Wall clock time and date at job start Wed Apr 1 2020 04:46:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86801 * 119.99833 * 2 1
4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1
6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1
7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1
9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1
10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2
11 11 H 1.08995 * 112.84849 * 25.33188 * 10 9 7
12 12 C 1.53780 * 113.61394 * 156.53369 * 10 9 7
13 13 C 1.53780 * 87.08084 * 89.11215 * 12 10 9
14 14 H 1.08998 * 113.61414 * 270.79655 * 13 12 10
15 15 C 1.53006 * 113.61008 * 139.98268 * 13 12 10
16 16 N 1.46503 * 109.46861 * 174.99524 * 15 13 12
17 17 C 1.34769 * 119.99685 * 179.97438 * 16 15 13
18 18 O 1.21632 * 120.00681 * 0.02562 * 17 16 15
19 19 C 1.47304 * 119.99770 * 180.02562 * 17 16 15
20 20 C 1.35174 * 122.41465 * 180.02562 * 19 17 16
21 21 S 1.71005 * 109.15664 * 179.97438 * 20 19 17
22 22 C 1.75991 * 90.59781 * 359.97438 * 21 20 19
23 23 C 1.47144 * 125.33120 * 179.97438 * 22 21 20
24 24 C 1.36243 * 125.95674 * 359.74414 * 23 22 21
25 25 C 1.40768 * 106.72342 * 179.85315 * 24 23 22
26 26 C 1.34833 * 107.06740 * 0.40823 * 25 24 23
27 27 O 1.34244 * 108.72497 * 359.74467 * 26 25 24
28 28 N 1.30123 * 109.34091 * 359.76144 * 22 21 20
29 29 C 1.53782 * 113.60882 * 254.13627 * 10 9 7
30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3
31 31 H 0.97000 * 119.99808 * 0.27579 * 9 7 2
32 32 H 1.08997 * 113.61165 * 203.66434 * 12 10 9
33 33 H 1.09006 * 113.61126 * 334.47938 * 12 10 9
34 34 H 1.08994 * 109.46800 * 294.99565 * 15 13 12
35 35 H 1.08995 * 109.46974 * 54.99976 * 15 13 12
36 36 H 0.97000 * 120.00144 * 0.02562 * 16 15 13
37 37 H 1.07995 * 125.41875 * 359.97438 * 20 19 17
38 38 H 1.08004 * 126.63460 * 359.97438 * 24 23 22
39 39 H 1.07996 * 126.45962 * 180.15100 * 25 24 23
40 40 H 1.08002 * 125.63630 * 179.72613 * 26 25 24
41 41 H 1.08997 * 113.62016 * 25.43643 * 29 10 9
42 42 H 1.09002 * 113.61061 * 156.33834 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7102 1.3465 0.0006
5 1 1.8914 2.3964 -1.2126
6 1 1.8913 2.3965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3880 0.0068
10 6 2.0582 -3.6567 0.0135
11 1 3.0560 -3.5670 0.4429
12 6 1.2469 -4.8335 0.5808
13 6 0.7403 -5.0723 -0.8513
14 1 -0.1659 -4.5165 -1.0922
15 6 0.6482 -6.5519 -1.2301
16 7 0.0468 -6.6790 -2.5600
17 6 -0.1344 -7.8987 -3.1037
18 8 0.2008 -8.8941 -2.4902
19 6 -0.7385 -8.0265 -4.4411
20 6 -0.9432 -9.2248 -5.0322
21 16 -1.6582 -8.9790 -6.5660
22 6 -1.6402 -7.2370 -6.3158
23 6 -2.1331 -6.2346 -7.2735
24 6 -2.6723 -6.4948 -8.4974
25 6 -3.0066 -5.2509 -9.0654
26 6 -2.6515 -4.3016 -8.1763
27 8 -2.1246 -4.8987 -7.0956
28 7 -1.1268 -6.9745 -5.1492
29 6 2.0327 -4.3899 -1.3380
30 1 -0.4850 0.8400 -0.0004
31 1 0.3556 -2.3880 0.0068
32 1 1.8650 -5.6444 0.9662
33 1 0.4652 -4.5295 1.2770
34 1 1.6474 -6.9872 -1.2400
35 1 0.0307 -7.0759 -0.5006
36 1 -0.2202 -5.8852 -3.0494
37 1 -0.6946 -10.1845 -4.6040
38 1 -2.8172 -7.4673 -8.9442
39 1 -3.4581 -5.0878 -10.0328
40 1 -2.7711 -3.2367 -8.3113
41 1 1.8840 -3.7280 -2.1912
42 1 2.8652 -5.0797 -1.4763
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001086461373.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:55
Heat of formation + Delta-G solvation = 36.541112 kcal
Electronic energy + Delta-G solvation = -26295.439984 eV
Core-core repulsion = 22369.264428 eV
Total energy + Delta-G solvation = -3926.175557 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 347.109 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-43.54980 -41.62518 -40.30648 -39.44184 -36.09637 -34.99724 -34.19264 -32.88850
-32.09491 -30.05543 -29.21050 -26.68776 -26.46745 -25.64176 -24.27481 -22.97041
-22.86810 -21.70727 -20.73953 -20.01200 -19.61945 -19.32161 -18.49919 -17.87620
-17.27121 -16.98704 -16.77369 -16.66086 -16.37995 -15.90929 -15.75339 -15.33702
-15.07791 -14.70930 -14.64940 -14.49069 -13.98457 -13.87374 -13.77331 -13.47794
-13.31231 -13.12015 -12.96640 -12.93942 -12.66979 -12.14914 -12.06815 -11.70978
-11.52229 -11.33019 -11.32887 -11.15417 -10.95803 -10.90060 -10.81678 -10.48667
-10.14521 -9.11893 -9.01719 -7.96405 -5.25171 -0.95407 -0.18485 0.28386
0.32083 1.15904 1.46660 1.47317 1.57561 1.68496 2.04214 2.12929
2.21846 2.54650 2.72966 3.36000 3.56212 3.68686 3.74416 3.81461
3.96308 4.00540 4.06659 4.11600 4.13239 4.29017 4.37044 4.54633
4.69037 4.71750 4.72439 4.89775 4.91315 4.95436 4.99639 5.08039
5.19820 5.31339 5.42428 5.47682 5.51238 5.63403 5.96015 6.18687
6.27129 6.45363 6.98271 7.31747 8.08629 8.31014 9.27228
Molecular weight = 347.11amu
Principal moments of inertia in cm(-1)
A = 0.009583 B = 0.002491 C = 0.002018
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2921.043122 B =11235.685183 C =13874.553071
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.970 5.970
2 C -0.077 4.077
3 Si 0.974 3.026
4 H -0.266 1.266
5 H -0.294 1.294
6 H -0.293 1.293
7 C -0.241 4.241
8 H 0.077 0.923
9 N -0.721 5.721
10 C 0.145 3.855
11 H 0.063 0.937
12 C -0.129 4.129
13 C -0.105 4.105
14 H 0.075 0.925
15 C 0.139 3.861
16 N -0.705 5.705
17 C 0.587 3.413
18 O -0.567 6.567
19 C -0.012 4.012
20 C -0.221 4.221
21 S 0.333 5.667
22 C 0.082 3.918
23 C 0.006 3.994
24 C -0.152 4.152
25 C -0.215 4.215
26 C -0.019 4.019
27 O -0.185 6.185
28 N -0.461 5.461
29 C -0.155 4.155
30 H 0.251 0.749
31 H 0.373 0.627
32 H 0.111 0.889
33 H 0.059 0.941
34 H 0.076 0.924
35 H 0.071 0.929
36 H 0.411 0.589
37 H 0.211 0.789
38 H 0.184 0.816
39 H 0.188 0.812
40 H 0.237 0.763
41 H 0.042 0.958
42 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.623 -20.886 -20.986 30.340
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.620 5.620
2 C -0.269 4.269
3 Si 0.803 3.197
4 H -0.190 1.190
5 H -0.221 1.221
6 H -0.220 1.220
7 C -0.373 4.373
8 H 0.095 0.905
9 N -0.359 5.359
10 C 0.035 3.965
11 H 0.081 0.919
12 C -0.168 4.168
13 C -0.124 4.124
14 H 0.093 0.907
15 C 0.016 3.984
16 N -0.354 5.354
17 C 0.371 3.629
18 O -0.447 6.447
19 C -0.148 4.148
20 C -0.364 4.364
21 S 0.591 5.409
22 C -0.192 4.192
23 C -0.047 4.047
24 C -0.175 4.175
25 C -0.234 4.234
26 C -0.089 4.089
27 O -0.081 6.081
28 N -0.177 5.177
29 C -0.196 4.196
30 H 0.060 0.940
31 H 0.205 0.795
32 H 0.129 0.871
33 H 0.078 0.922
34 H 0.094 0.906
35 H 0.089 0.911
36 H 0.247 0.753
37 H 0.228 0.772
38 H 0.201 0.799
39 H 0.205 0.795
40 H 0.253 0.747
41 H 0.061 0.939
42 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -6.356 -21.457 -20.810 30.559
hybrid contribution 0.135 1.822 0.817 2.002
sum -6.221 -19.635 -19.992 28.704
Atomic orbital electron populations
1.69824 1.06630 1.26014 1.59575 1.25582 0.96410 1.01155 1.03754
0.85065 0.78259 0.79759 0.76634 1.18991 1.22086 1.21999 1.19712
0.91533 0.85151 1.40927 0.90502 1.42335 1.05316 1.00657 1.87597
1.21375 0.95182 0.84942 0.94953 0.91930 1.23314 1.00000 0.98657
0.94855 1.22547 0.98238 0.93614 0.98033 0.90684 1.21452 0.98567
0.95919 0.82501 1.45951 1.61492 1.08309 1.19623 1.17384 0.77949
0.83496 0.84028 1.90773 1.53245 1.37687 1.62969 1.19996 1.08128
0.88752 0.97944 1.27040 1.04175 1.04075 1.01123 1.83230 1.50964
0.96618 1.10042 1.24721 1.03947 0.96929 0.93611 1.19198 1.09305
0.80676 0.95511 1.22241 1.01074 1.01873 0.92291 1.22174 1.07039
0.90875 1.03270 1.25191 0.98193 1.01131 0.84399 1.84206 1.64128
1.18644 1.41120 1.67139 1.12380 1.33008 1.05153 1.23782 0.97182
0.99296 0.99332 0.94018 0.79461 0.87119 0.92181 0.90570 0.91062
0.75291 0.77194 0.79872 0.79506 0.74678 0.93941 0.88863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16
2 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16
3 Si 0.97 46.69 29.55 68.60 2.03 48.71 16
4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16
5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16
6 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16
7 C -0.24 -13.61 9.97 84.03 0.84 -12.77 16
8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16
9 N -0.72 -36.98 5.31 -320.44 -1.70 -38.68 16
10 C 0.15 5.79 4.55 45.52 0.21 5.99 16
11 H 0.06 2.46 8.11 -2.39 -0.02 2.44 16
12 C -0.13 -4.12 7.38 31.12 0.23 -3.89 16
13 C -0.11 -3.34 3.65 -10.18 -0.04 -3.38 16
14 H 0.07 2.69 8.14 -2.39 -0.02 2.68 16
15 C 0.14 3.91 5.51 86.38 0.48 4.39 16
16 N -0.70 -20.86 5.55 -466.48 -2.59 -23.45 16
17 C 0.59 17.78 7.79 86.63 0.68 18.45 16
18 O -0.57 -19.18 16.65 -4.13 -0.07 -19.25 16
19 C -0.01 -0.31 6.64 40.70 0.27 -0.04 16
20 C -0.22 -4.08 10.56 67.11 0.71 -3.37 16
21 S 0.33 4.08 22.93 -56.49 -1.30 2.79 16
22 C 0.08 1.77 7.46 87.29 0.65 2.42 16
23 C 0.01 0.12 7.24 24.14 0.17 0.30 16
24 C -0.15 -2.01 10.63 22.42 0.24 -1.77 16
25 C -0.21 -2.44 10.88 22.11 0.24 -2.20 16
26 C -0.02 -0.29 12.08 67.04 0.81 0.52 16
27 O -0.19 -4.42 10.67 -6.54 -0.07 -4.49 16
28 N -0.46 -12.59 10.08 -180.09 -1.82 -14.41 16
29 C -0.16 -5.40 7.45 31.21 0.23 -5.16 16
30 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16
31 H 0.37 20.58 7.90 -92.71 -0.73 19.85 16
32 H 0.11 2.84 8.10 -2.39 -0.02 2.82 16
33 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16
34 H 0.08 2.08 7.85 -2.39 -0.02 2.06 16
35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
36 H 0.41 12.49 7.95 -92.71 -0.74 11.75 16
37 H 0.21 3.11 7.99 -2.91 -0.02 3.08 16
38 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16
39 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16
40 H 0.24 1.77 8.06 -2.91 -0.02 1.74 16
41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16
42 H 0.09 2.77 7.90 -2.39 -0.02 2.75 16
Total: -1.00 -76.35 381.09 0.56 -75.79
By element:
Atomic # 1 Polarization: 37.73 SS G_CDS: -0.39 Total: 37.34 kcal
Atomic # 6 Polarization: -10.69 SS G_CDS: 6.18 Total: -4.51 kcal
Atomic # 7 Polarization: -130.56 SS G_CDS: -5.82 Total: -136.39 kcal
Atomic # 8 Polarization: -23.59 SS G_CDS: -0.14 Total: -23.73 kcal
Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal
Atomic # 16 Polarization: 4.08 SS G_CDS: -1.30 Total: 2.79 kcal
Total: -76.35 0.56 -75.79 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086461373.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.329 kcal
(2) G-P(sol) polarization free energy of solvation -76.349 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.980 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds