Wall clock time and date at job start Wed Apr 1 2020 04:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00166 * 2 1 4 4 H 1.48502 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47282 * 300.00203 * 3 2 1 6 6 H 1.48507 * 109.47075 * 59.99966 * 3 2 1 7 7 C 1.38808 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99940 * 197.37222 * 7 2 1 9 9 N 1.36932 * 120.00167 * 17.36614 * 7 2 1 10 10 C 1.46935 * 120.63072 * 207.67700 * 9 7 2 11 11 C 1.53197 * 108.77466 * 233.60715 * 10 9 7 12 12 C 1.53038 * 109.31642 * 305.36803 * 11 10 9 13 13 H 1.09001 * 109.45881 * 301.35053 * 12 11 10 14 14 N 1.46497 * 109.44960 * 181.37607 * 12 11 10 15 15 C 1.34776 * 119.99474 * 84.93928 * 14 12 11 16 16 O 1.21609 * 120.00328 * 359.97438 * 15 14 12 17 17 C 1.47370 * 119.99690 * 180.02562 * 15 14 12 18 18 C 1.38766 * 120.55284 * 359.72061 * 17 15 14 19 19 N 1.31898 * 121.12010 * 179.71081 * 18 17 15 20 20 C 1.31677 * 122.22087 * 0.58830 * 19 18 17 21 21 C 1.39294 * 121.13564 * 359.69431 * 20 19 18 22 22 S 1.75881 * 131.39523 * 180.02562 * 21 20 19 23 23 C 1.75550 * 91.52372 * 179.97438 * 22 21 20 24 24 C 1.32481 * 110.79464 * 359.97438 * 23 22 21 25 25 C 1.40009 * 115.78127 * 359.97438 * 24 23 22 26 26 C 1.53046 * 109.53692 * 61.36442 * 12 11 10 27 27 H 1.08998 * 109.49811 * 58.61600 * 26 12 11 28 28 O 1.42899 * 109.49624 * 178.68660 * 26 12 11 29 29 C 1.46924 * 120.63130 * 27.68315 * 9 7 2 30 30 H 0.97003 * 119.99574 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.58294 * 113.82680 * 10 9 7 32 32 H 1.08993 * 109.58791 * 353.40189 * 10 9 7 33 33 H 1.08996 * 109.49528 * 185.41424 * 11 10 9 34 34 H 1.09003 * 109.49156 * 65.31947 * 11 10 9 35 35 H 0.96994 * 120.00028 * 264.94179 * 14 12 11 36 36 H 1.07999 * 119.44028 * 0.02562 * 18 17 15 37 37 H 1.07998 * 119.43029 * 179.70763 * 20 19 18 38 38 H 1.08001 * 124.60512 * 179.97438 * 23 22 21 39 39 H 1.08000 * 122.10988 * 180.02562 * 24 23 22 40 40 H 0.96696 * 113.99955 * 180.02562 * 28 26 12 41 41 H 1.08998 * 109.58340 * 6.59652 * 29 9 7 42 42 H 1.09009 * 109.58373 * 246.17869 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2787 9 7 1.3724 -2.3608 -0.3550 10 6 1.8194 -3.6549 0.1785 11 6 2.0747 -4.6092 -0.9923 12 6 0.8192 -4.6885 -1.8639 13 1 -0.0200 -5.0355 -1.2610 14 7 1.0490 -5.6257 -2.9661 15 6 0.8488 -6.9456 -2.7811 16 8 0.4779 -7.3586 -1.6991 17 6 1.0804 -7.8885 -3.8897 18 6 1.4991 -7.4293 -5.1305 19 7 1.7152 -8.2638 -6.1288 20 6 1.5369 -9.5629 -6.0091 21 6 1.1128 -10.1239 -4.8067 22 16 0.7931 -11.7922 -4.3505 23 6 0.3542 -11.3115 -2.7202 24 6 0.4540 -9.9985 -2.5740 25 6 0.8737 -9.2899 -3.7062 26 6 0.5013 -3.3029 -2.4306 27 1 1.3498 -2.9449 -3.0137 28 8 -0.6533 -3.3839 -3.2687 29 6 0.2280 -2.3338 -1.2761 30 1 -0.4850 0.8401 -0.0004 31 1 1.0468 -4.0696 0.8261 32 1 2.7399 -3.5179 0.7458 33 1 2.3140 -5.6007 -0.6080 34 1 2.9086 -4.2386 -1.5885 35 1 1.3451 -5.2964 -3.8290 36 1 1.6555 -6.3712 -5.2797 37 1 1.7229 -10.2045 -6.8577 38 1 0.0448 -11.9934 -1.9419 39 1 0.2268 -9.5060 -1.6401 40 1 -0.9128 -2.5401 -3.6633 41 1 0.0987 -1.3251 -1.6685 42 1 -0.6742 -2.6407 -0.7471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090505708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:25 Heat of formation + Delta-G solvation = 0.875475 kcal Electronic energy + Delta-G solvation = -27817.367787 eV Core-core repulsion = 23889.645653 eV Total energy + Delta-G solvation = -3927.722135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06010 -39.42778 -37.83344 -36.62070 -35.31104 -34.42811 -32.63563 -31.60293 -30.62746 -29.40988 -28.86935 -25.61551 -24.86244 -24.34401 -22.52523 -21.90645 -21.31172 -20.64368 -19.67541 -18.53307 -17.62274 -17.02200 -16.67661 -16.58707 -16.20657 -15.71095 -15.22636 -14.90719 -14.66025 -14.36665 -14.24750 -14.09278 -13.83039 -13.64633 -13.30987 -13.00543 -12.71703 -12.54104 -12.31821 -12.25566 -12.03524 -11.70884 -11.31147 -11.22878 -10.88078 -10.81074 -10.47302 -10.45537 -10.22482 -10.18715 -10.04550 -9.78406 -9.56740 -9.39367 -9.38115 -8.86763 -8.57854 -8.20605 -6.82197 -5.90403 -3.33862 -0.04449 0.43533 1.06010 1.50268 2.03984 2.74352 3.16107 3.30333 3.39034 3.40961 3.59263 3.96235 4.18085 4.37871 4.39761 4.47244 4.57511 4.76405 4.96272 5.03054 5.23590 5.27470 5.35137 5.40998 5.54285 5.58651 5.82251 5.86320 5.94715 5.99319 6.03894 6.08856 6.16860 6.38409 6.41222 6.66077 6.74833 6.86420 7.07907 7.41080 7.44764 7.58404 7.69918 8.05349 8.24582 8.32632 9.07854 9.70637 10.26524 11.18055 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.002341 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.252816 B =11958.362689 C =12376.373647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.140 4.140 12 C 0.163 3.837 13 H 0.091 0.909 14 N -0.706 5.706 15 C 0.561 3.439 16 O -0.534 6.534 17 C -0.142 4.142 18 C 0.125 3.875 19 N -0.474 5.474 20 C 0.177 3.823 21 C -0.217 4.217 22 S 0.115 5.885 23 C -0.172 4.172 24 C -0.121 4.121 25 C 0.016 3.984 26 C 0.071 3.929 27 H 0.053 0.947 28 O -0.573 6.573 29 C 0.148 3.852 30 H 0.255 0.745 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.170 0.830 40 H 0.377 0.623 41 H 0.095 0.905 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -20.424 -11.536 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.059 3.941 13 H 0.109 0.891 14 N -0.355 5.355 15 C 0.347 3.653 16 O -0.412 6.412 17 C -0.149 4.149 18 C -0.028 4.028 19 N -0.183 5.183 20 C 0.009 3.991 21 C -0.334 4.334 22 S 0.377 5.623 23 C -0.308 4.308 24 C -0.150 4.150 25 C 0.000 4.000 26 C 0.010 3.990 27 H 0.071 0.929 28 O -0.378 6.378 29 C 0.021 3.979 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.231 0.769 36 H 0.182 0.818 37 H 0.183 0.817 38 H 0.193 0.807 39 H 0.187 0.813 40 H 0.224 0.776 41 H 0.113 0.887 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.834 -22.185 -12.034 25.305 hybrid contribution 0.121 2.650 0.960 2.821 sum 1.954 -19.535 -11.074 22.541 Atomic orbital electron populations 1.70041 1.05270 1.25619 1.53636 1.25080 0.95323 0.98582 1.00667 0.86212 0.79404 0.83734 0.77360 1.20173 1.21496 1.21621 1.19246 0.92880 0.84619 1.41715 0.91287 1.44027 1.35655 1.01796 1.49836 1.20942 0.98287 0.86293 0.92654 1.22431 0.96576 1.00339 0.98664 1.21062 0.98847 0.86964 0.87202 0.89143 1.46043 1.67751 1.05923 1.15805 1.17785 0.77977 0.82331 0.87193 1.90727 1.46639 1.77708 1.26137 1.20942 1.05106 0.92669 0.96199 1.22772 0.92872 0.99953 0.87246 1.67743 1.15605 1.03195 1.31754 1.22383 0.91341 0.91296 0.94066 1.23870 1.10861 0.98982 0.99719 1.84143 1.69369 1.02682 1.06132 1.25602 1.05797 0.99225 1.00168 1.20334 1.01143 0.93022 1.00525 1.18275 0.96493 0.92442 0.92823 1.22989 0.87157 0.95287 0.93517 0.92923 1.86412 1.48290 1.36699 1.66377 1.21424 0.89826 0.98274 0.88367 0.93512 0.95793 0.92040 0.91735 0.91901 0.76884 0.81842 0.81748 0.80710 0.81310 0.77625 0.88718 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 11.19 55.49 0.62 -24.54 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 20.85 29.59 -169.99 -5.03 15.83 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.26 -6.70 9.58 -15.06 -0.14 -6.84 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -14.09 3.00 -172.31 -0.52 -14.61 16 10 C 0.15 2.98 6.52 -3.70 -0.02 2.95 16 11 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 12 C 0.16 2.83 2.12 -67.89 -0.14 2.69 16 13 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 14 N -0.71 -10.27 4.87 -54.86 -0.27 -10.53 16 15 C 0.56 8.60 7.73 -12.54 -0.10 8.50 16 16 O -0.53 -9.63 14.13 5.27 0.07 -9.55 16 17 C -0.14 -1.86 5.94 -104.21 -0.62 -2.48 16 18 C 0.12 1.41 10.67 -17.33 -0.18 1.23 16 19 N -0.47 -5.30 10.32 -12.87 -0.13 -5.44 16 20 C 0.18 1.70 11.20 -17.23 -0.19 1.51 16 21 C -0.22 -2.27 6.52 -38.48 -0.25 -2.52 16 22 S 0.11 0.92 23.29 -107.50 -2.50 -1.58 16 23 C -0.17 -1.51 11.10 28.82 0.32 -1.19 16 24 C -0.12 -1.42 9.43 -40.83 -0.39 -1.81 16 25 C 0.02 0.21 5.88 -106.74 -0.63 -0.42 16 26 C 0.07 1.28 3.14 -26.61 -0.08 1.20 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 O -0.57 -9.43 13.16 -35.23 -0.46 -9.89 16 29 C 0.15 3.33 4.94 -3.71 -0.02 3.32 16 30 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.40 4.78 6.64 -40.82 -0.27 4.51 16 36 H 0.16 1.48 6.37 -52.49 -0.33 1.14 16 37 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.18 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.17 2.21 6.28 -52.49 -0.33 1.88 16 40 H 0.38 4.95 9.08 45.56 0.41 5.36 16 41 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 42 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -31.77 359.14 -9.64 -41.41 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.15 Total: 9.97 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -2.69 Total: 3.52 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.30 Total: -55.11 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.39 Total: -19.45 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.50 Total: -1.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.77 -9.64 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090505708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.286 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds