Wall clock time and date at job start Wed Apr 1 2020 04:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48499 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47306 * 300.00656 * 3 2 1 6 6 H 1.48502 * 109.46787 * 60.00216 * 3 2 1 7 7 C 1.38810 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00248 * 197.36436 * 7 2 1 9 9 N 1.36945 * 119.99637 * 17.36594 * 7 2 1 10 10 C 1.46928 * 120.63111 * 27.67920 * 9 7 2 11 11 C 1.53191 * 108.77353 * 126.39008 * 10 9 7 12 12 C 1.53043 * 109.31243 * 54.63673 * 11 10 9 13 13 H 1.08996 * 109.44824 * 58.64341 * 12 11 10 14 14 N 1.46501 * 109.45850 * 178.61294 * 12 11 10 15 15 C 1.34783 * 119.99925 * 275.06599 * 14 12 11 16 16 O 1.21584 * 119.99879 * 359.97438 * 15 14 12 17 17 C 1.47555 * 119.99657 * 180.02562 * 15 14 12 18 18 C 1.40118 * 120.59605 * 359.97438 * 17 15 14 19 19 N 1.30611 * 121.17720 * 180.02562 * 18 17 15 20 20 C 1.34910 * 122.44497 * 359.97438 * 19 18 17 21 21 C 1.40621 * 128.45838 * 179.97438 * 20 19 18 22 22 C 1.32278 * 115.90558 * 180.02562 * 21 20 19 23 23 S 1.75502 * 110.84249 * 0.02562 * 22 21 20 24 24 C 1.40092 * 119.27315 * 359.97438 * 20 19 18 25 25 C 1.39373 * 119.74875 * 359.74869 * 24 20 19 26 26 C 1.53040 * 109.53651 * 298.63192 * 12 11 10 27 27 H 1.09001 * 109.52302 * 301.39677 * 26 12 11 28 28 O 1.42902 * 109.49884 * 181.31879 * 26 12 11 29 29 C 1.46929 * 120.62577 * 207.67770 * 9 7 2 30 30 H 0.97000 * 120.00650 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58585 * 6.60218 * 10 9 7 32 32 H 1.08998 * 109.69855 * 246.24843 * 10 9 7 33 33 H 1.09000 * 109.49750 * 294.68564 * 11 10 9 34 34 H 1.09001 * 109.49685 * 174.58630 * 11 10 9 35 35 H 0.97000 * 120.00039 * 95.06706 * 14 12 11 36 36 H 1.08007 * 119.40894 * 0.02562 * 18 17 15 37 37 H 1.07995 * 122.04208 * 0.02562 * 21 20 19 38 38 H 1.08005 * 124.58012 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.72673 * 180.27653 * 25 24 20 40 40 H 0.96696 * 113.99852 * 180.16193 * 28 26 12 41 41 H 1.09005 * 109.58370 * 113.82390 * 29 9 7 42 42 H 1.08994 * 109.58909 * 353.39446 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2786 9 7 1.3724 -2.3609 -0.3551 10 6 0.2280 -2.3338 -1.2761 11 6 0.5013 -3.3030 -2.4306 12 6 0.8193 -4.6885 -1.8638 13 1 -0.0198 -5.0353 -1.2609 14 7 1.0487 -5.6258 -2.9661 15 6 0.0051 -6.2457 -3.5519 16 8 -1.1268 -6.0272 -3.1653 17 6 0.2363 -7.1901 -4.6618 18 6 1.5354 -7.4514 -5.1169 19 7 1.7531 -8.2849 -6.0987 20 6 0.7547 -8.9386 -6.7280 21 6 0.8429 -9.8554 -7.7906 22 6 -0.3047 -10.3519 -8.2223 23 16 -1.6520 -9.6958 -7.3087 24 6 -0.5684 -8.7232 -6.3211 25 6 -0.8352 -7.8446 -5.2726 26 6 2.0749 -4.6091 -0.9924 27 1 2.9091 -4.2389 -1.5883 28 8 2.3887 -5.9090 -0.4884 29 6 1.8195 -3.6548 0.1785 30 1 -0.4851 0.8400 0.0004 31 1 0.0986 -1.3252 -1.6686 32 1 -0.6755 -2.6394 -0.7486 33 1 1.3500 -2.9446 -3.0132 34 1 -0.3794 -3.3648 -3.0699 35 1 1.9518 -5.8004 -3.2743 36 1 2.3718 -6.9548 -4.6475 37 1 1.7896 -10.1369 -8.2274 38 1 -0.3998 -11.0641 -9.0286 39 1 -1.8488 -7.6702 -4.9431 40 1 3.1737 -5.9332 0.0756 41 1 1.0471 -4.0695 0.8262 42 1 2.7401 -3.5178 0.7457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090490777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:40 Heat of formation + Delta-G solvation = -23.898730 kcal Electronic energy + Delta-G solvation = -27400.078932 eV Core-core repulsion = 23471.282508 eV Total energy + Delta-G solvation = -3928.796425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90670 -40.77087 -39.37799 -36.96963 -36.74538 -35.87348 -33.86380 -33.67460 -32.06986 -30.87829 -30.00778 -27.22340 -26.04454 -24.92737 -24.06201 -23.57487 -22.65897 -21.55837 -21.22228 -19.67113 -18.86745 -18.26005 -17.94690 -17.82333 -17.28603 -16.99653 -16.69420 -16.27659 -15.85491 -15.66250 -15.43937 -15.22486 -14.99937 -14.93618 -14.52791 -14.33441 -14.00198 -13.88393 -13.66059 -13.60982 -13.27875 -12.97179 -12.81045 -12.75514 -12.38038 -12.11655 -12.09714 -12.04929 -11.88441 -11.63778 -11.53375 -11.21256 -11.04327 -10.60625 -10.57716 -10.18532 -9.83833 -9.08652 -8.76722 -7.90084 -5.37145 -0.97780 -0.14478 0.27822 0.80985 0.83371 1.47920 1.50289 1.60491 1.81662 1.96210 2.49489 2.64383 2.92905 3.12924 3.27071 3.45945 3.52311 3.61424 3.65204 3.86377 3.91312 4.04410 4.06545 4.22727 4.37634 4.40616 4.53188 4.63299 4.65585 4.75094 4.84979 4.89995 4.94215 5.02394 5.04649 5.13239 5.25784 5.37165 5.40130 5.61259 5.66809 6.34265 6.41890 6.58952 6.90241 7.08880 7.10188 7.78507 8.30804 9.17419 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.002166 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.119164 B =12921.390480 C =13214.329254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.262 4.262 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.130 4.130 12 C 0.170 3.830 13 H 0.059 0.941 14 N -0.693 5.693 15 C 0.565 3.435 16 O -0.578 6.578 17 C -0.189 4.189 18 C 0.166 3.834 19 N -0.476 5.476 20 C 0.134 3.866 21 C -0.141 4.141 22 C -0.138 4.138 23 S 0.142 5.858 24 C -0.234 4.234 25 C 0.024 3.976 26 C 0.102 3.898 27 H 0.078 0.922 28 O -0.570 6.570 29 C 0.117 3.883 30 H 0.250 0.750 31 H 0.063 0.937 32 H -0.009 1.009 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.414 0.586 36 H 0.191 0.809 37 H 0.174 0.826 38 H 0.219 0.781 39 H 0.148 0.852 40 H 0.397 0.603 41 H 0.012 0.988 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -22.189 -16.950 28.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.392 4.392 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.053 3.947 11 C -0.170 4.170 12 C 0.065 3.935 13 H 0.077 0.923 14 N -0.343 5.343 15 C 0.352 3.648 16 O -0.458 6.458 17 C -0.197 4.197 18 C -0.006 4.006 19 N -0.184 5.184 20 C -0.001 4.001 21 C -0.170 4.170 22 C -0.275 4.275 23 S 0.406 5.594 24 C -0.351 4.351 25 C -0.006 4.006 26 C 0.041 3.959 27 H 0.096 0.904 28 O -0.378 6.378 29 C -0.010 4.010 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.010 0.990 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.252 0.748 36 H 0.208 0.792 37 H 0.191 0.809 38 H 0.236 0.764 39 H 0.166 0.834 40 H 0.247 0.753 41 H 0.030 0.970 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.097 -22.548 -17.436 28.580 hybrid contribution 1.218 1.796 1.095 2.431 sum 3.316 -20.752 -16.341 26.621 Atomic orbital electron populations 1.70206 1.06926 1.25958 1.55183 1.25876 0.95984 1.01838 1.01082 0.85179 0.78877 0.79625 0.76566 1.18440 1.21881 1.22262 1.19599 0.93248 0.85463 1.40845 0.90414 1.44273 1.35620 1.02145 1.50773 1.20549 0.87846 0.97755 0.88589 1.22337 1.01395 0.94302 0.98974 1.20709 0.97598 0.88463 0.86679 0.92279 1.45716 1.09790 1.43737 1.35083 1.18134 0.84665 0.79978 0.81986 1.90787 1.24024 1.65670 1.65365 1.20731 0.96159 1.02485 1.00363 1.23175 0.95075 0.91784 0.90604 1.67647 1.34549 1.07787 1.08463 1.19821 0.87654 0.96395 0.96203 1.19867 1.01723 0.98431 0.96992 1.25965 0.93854 1.03657 1.03985 1.84398 1.07343 1.39305 1.28379 1.23749 0.99804 1.06889 1.04670 1.21077 1.00198 0.89388 0.89912 1.22315 0.95671 0.83289 0.94638 0.90411 1.86455 1.52446 1.28283 1.70614 1.21705 0.98752 0.86198 0.94300 0.94068 0.91862 0.99041 0.90873 0.92394 0.74836 0.79190 0.80876 0.76428 0.83427 0.75281 0.97033 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.33 11.19 21.65 0.24 -55.09 16 2 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 3 Si 0.97 43.70 29.59 68.60 2.03 45.73 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 7 C -0.26 -13.74 9.59 84.03 0.81 -12.93 16 8 H 0.08 3.86 7.89 -2.91 -0.02 3.83 16 9 N -0.60 -29.26 3.00 -699.09 -2.09 -31.35 16 10 C 0.18 8.78 5.31 86.36 0.46 9.24 16 11 C -0.13 -5.05 5.65 30.67 0.17 -4.87 16 12 C 0.17 5.90 2.12 45.02 0.10 6.00 16 13 H 0.06 2.46 7.58 -2.39 -0.02 2.44 16 14 N -0.69 -19.28 4.87 -445.55 -2.17 -21.45 16 15 C 0.57 17.50 7.74 86.70 0.67 18.17 16 16 O -0.58 -22.83 16.07 -3.98 -0.06 -22.89 16 17 C -0.19 -4.76 5.89 -20.03 -0.12 -4.88 16 18 C 0.17 3.49 10.69 85.33 0.91 4.40 16 19 N -0.48 -10.63 10.39 -188.73 -1.96 -12.60 16 20 C 0.13 2.75 6.97 39.70 0.28 3.03 16 21 C -0.14 -1.90 10.16 21.79 0.22 -1.68 16 22 C -0.14 -1.25 11.08 66.76 0.74 -0.51 16 23 S 0.14 1.96 23.29 -56.49 -1.32 0.65 16 24 C -0.23 -4.89 6.49 22.99 0.15 -4.74 16 25 C 0.02 0.59 9.73 22.88 0.22 0.81 16 26 C 0.10 3.14 3.14 30.67 0.10 3.24 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 O -0.57 -14.74 13.16 -148.98 -1.96 -16.70 16 29 C 0.12 4.55 6.14 86.36 0.53 5.08 16 30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.06 3.48 6.04 -2.39 -0.01 3.47 16 32 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.41 8.53 6.66 -92.71 -0.62 7.92 16 36 H 0.19 2.78 6.41 -2.91 -0.02 2.76 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.22 0.15 8.06 -2.91 -0.02 0.13 16 39 H 0.15 3.62 7.72 -2.91 -0.02 3.60 16 40 H 0.40 6.59 9.08 -74.06 -0.67 5.92 16 41 H 0.01 0.49 8.14 -2.38 -0.02 0.48 16 42 H 0.08 2.72 7.93 -2.39 -0.02 2.71 16 Total: -1.00 -74.45 362.91 -1.84 -76.29 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.20 Total: 19.49 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 5.65 Total: 17.91 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -5.98 Total: -120.49 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -2.02 Total: -39.59 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.32 Total: 0.65 kcal Total: -74.45 -1.84 -76.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090490777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.393 kcal (2) G-P(sol) polarization free energy of solvation -74.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds