.40 7.38 -25.92 -0.19 -2.59 16
13 C -0.12 -1.90 3.65 -89.67 -0.33 -2.23 16
14 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16
15 C 0.13 1.87 5.51 -4.04 -0.02 1.84 16
16 N -0.70 -10.17 5.55 -61.42 -0.34 -10.51 16
17 C 0.59 8.78 7.79 -12.58 -0.10 8.68 16
18 O -0.54 -9.15 16.65 5.25 0.09 -9.06 16
19 C 0.02 0.25 6.64 -84.93 -0.56 -0.32 16
20 C -0.22 -2.14 10.56 29.64 0.31 -1.82 16
21 S 0.22 1.64 22.93 -107.50 -2.46 -0.82 16
22 C 0.11 1.19 7.46 -14.66 -0.11 1.08 16
23 C 0.05 0.48 7.24 -36.69 -0.27 0.22 16
24 C -0.17 -1.28 10.63 -39.34 -0.42 -1.70 16
25 C -0.22 -1.47 10.88 -39.83 -0.43 -1.90 16
26 C -0.01 -0.07 12.08 29.52 0.36 0.29 16
27 O -0.15 -1.70 10.67 4.58 0.05 -1.65 16
28 N -0.42 -5.60 10.08 -8.28 -0.08 -5.68 16
29 C -0.17 -2.94 7.45 -25.78 -0.19 -3.13 16
30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
31 H 0.39 10.21 7.90 -40.82 -0.32 9.89 16
32 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16
33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
34 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16
35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
36 H 0.41 5.95 7.95 -40.82 -0.32 5.62 16
37 H 0.20 1.62 7.99 -52.49 -0.42 1.20 16
38 H 0.16 0.77 8.06 -52.48 -0.42 0.35 16
39 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16
40 H 0.21 0.89 8.06 -52.49 -0.42 0.47 16
41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16
42 H 0.07 1.06 7.90 -51.93 -0.41 0.65 16
LS Contribution 381.09 15.07 5.74 5.74
Total: -1.00 -33.93 381.09 -9.32 -43.26
By element:
Atomic # 1 Polarization: 17.81 SS G_CDS: -5.23 Total: 12.58 kcal
Atomic # 6 Polarization: -3.36 SS G_CDS: -2.50 Total: -5.86 kcal
Atomic # 7 Polarization: -61.58 SS G_CDS: 0.02 Total: -61.56 kcal
Atomic # 8 Polarization: -10.85 SS G_CDS: 0.14 Total: -10.71 kcal
Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal
Atomic # 16 Polarization: 1.64 SS G_CDS: -2.46 Total: -0.82 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -33.93 -9.32 -43.26 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086461373.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.469 kcal
(2) G-P(sol) polarization free energy of solvation -33.935 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.534 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.211 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds