Wall clock time and date at job start Wed Apr 1 2020 04:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48499 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47306 * 300.00656 * 3 2 1 6 6 H 1.48502 * 109.46787 * 60.00216 * 3 2 1 7 7 C 1.38810 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00248 * 197.36436 * 7 2 1 9 9 N 1.36945 * 119.99637 * 17.36594 * 7 2 1 10 10 C 1.46928 * 120.63111 * 27.67920 * 9 7 2 11 11 C 1.53191 * 108.77353 * 126.39008 * 10 9 7 12 12 C 1.53043 * 109.31243 * 54.63673 * 11 10 9 13 13 H 1.08996 * 109.44824 * 58.64341 * 12 11 10 14 14 N 1.46501 * 109.45850 * 178.61294 * 12 11 10 15 15 C 1.34783 * 119.99925 * 275.06599 * 14 12 11 16 16 O 1.21584 * 119.99879 * 359.97438 * 15 14 12 17 17 C 1.47555 * 119.99657 * 180.02562 * 15 14 12 18 18 C 1.40118 * 120.59605 * 359.97438 * 17 15 14 19 19 N 1.30611 * 121.17720 * 180.02562 * 18 17 15 20 20 C 1.34910 * 122.44497 * 359.97438 * 19 18 17 21 21 C 1.40621 * 128.45838 * 179.97438 * 20 19 18 22 22 C 1.32278 * 115.90558 * 180.02562 * 21 20 19 23 23 S 1.75502 * 110.84249 * 0.02562 * 22 21 20 24 24 C 1.40092 * 119.27315 * 359.97438 * 20 19 18 25 25 C 1.39373 * 119.74875 * 359.74869 * 24 20 19 26 26 C 1.53040 * 109.53651 * 298.63192 * 12 11 10 27 27 H 1.09001 * 109.52302 * 301.39677 * 26 12 11 28 28 O 1.42902 * 109.49884 * 181.31879 * 26 12 11 29 29 C 1.46929 * 120.62577 * 207.67770 * 9 7 2 30 30 H 0.97000 * 120.00650 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58585 * 6.60218 * 10 9 7 32 32 H 1.08998 * 109.69855 * 246.24843 * 10 9 7 33 33 H 1.09000 * 109.49750 * 294.68564 * 11 10 9 34 34 H 1.09001 * 109.49685 * 174.58630 * 11 10 9 35 35 H 0.97000 * 120.00039 * 95.06706 * 14 12 11 36 36 H 1.08007 * 119.40894 * 0.02562 * 18 17 15 37 37 H 1.07995 * 122.04208 * 0.02562 * 21 20 19 38 38 H 1.08005 * 124.58012 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.72673 * 180.27653 * 25 24 20 40 40 H 0.96696 * 113.99852 * 180.16193 * 28 26 12 41 41 H 1.09005 * 109.58370 * 113.82390 * 29 9 7 42 42 H 1.08994 * 109.58909 * 353.39446 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3551 10 6 0.2280 -2.3338 -1.2761 11 6 0.5013 -3.3030 -2.4306 12 6 0.8193 -4.6885 -1.8638 13 1 -0.0198 -5.0353 -1.2609 14 7 1.0487 -5.6258 -2.9661 15 6 0.0051 -6.2457 -3.5519 16 8 -1.1268 -6.0272 -3.1653 17 6 0.2363 -7.1901 -4.6618 18 6 1.5354 -7.4514 -5.1169 19 7 1.7531 -8.2849 -6.0987 20 6 0.7547 -8.9386 -6.7280 21 6 0.8429 -9.8554 -7.7906 22 6 -0.3047 -10.3519 -8.2223 23 16 -1.6520 -9.6958 -7.3087 24 6 -0.5684 -8.7232 -6.3211 25 6 -0.8352 -7.8446 -5.2726 26 6 2.0749 -4.6091 -0.9924 27 1 2.9091 -4.2389 -1.5883 28 8 2.3887 -5.9090 -0.4884 29 6 1.8195 -3.6548 0.1785 30 1 -0.4851 0.8400 0.0004 31 1 0.0986 -1.3252 -1.6686 32 1 -0.6755 -2.6394 -0.7486 33 1 1.3500 -2.9446 -3.0132 34 1 -0.3794 -3.3648 -3.0699 35 1 1.9518 -5.8004 -3.2743 36 1 2.3718 -6.9548 -4.6475 37 1 1.7896 -10.1369 -8.2274 38 1 -0.3998 -11.0641 -9.0286 39 1 -1.8488 -7.6702 -4.9431 40 1 3.1737 -5.9332 0.0756 41 1 1.0471 -4.0695 0.8262 42 1 2.7401 -3.5178 0.7457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090490777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:41 Heat of formation + Delta-G solvation = 0.683004 kcal Electronic energy + Delta-G solvation = -27399.012988 eV Core-core repulsion = 23471.282508 eV Total energy + Delta-G solvation = -3927.730481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96895 -39.57701 -37.97491 -36.00125 -35.44022 -34.47381 -32.81324 -32.08919 -30.66189 -29.63042 -28.50809 -25.74431 -24.89411 -23.96896 -22.57462 -22.12985 -21.61004 -20.47267 -19.68534 -18.62462 -17.44652 -17.15672 -16.84449 -16.57243 -16.39515 -15.70960 -15.22182 -14.93110 -14.59324 -14.38256 -14.36224 -13.96078 -13.78213 -13.47987 -13.26914 -13.16350 -12.96383 -12.77757 -12.34239 -12.19910 -12.00220 -11.61101 -11.50460 -11.14554 -10.91664 -10.79325 -10.72929 -10.36614 -10.29057 -10.25607 -9.96797 -9.78265 -9.71566 -9.47620 -9.15606 -8.82513 -8.49740 -8.41063 -6.80721 -5.87606 -3.31701 -0.16750 0.69417 0.96068 1.43048 1.56166 2.84625 3.15374 3.32664 3.40525 3.42326 3.57370 3.66114 4.24072 4.32747 4.42653 4.48018 4.54710 4.67234 4.77938 5.08672 5.25572 5.29234 5.29632 5.43541 5.46148 5.50152 5.59349 5.71847 5.72980 5.92394 6.04567 6.06753 6.23428 6.44409 6.46945 6.62615 6.73496 6.77414 7.25269 7.40481 7.55935 7.60068 7.70882 7.88129 8.25381 8.34748 9.10306 9.72753 10.28214 11.20997 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.002166 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.119164 B =12921.390480 C =13214.329254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.091 0.909 14 N -0.706 5.706 15 C 0.563 3.437 16 O -0.533 6.533 17 C -0.171 4.171 18 C 0.160 3.840 19 N -0.460 5.460 20 C 0.141 3.859 21 C -0.118 4.118 22 C -0.168 4.168 23 S 0.124 5.876 24 C -0.210 4.210 25 C 0.028 3.972 26 C 0.079 3.921 27 H 0.058 0.942 28 O -0.571 6.571 29 C 0.121 3.879 30 H 0.255 0.745 31 H 0.094 0.906 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.167 0.833 37 H 0.155 0.845 38 H 0.178 0.822 39 H 0.154 0.846 40 H 0.375 0.625 41 H 0.030 0.970 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -20.025 -14.887 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.188 4.188 12 C 0.059 3.941 13 H 0.109 0.891 14 N -0.356 5.356 15 C 0.348 3.652 16 O -0.411 6.411 17 C -0.179 4.179 18 C -0.013 4.013 19 N -0.168 5.168 20 C 0.007 3.993 21 C -0.149 4.149 22 C -0.305 4.305 23 S 0.387 5.613 24 C -0.327 4.327 25 C -0.002 4.002 26 C 0.018 3.982 27 H 0.076 0.924 28 O -0.376 6.376 29 C -0.007 4.007 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.184 0.816 37 H 0.172 0.828 38 H 0.196 0.804 39 H 0.172 0.828 40 H 0.221 0.779 41 H 0.047 0.953 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.350 -20.332 -15.368 25.489 hybrid contribution 2.030 1.307 0.499 2.465 sum 1.679 -19.025 -14.869 24.205 Atomic orbital electron populations 1.70038 1.05301 1.25680 1.53191 1.25074 0.95303 0.98568 1.00505 0.86214 0.79321 0.83780 0.77364 1.20211 1.21449 1.21640 1.19195 0.92730 0.84619 1.42287 0.91448 1.44061 1.35857 1.01040 1.50252 1.20835 0.88720 0.98446 0.87553 1.22621 1.01144 0.94121 1.00865 1.21083 0.97810 0.89199 0.85967 0.89139 1.46006 1.08888 1.44638 1.36061 1.17760 0.85359 0.80181 0.81906 1.90810 1.22263 1.64112 1.63887 1.21002 0.94986 1.01705 1.00242 1.22880 0.95227 0.92181 0.90967 1.67580 1.34129 1.07158 1.07982 1.19262 0.87771 0.96401 0.95843 1.19651 1.00129 0.98080 0.97008 1.25441 0.95432 1.04935 1.04660 1.84383 1.07323 1.40381 1.29169 1.23557 0.98629 1.06246 1.04293 1.21014 1.00455 0.89196 0.89527 1.22786 0.95893 0.83201 0.96289 0.92444 1.86479 1.50879 1.30136 1.70073 1.21528 0.98862 0.87397 0.92900 0.93455 0.88789 0.95740 0.92194 0.91830 0.76942 0.81584 0.82767 0.80441 0.82849 0.77879 0.95259 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.19 55.49 0.62 -24.92 16 2 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 3 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.26 -6.80 9.59 -15.06 -0.14 -6.94 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.08 3.00 -172.32 -0.52 -14.59 16 10 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 11 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 12 C 0.16 2.82 2.12 -67.89 -0.14 2.68 16 13 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 14 N -0.71 -10.13 4.87 -54.80 -0.27 -10.39 16 15 C 0.56 8.62 7.74 -12.46 -0.10 8.52 16 16 O -0.53 -10.08 16.07 5.29 0.09 -9.99 16 17 C -0.17 -2.16 5.89 -104.88 -0.62 -2.78 16 18 C 0.16 1.79 10.69 -17.37 -0.19 1.60 16 19 N -0.46 -5.50 10.39 -11.00 -0.11 -5.62 16 20 C 0.14 1.57 6.97 -84.92 -0.59 0.98 16 21 C -0.12 -0.97 10.16 -40.61 -0.41 -1.38 16 22 C -0.17 -1.07 11.08 28.81 0.32 -0.75 16 23 S 0.12 0.99 23.29 -107.50 -2.50 -1.52 16 24 C -0.21 -2.29 6.49 -38.46 -0.25 -2.54 16 25 C 0.03 0.34 9.73 -38.64 -0.38 -0.04 16 26 C 0.08 1.29 3.14 -26.61 -0.08 1.21 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -8.12 13.16 -35.23 -0.46 -8.59 16 29 C 0.12 2.38 6.14 -3.71 -0.02 2.36 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.40 4.53 6.66 -40.82 -0.27 4.26 16 36 H 0.17 1.41 6.41 -52.48 -0.34 1.07 16 37 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.18 0.54 8.06 -52.48 -0.42 0.12 16 39 H 0.15 1.78 7.72 -52.49 -0.41 1.37 16 40 H 0.37 3.77 9.08 45.56 0.41 4.18 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -32.84 362.91 -9.81 -42.64 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -4.23 Total: 7.51 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -2.86 Total: 3.96 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.28 Total: -55.52 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.38 Total: -18.58 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.84 -9.81 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090490777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.327 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds