Wall clock time and date at job start Wed Apr 1 2020 04:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99765 * 2 1 4 4 H 1.48502 * 109.46725 * 269.99851 * 3 2 1 5 5 H 1.48507 * 109.47078 * 29.99325 * 3 2 1 6 6 H 1.48496 * 109.47040 * 149.99623 * 3 2 1 7 7 C 1.38808 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99643 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99733 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.85136 * 336.19650 * 10 9 7 12 12 C 1.53779 * 113.61484 * 107.50045 * 10 9 7 13 13 C 1.53785 * 87.08093 * 89.11287 * 12 10 9 14 14 H 1.09002 * 113.61570 * 270.88522 * 13 12 10 15 15 C 1.52995 * 113.69093 * 139.99088 * 13 12 10 16 16 N 1.46500 * 109.47108 * 85.93603 * 15 13 12 17 17 C 1.34783 * 120.00119 * 179.97438 * 16 15 13 18 18 O 1.21731 * 119.99988 * 0.02562 * 17 16 15 19 19 C 1.46419 * 120.00100 * 179.97438 * 17 16 15 20 20 C 1.36815 * 125.99894 * 179.71826 * 19 17 16 21 21 N 1.30354 * 115.31097 * 179.77256 * 20 19 17 22 22 C 1.30933 * 117.31800 * 0.53926 * 21 20 19 23 23 C 1.46862 * 125.28758 * 179.70188 * 22 21 20 24 24 C 1.36429 * 125.97586 * 0.02562 * 23 22 21 25 25 C 1.40614 * 106.71899 * 180.02562 * 24 23 22 26 26 C 1.34954 * 107.08863 * 359.97438 * 25 24 23 27 27 O 1.34166 * 108.74475 * 359.73957 * 26 25 24 28 28 S 1.76118 * 109.42172 * 359.70333 * 22 21 20 29 29 C 1.53781 * 87.08241 * 25.43228 * 13 12 10 30 30 H 0.97001 * 120.00636 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00314 * 359.97438 * 9 7 2 32 32 H 1.09003 * 113.61775 * 334.57164 * 12 10 9 33 33 H 1.08996 * 113.61960 * 203.65890 * 12 10 9 34 34 H 1.09005 * 109.47501 * 205.93599 * 15 13 12 35 35 H 1.09004 * 109.47494 * 325.93611 * 15 13 12 36 36 H 0.96997 * 120.00462 * 0.02562 * 16 15 13 37 37 H 1.07999 * 122.34280 * 359.97438 * 20 19 17 38 38 H 1.08003 * 126.63914 * 359.97438 * 24 23 22 39 39 H 1.07991 * 126.45894 * 180.02562 * 25 24 23 40 40 H 1.07995 * 125.62206 * 180.02562 * 26 25 24 41 41 H 1.09005 * 113.61302 * 89.11252 * 29 13 12 42 42 H 1.08996 * 113.61527 * 219.93415 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 1 3.0661 -3.5639 -0.4030 12 6 1.9984 -4.4014 1.3458 13 6 0.7201 -5.0787 0.8239 14 1 -0.1908 -4.5235 1.0479 15 6 0.6171 -6.5610 1.1883 16 7 0.0178 -6.6965 2.5182 17 6 -0.1729 -7.9202 3.0500 18 8 0.1533 -8.9129 2.4255 19 6 -0.7714 -8.0556 4.3794 20 6 -1.0247 -9.2315 5.0314 21 7 -1.5605 -9.1091 6.2134 22 6 -1.8054 -7.8955 6.6395 23 6 -2.4086 -7.5568 7.9350 24 6 -2.8052 -8.4453 8.8912 25 6 -3.3226 -7.6882 9.9572 26 6 -3.2190 -6.3888 9.6078 27 8 -2.6616 -6.3131 8.3897 28 16 -1.2992 -6.7326 5.4176 29 6 1.2608 -4.8290 -0.5939 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 1.8278 -3.7469 2.2005 33 1 2.8271 -5.0926 1.4994 34 1 -0.0061 -7.0731 0.4551 35 1 1.6129 -7.0045 1.1917 36 1 -0.2426 -5.9056 3.0158 37 1 -0.7937 -10.1935 4.5984 38 1 -2.7359 -9.5219 8.8392 39 1 -3.7260 -8.0738 10.8818 40 1 -3.5290 -5.5486 10.2112 41 1 1.8880 -5.6370 -0.9706 42 1 0.4947 -4.5210 -1.3054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086539240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:00 Heat of formation + Delta-G solvation = 61.868613 kcal Electronic energy + Delta-G solvation = -25879.705610 eV Core-core repulsion = 21954.628336 eV Total energy + Delta-G solvation = -3925.077274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.07382 -40.32868 -39.39103 -38.43912 -34.80081 -33.65715 -33.27366 -32.16364 -30.38600 -29.56005 -27.47462 -25.95486 -25.10466 -23.82893 -22.85592 -22.05438 -21.89928 -21.42108 -19.87737 -19.30830 -18.31017 -17.65901 -17.36985 -16.83870 -16.71153 -16.17492 -15.67256 -15.39376 -14.97634 -14.71404 -14.57396 -14.27454 -14.10608 -13.75138 -13.43968 -13.37421 -13.28842 -13.05417 -12.93087 -12.33864 -11.98288 -11.92305 -11.47146 -11.08184 -10.88324 -10.61309 -10.58666 -10.51274 -10.26139 -10.19558 -10.19103 -9.91619 -9.82597 -9.72918 -9.54924 -9.16568 -8.92427 -8.48743 -7.03956 -5.84100 -3.13322 -0.54839 0.62600 1.09986 1.16205 1.95374 2.04207 2.41271 2.94009 2.95321 3.39496 3.44988 3.46406 3.82073 4.32403 4.45509 4.52574 4.54803 4.57865 4.81562 4.98380 5.01986 5.17700 5.19750 5.33878 5.41561 5.45557 5.55210 5.62590 5.64826 5.79677 5.89027 5.89626 6.03671 6.16416 6.23968 6.32809 6.43515 6.53354 6.69644 6.83954 6.99433 7.07072 7.27320 7.65866 7.91821 8.34968 9.45752 10.02893 10.37097 11.38276 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.002154 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.303659 B =12997.916980 C =15204.131034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.169 4.169 13 C -0.122 4.122 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.716 5.716 17 C 0.594 3.406 18 O -0.528 6.528 19 C -0.285 4.285 20 C 0.125 3.875 21 N -0.458 5.458 22 C 0.146 3.854 23 C 0.022 3.978 24 C -0.124 4.124 25 C -0.220 4.220 26 C -0.004 4.004 27 O -0.165 6.165 28 S 0.177 5.823 29 C -0.147 4.147 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.400 0.600 37 H 0.195 0.805 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.214 0.786 41 H 0.078 0.922 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 -17.672 18.134 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.210 4.210 13 C -0.141 4.141 14 H 0.112 0.888 15 C 0.008 3.992 16 N -0.366 5.366 17 C 0.378 3.622 18 O -0.406 6.406 19 C -0.410 4.410 20 C -0.035 4.035 21 N -0.173 5.173 22 C -0.124 4.124 23 C -0.031 4.031 24 C -0.148 4.148 25 C -0.239 4.239 26 C -0.075 4.075 27 O -0.061 6.061 28 S 0.437 5.563 29 C -0.186 4.186 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.211 0.789 38 H 0.180 0.820 39 H 0.176 0.824 40 H 0.231 0.769 41 H 0.096 0.904 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.266 -17.169 17.663 25.417 hybrid contribution 0.028 0.421 0.161 0.452 sum -6.238 -16.748 17.824 25.241 Atomic orbital electron populations 1.69656 1.05138 1.25819 1.57437 1.24766 0.95546 0.97808 1.02751 0.86171 0.78665 0.83663 0.77572 1.21640 1.21746 1.20697 1.19289 0.91131 0.83953 1.43002 0.90973 1.42170 1.05675 0.99432 1.87122 1.21053 0.95165 0.85594 0.92666 0.91863 1.23906 0.95595 0.99668 1.01874 1.22740 0.99726 0.92689 0.98911 0.88836 1.21586 0.98230 0.97463 0.81883 1.46000 1.63123 1.07193 1.20318 1.16604 0.78382 0.84031 0.83164 1.90855 1.51407 1.37176 1.61193 1.26095 1.15357 0.97090 1.02414 1.22268 0.94312 0.99245 0.87645 1.66360 1.15789 1.20754 1.14375 1.24220 1.01713 0.91050 0.95370 1.18551 1.08318 0.82797 0.93416 1.21990 0.99709 1.01039 0.92076 1.21894 1.07285 0.92946 1.01756 1.24420 0.99129 0.99795 0.84116 1.84075 1.62306 1.28994 1.30683 1.85232 1.53155 1.09106 1.08828 1.23442 1.00503 0.99747 0.94928 0.93419 0.78116 0.91476 0.91311 0.91295 0.91053 0.76521 0.78857 0.82038 0.82364 0.76945 0.90362 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -17.05 5.31 -52.63 -0.28 -17.33 16 10 C 0.17 3.19 4.56 -67.11 -0.31 2.88 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.17 -2.74 7.43 -25.92 -0.19 -2.94 16 13 C -0.12 -1.77 3.63 -89.81 -0.33 -2.10 16 14 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 15 C 0.13 1.71 5.50 -4.04 -0.02 1.69 16 16 N -0.72 -8.99 5.55 -61.70 -0.34 -9.33 16 17 C 0.59 8.00 7.78 -12.96 -0.10 7.90 16 18 O -0.53 -8.53 16.86 5.16 0.09 -8.44 16 19 C -0.28 -3.32 6.50 -36.81 -0.24 -3.56 16 20 C 0.12 1.37 11.04 -18.69 -0.21 1.17 16 21 N -0.46 -5.11 10.47 -11.00 -0.12 -5.23 16 22 C 0.15 1.57 7.44 -14.45 -0.11 1.46 16 23 C 0.02 0.22 7.21 -36.75 -0.26 -0.05 16 24 C -0.12 -0.99 10.79 -39.34 -0.42 -1.41 16 25 C -0.22 -1.29 10.88 -39.85 -0.43 -1.72 16 26 C 0.00 -0.02 12.08 29.57 0.36 0.33 16 27 O -0.17 -1.48 10.67 4.65 0.05 -1.43 16 28 S 0.18 1.82 22.52 -107.50 -2.42 -0.61 16 29 C -0.15 -2.27 7.39 -25.92 -0.19 -2.46 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 31 H 0.38 9.84 7.90 -40.82 -0.32 9.52 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 36 H 0.40 4.59 7.64 -40.82 -0.31 4.28 16 37 H 0.19 1.83 8.05 -52.49 -0.42 1.41 16 38 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 39 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.21 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.08 1.05 8.10 -51.93 -0.42 0.62 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -32.48 381.49 -9.50 -41.98 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.22 Total: 10.48 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.70 Total: -5.99 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.01 Total: -58.69 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.14 Total: -9.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.42 Total: -0.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.48 -9.50 -41.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086539240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.850 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds