Wall clock time and date at job start Wed Apr 1 2020 04:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99765 * 2 1 4 4 H 1.48502 * 109.46725 * 269.99851 * 3 2 1 5 5 H 1.48507 * 109.47078 * 29.99325 * 3 2 1 6 6 H 1.48496 * 109.47040 * 149.99623 * 3 2 1 7 7 C 1.38808 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99643 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99733 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.85136 * 336.19650 * 10 9 7 12 12 C 1.53779 * 113.61484 * 107.50045 * 10 9 7 13 13 C 1.53785 * 87.08093 * 89.11287 * 12 10 9 14 14 H 1.09002 * 113.61570 * 270.88522 * 13 12 10 15 15 C 1.52995 * 113.69093 * 139.99088 * 13 12 10 16 16 N 1.46500 * 109.47108 * 85.93603 * 15 13 12 17 17 C 1.34783 * 120.00119 * 179.97438 * 16 15 13 18 18 O 1.21731 * 119.99988 * 0.02562 * 17 16 15 19 19 C 1.46419 * 120.00100 * 179.97438 * 17 16 15 20 20 C 1.36815 * 125.99894 * 179.71826 * 19 17 16 21 21 N 1.30354 * 115.31097 * 179.77256 * 20 19 17 22 22 C 1.30933 * 117.31800 * 0.53926 * 21 20 19 23 23 C 1.46862 * 125.28758 * 179.70188 * 22 21 20 24 24 C 1.36429 * 125.97586 * 0.02562 * 23 22 21 25 25 C 1.40614 * 106.71899 * 180.02562 * 24 23 22 26 26 C 1.34954 * 107.08863 * 359.97438 * 25 24 23 27 27 O 1.34166 * 108.74475 * 359.73957 * 26 25 24 28 28 S 1.76118 * 109.42172 * 359.70333 * 22 21 20 29 29 C 1.53781 * 87.08241 * 25.43228 * 13 12 10 30 30 H 0.97001 * 120.00636 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00314 * 359.97438 * 9 7 2 32 32 H 1.09003 * 113.61775 * 334.57164 * 12 10 9 33 33 H 1.08996 * 113.61960 * 203.65890 * 12 10 9 34 34 H 1.09005 * 109.47501 * 205.93599 * 15 13 12 35 35 H 1.09004 * 109.47494 * 325.93611 * 15 13 12 36 36 H 0.96997 * 120.00462 * 0.02562 * 16 15 13 37 37 H 1.07999 * 122.34280 * 359.97438 * 20 19 17 38 38 H 1.08003 * 126.63914 * 359.97438 * 24 23 22 39 39 H 1.07991 * 126.45894 * 180.02562 * 25 24 23 40 40 H 1.07995 * 125.62206 * 180.02562 * 26 25 24 41 41 H 1.09005 * 113.61302 * 89.11252 * 29 13 12 42 42 H 1.08996 * 113.61527 * 219.93415 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6528 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 1 3.0661 -3.5639 -0.4030 12 6 1.9984 -4.4014 1.3458 13 6 0.7201 -5.0787 0.8239 14 1 -0.1908 -4.5235 1.0479 15 6 0.6171 -6.5610 1.1883 16 7 0.0178 -6.6965 2.5182 17 6 -0.1729 -7.9202 3.0500 18 8 0.1533 -8.9129 2.4255 19 6 -0.7714 -8.0556 4.3794 20 6 -1.0247 -9.2315 5.0314 21 7 -1.5605 -9.1091 6.2134 22 6 -1.8054 -7.8955 6.6395 23 6 -2.4086 -7.5568 7.9350 24 6 -2.8052 -8.4453 8.8912 25 6 -3.3226 -7.6882 9.9572 26 6 -3.2190 -6.3888 9.6078 27 8 -2.6616 -6.3131 8.3897 28 16 -1.2992 -6.7326 5.4176 29 6 1.2608 -4.8290 -0.5939 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 1.8278 -3.7469 2.2005 33 1 2.8271 -5.0926 1.4994 34 1 -0.0061 -7.0731 0.4551 35 1 1.6129 -7.0045 1.1917 36 1 -0.2426 -5.9056 3.0158 37 1 -0.7937 -10.1935 4.5984 38 1 -2.7359 -9.5219 8.8392 39 1 -3.7260 -8.0738 10.8818 40 1 -3.5290 -5.5486 10.2112 41 1 1.8880 -5.6370 -0.9706 42 1 0.4947 -4.5210 -1.3054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086539240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:59 Heat of formation + Delta-G solvation = 40.233658 kcal Electronic energy + Delta-G solvation = -25880.643772 eV Core-core repulsion = 21954.628336 eV Total energy + Delta-G solvation = -3926.015436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.63707 -41.29825 -40.43803 -39.69855 -36.10631 -35.03011 -34.23471 -32.92534 -32.09305 -30.51111 -28.64364 -26.79671 -26.44531 -25.67919 -23.81212 -23.03669 -22.55812 -22.40929 -20.71331 -20.24917 -19.61078 -19.28624 -18.34744 -17.80957 -17.33546 -17.10330 -16.76293 -16.63072 -16.23424 -15.85914 -15.71233 -15.38474 -15.35653 -15.00869 -14.70348 -14.57612 -14.00992 -13.91445 -13.77644 -13.54320 -13.30299 -12.96011 -12.92403 -12.76509 -12.67049 -12.16014 -12.07930 -11.70473 -11.50239 -11.38716 -11.29223 -11.08290 -10.94538 -10.88885 -10.80301 -10.57723 -10.23300 -9.15559 -9.00283 -7.95655 -5.23852 -1.35159 -0.18069 0.27582 0.48921 1.32008 1.45526 1.47863 1.48888 1.57303 1.69457 1.94270 2.00311 2.55483 3.18708 3.36931 3.57484 3.63104 3.71735 3.75606 3.87060 3.95434 4.00380 4.12281 4.14046 4.31042 4.38126 4.59003 4.70106 4.72344 4.86790 4.92540 4.92646 4.96164 4.98102 5.07878 5.16866 5.33105 5.42482 5.42761 5.52527 5.64939 5.88361 6.19498 6.28053 6.32623 6.89314 7.33136 8.10320 8.32470 9.27586 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.002154 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.303659 B =12997.916980 C =15204.131034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.143 3.857 11 H 0.062 0.938 12 C -0.155 4.155 13 C -0.106 4.106 14 H 0.080 0.920 15 C 0.139 3.861 16 N -0.713 5.713 17 C 0.598 3.402 18 O -0.559 6.559 19 C -0.308 4.308 20 C 0.132 3.868 21 N -0.474 5.474 22 C 0.152 3.848 23 C -0.018 4.018 24 C -0.117 4.117 25 C -0.226 4.226 26 C 0.010 3.990 27 O -0.183 6.183 28 S 0.186 5.814 29 C -0.132 4.132 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.405 0.595 37 H 0.205 0.795 38 H 0.167 0.833 39 H 0.187 0.813 40 H 0.254 0.746 41 H 0.108 0.892 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 -18.301 19.894 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.033 3.967 11 H 0.080 0.920 12 C -0.196 4.196 13 C -0.125 4.125 14 H 0.098 0.902 15 C 0.016 3.984 16 N -0.363 5.363 17 C 0.383 3.617 18 O -0.440 6.440 19 C -0.432 4.432 20 C -0.028 4.028 21 N -0.189 5.189 22 C -0.117 4.117 23 C -0.071 4.071 24 C -0.142 4.142 25 C -0.245 4.245 26 C -0.060 4.060 27 O -0.079 6.079 28 S 0.447 5.553 29 C -0.171 4.171 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.241 0.759 37 H 0.221 0.779 38 H 0.184 0.816 39 H 0.204 0.796 40 H 0.270 0.730 41 H 0.127 0.873 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.046 -17.825 19.420 27.045 hybrid contribution -0.073 0.563 -0.202 0.602 sum -6.118 -17.262 19.218 26.547 Atomic orbital electron populations 1.69805 1.06541 1.26057 1.59547 1.25544 0.96383 1.01036 1.03816 0.85163 0.77732 0.79625 0.77381 1.21511 1.22279 1.19464 1.19669 0.91530 0.85182 1.40955 0.90547 1.42303 1.05319 1.00562 1.87587 1.21392 0.95181 0.84930 0.95164 0.92034 1.23737 0.97287 0.99291 0.99237 1.22523 0.98413 0.93503 0.98020 0.90165 1.21458 0.98715 0.95967 0.82222 1.45955 1.62868 1.07320 1.20186 1.16731 0.77799 0.83628 0.83496 1.90830 1.52958 1.38008 1.62209 1.25863 1.17233 0.97890 1.02227 1.22482 0.93262 0.99590 0.87474 1.66419 1.16897 1.21012 1.14564 1.24547 1.00395 0.90999 0.95733 1.18623 1.10984 0.83668 0.93815 1.22300 0.98257 1.01408 0.92200 1.22265 1.07194 0.92765 1.02227 1.25365 0.96534 1.01259 0.82851 1.84076 1.62924 1.28790 1.32069 1.85116 1.53203 1.08539 1.08471 1.23338 0.99963 0.98694 0.95096 0.94030 0.79369 0.93440 0.88853 0.90946 0.90459 0.75943 0.77870 0.81552 0.79575 0.73026 0.87335 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 3 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.16 9.97 84.03 0.84 -12.32 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.72 -35.17 5.31 -320.43 -1.70 -36.87 16 10 C 0.14 5.36 4.56 45.52 0.21 5.57 16 11 H 0.06 2.30 8.10 -2.39 -0.02 2.28 16 12 C -0.16 -4.84 7.43 31.12 0.23 -4.61 16 13 C -0.11 -2.97 3.63 -10.27 -0.04 -3.00 16 14 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 15 C 0.14 3.43 5.50 86.38 0.48 3.91 16 16 N -0.71 -17.45 5.55 -467.30 -2.59 -20.05 16 17 C 0.60 15.93 7.78 86.37 0.67 16.60 16 18 O -0.56 -17.91 16.86 -4.45 -0.08 -17.98 16 19 C -0.31 -7.16 6.50 24.07 0.16 -7.00 16 20 C 0.13 2.90 11.04 84.58 0.93 3.83 16 21 N -0.47 -10.51 10.47 -188.73 -1.98 -12.48 16 22 C 0.15 3.24 7.44 87.09 0.65 3.89 16 23 C -0.02 -0.34 7.21 24.11 0.17 -0.17 16 24 C -0.12 -1.70 10.79 22.43 0.24 -1.46 16 25 C -0.23 -2.03 10.88 22.09 0.24 -1.79 16 26 C 0.01 0.08 12.08 67.06 0.81 0.89 16 27 O -0.18 -3.01 10.67 -6.28 -0.07 -3.08 16 28 S 0.19 3.81 22.52 -56.49 -1.27 2.54 16 29 C -0.13 -3.90 7.39 31.12 0.23 -3.67 16 30 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.37 19.61 7.90 -92.71 -0.73 18.87 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 2.48 7.92 -2.39 -0.02 2.46 16 34 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.08 1.87 7.88 -2.39 -0.02 1.85 16 36 H 0.41 9.14 7.64 -92.71 -0.71 8.44 16 37 H 0.20 3.85 8.05 -2.91 -0.02 3.82 16 38 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.19 0.54 8.06 -2.92 -0.02 0.52 16 40 H 0.25 -0.21 8.06 -2.91 -0.02 -0.23 16 41 H 0.11 2.59 8.10 -2.38 -0.02 2.57 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -70.87 381.49 0.55 -70.31 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.36 Total: 31.27 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 6.29 Total: -3.14 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -5.99 Total: -127.48 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.14 Total: -21.06 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.27 Total: 2.54 kcal Total: -70.87 0.55 -70.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086539240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.547 kcal (2) G-P(sol) polarization free energy of solvation -70.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds