Wall clock time and date at job start Wed Apr 1 2020 04:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00166 * 2 1 4 4 H 1.48502 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47282 * 300.00203 * 3 2 1 6 6 H 1.48507 * 109.47075 * 59.99966 * 3 2 1 7 7 C 1.38808 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99940 * 197.37222 * 7 2 1 9 9 N 1.36932 * 120.00167 * 17.36614 * 7 2 1 10 10 C 1.46935 * 120.63072 * 207.67700 * 9 7 2 11 11 C 1.53197 * 108.77466 * 233.60715 * 10 9 7 12 12 C 1.53038 * 109.31642 * 305.36803 * 11 10 9 13 13 H 1.09001 * 109.45881 * 301.35053 * 12 11 10 14 14 N 1.46497 * 109.44960 * 181.37607 * 12 11 10 15 15 C 1.34776 * 119.99474 * 84.93928 * 14 12 11 16 16 O 1.21609 * 120.00328 * 359.97438 * 15 14 12 17 17 C 1.47370 * 119.99690 * 180.02562 * 15 14 12 18 18 C 1.38766 * 120.55284 * 359.72061 * 17 15 14 19 19 N 1.31898 * 121.12010 * 179.71081 * 18 17 15 20 20 C 1.31677 * 122.22087 * 0.58830 * 19 18 17 21 21 C 1.39294 * 121.13564 * 359.69431 * 20 19 18 22 22 S 1.75881 * 131.39523 * 180.02562 * 21 20 19 23 23 C 1.75550 * 91.52372 * 179.97438 * 22 21 20 24 24 C 1.32481 * 110.79464 * 359.97438 * 23 22 21 25 25 C 1.40009 * 115.78127 * 359.97438 * 24 23 22 26 26 C 1.53046 * 109.53692 * 61.36442 * 12 11 10 27 27 H 1.08998 * 109.49811 * 58.61600 * 26 12 11 28 28 O 1.42899 * 109.49624 * 178.68660 * 26 12 11 29 29 C 1.46924 * 120.63130 * 27.68315 * 9 7 2 30 30 H 0.97003 * 119.99574 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.58294 * 113.82680 * 10 9 7 32 32 H 1.08993 * 109.58791 * 353.40189 * 10 9 7 33 33 H 1.08996 * 109.49528 * 185.41424 * 11 10 9 34 34 H 1.09003 * 109.49156 * 65.31947 * 11 10 9 35 35 H 0.96994 * 120.00028 * 264.94179 * 14 12 11 36 36 H 1.07999 * 119.44028 * 0.02562 * 18 17 15 37 37 H 1.07998 * 119.43029 * 179.70763 * 20 19 18 38 38 H 1.08001 * 124.60512 * 179.97438 * 23 22 21 39 39 H 1.08000 * 122.10988 * 180.02562 * 24 23 22 40 40 H 0.96696 * 113.99955 * 180.02562 * 28 26 12 41 41 H 1.08998 * 109.58340 * 6.59652 * 29 9 7 42 42 H 1.09009 * 109.58373 * 246.17869 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2787 9 7 1.3724 -2.3608 -0.3550 10 6 1.8194 -3.6549 0.1785 11 6 2.0747 -4.6092 -0.9923 12 6 0.8192 -4.6885 -1.8639 13 1 -0.0200 -5.0355 -1.2610 14 7 1.0490 -5.6257 -2.9661 15 6 0.8488 -6.9456 -2.7811 16 8 0.4779 -7.3586 -1.6991 17 6 1.0804 -7.8885 -3.8897 18 6 1.4991 -7.4293 -5.1305 19 7 1.7152 -8.2638 -6.1288 20 6 1.5369 -9.5629 -6.0091 21 6 1.1128 -10.1239 -4.8067 22 16 0.7931 -11.7922 -4.3505 23 6 0.3542 -11.3115 -2.7202 24 6 0.4540 -9.9985 -2.5740 25 6 0.8737 -9.2899 -3.7062 26 6 0.5013 -3.3029 -2.4306 27 1 1.3498 -2.9449 -3.0137 28 8 -0.6533 -3.3839 -3.2687 29 6 0.2280 -2.3338 -1.2761 30 1 -0.4850 0.8401 -0.0004 31 1 1.0468 -4.0696 0.8261 32 1 2.7399 -3.5179 0.7458 33 1 2.3140 -5.6007 -0.6080 34 1 2.9086 -4.2386 -1.5885 35 1 1.3451 -5.2964 -3.8290 36 1 1.6555 -6.3712 -5.2797 37 1 1.7229 -10.2045 -6.8577 38 1 0.0448 -11.9934 -1.9419 39 1 0.2268 -9.5060 -1.6401 40 1 -0.9128 -2.5401 -3.6633 41 1 0.0987 -1.3251 -1.6685 42 1 -0.6742 -2.6407 -0.7471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090505708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:24 Heat of formation + Delta-G solvation = -22.359868 kcal Electronic energy + Delta-G solvation = -27818.375347 eV Core-core repulsion = 23889.645653 eV Total energy + Delta-G solvation = -3928.729695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98285 -40.65689 -39.26122 -37.43266 -36.90023 -35.83862 -34.16465 -32.85448 -31.40708 -31.03073 -30.46880 -27.22947 -25.74654 -25.45743 -24.09105 -23.46587 -22.19586 -21.77311 -21.21814 -19.61110 -18.79573 -18.49308 -18.10924 -17.56324 -17.28160 -16.90715 -16.61211 -16.28417 -15.74786 -15.56928 -15.33137 -15.31105 -15.11431 -15.00341 -14.89416 -14.41134 -13.87528 -13.76160 -13.55479 -13.37054 -13.32632 -13.10739 -13.06890 -12.69436 -12.52740 -12.11691 -12.00371 -11.99905 -11.88893 -11.54590 -11.25221 -11.03240 -10.97905 -10.64401 -10.61403 -10.20754 -10.09064 -8.92017 -8.77675 -7.91543 -5.38470 -0.88213 -0.36208 0.36299 0.76242 1.22310 1.47198 1.50220 1.60423 1.70218 1.98579 2.49189 2.67523 3.07934 3.19675 3.27480 3.41308 3.59508 3.62146 3.66792 3.88009 3.95083 4.04021 4.17410 4.28784 4.29887 4.39885 4.44119 4.49281 4.65943 4.79220 4.86635 4.91747 5.02813 5.04854 5.14740 5.18097 5.29836 5.32504 5.39994 5.55765 5.63762 6.32515 6.42973 6.65743 6.81620 7.09211 7.10154 7.76715 8.29551 9.15343 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.002341 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.252816 B =11958.362689 C =12376.373647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.296 1.296 7 C -0.264 4.264 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.142 3.858 11 C -0.123 4.123 12 C 0.172 3.828 13 H 0.059 0.941 14 N -0.696 5.696 15 C 0.562 3.438 16 O -0.569 6.569 17 C -0.170 4.170 18 C 0.133 3.867 19 N -0.491 5.491 20 C 0.189 3.811 21 C -0.237 4.237 22 S 0.183 5.817 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.002 4.002 26 C 0.092 3.908 27 H 0.069 0.931 28 O -0.574 6.574 29 C 0.157 3.843 30 H 0.252 0.748 31 H 0.009 0.991 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.411 0.589 36 H 0.182 0.818 37 H 0.202 0.798 38 H 0.204 0.796 39 H 0.145 0.855 40 H 0.393 0.607 41 H 0.072 0.928 42 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -22.412 -13.900 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.163 4.163 12 C 0.067 3.933 13 H 0.077 0.923 14 N -0.347 5.347 15 C 0.349 3.651 16 O -0.450 6.450 17 C -0.177 4.177 18 C -0.019 4.019 19 N -0.200 5.200 20 C 0.022 3.978 21 C -0.355 4.355 22 S 0.446 5.554 23 C -0.292 4.292 24 C -0.189 4.189 25 C -0.019 4.019 26 C 0.031 3.969 27 H 0.087 0.913 28 O -0.381 6.381 29 C 0.030 3.970 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.248 0.752 36 H 0.199 0.801 37 H 0.218 0.782 38 H 0.221 0.779 39 H 0.163 0.837 40 H 0.242 0.758 41 H 0.090 0.910 42 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 3.288 -24.191 -14.445 28.366 hybrid contribution -0.383 3.060 1.698 3.520 sum 2.905 -21.130 -12.747 24.848 Atomic orbital electron populations 1.70196 1.06708 1.26022 1.55132 1.25827 0.96023 1.01598 1.00939 0.85189 0.78693 0.79645 0.76775 1.18954 1.21326 1.22301 1.19576 0.93197 0.85568 1.41009 0.90948 1.44271 1.35687 1.02382 1.50575 1.21036 0.97893 0.85610 0.93840 1.22218 0.96904 0.99695 0.97524 1.20705 0.97725 0.87148 0.87741 0.92283 1.45778 1.67803 1.05447 1.15640 1.18165 0.76953 0.82506 0.87429 1.90710 1.48238 1.78266 1.27770 1.20746 1.08273 0.92629 0.96091 1.23013 0.91473 1.00922 0.86516 1.67846 1.16654 1.03976 1.31506 1.23019 0.88867 0.91231 0.94686 1.24153 1.11371 1.00481 0.99468 1.83926 1.67387 0.99975 1.04160 1.26036 1.02817 0.98608 1.01743 1.20227 1.04363 0.94287 1.00010 1.18497 0.96819 0.92707 0.93860 1.22565 0.88066 0.94305 0.91982 0.91321 1.86396 1.47793 1.38028 1.65839 1.21228 0.88336 0.98151 0.89308 0.93919 0.97256 0.91433 0.91064 0.90561 0.75181 0.80147 0.78171 0.77906 0.83706 0.75780 0.90968 0.98678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.65 11.19 21.65 0.24 -53.41 16 2 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 3 Si 0.97 43.17 29.59 68.60 2.03 45.20 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.26 -13.95 9.58 84.03 0.81 -13.15 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 9 N -0.60 -29.54 3.00 -699.06 -2.09 -31.64 16 10 C 0.14 5.96 6.52 86.36 0.56 6.52 16 11 C -0.12 -4.29 5.65 30.67 0.17 -4.12 16 12 C 0.17 6.04 2.12 45.02 0.10 6.14 16 13 H 0.06 2.48 7.58 -2.39 -0.02 2.46 16 14 N -0.70 -20.05 4.87 -445.73 -2.17 -22.22 16 15 C 0.56 17.53 7.73 86.65 0.67 18.19 16 16 O -0.57 -21.53 14.13 -4.06 -0.06 -21.59 16 17 C -0.17 -4.42 5.94 -19.60 -0.12 -4.54 16 18 C 0.13 2.84 10.67 84.81 0.90 3.74 16 19 N -0.49 -9.88 10.32 -194.64 -2.01 -11.89 16 20 C 0.19 3.10 11.20 84.97 0.95 4.05 16 21 C -0.24 -4.44 6.52 22.98 0.15 -4.29 16 22 S 0.18 2.34 23.29 -56.49 -1.32 1.03 16 23 C -0.16 -2.44 11.10 66.69 0.74 -1.70 16 24 C -0.16 -3.75 9.43 21.57 0.20 -3.55 16 25 C 0.00 -0.04 5.88 -21.24 -0.12 -0.17 16 26 C 0.09 3.30 3.14 30.67 0.10 3.39 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 O -0.57 -18.66 13.16 -148.98 -1.96 -20.62 16 29 C 0.16 7.30 4.94 86.36 0.43 7.73 16 30 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 31 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.41 9.35 6.64 -92.71 -0.62 8.73 16 36 H 0.18 2.94 6.37 -2.91 -0.02 2.93 16 37 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.20 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.15 4.07 6.28 -2.91 -0.02 4.05 16 40 H 0.39 10.04 9.08 -74.06 -0.67 9.37 16 41 H 0.07 3.68 6.04 -2.39 -0.01 3.67 16 42 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 Total: -1.00 -71.12 359.14 -1.57 -72.69 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.19 Total: 26.37 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 5.95 Total: 16.08 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -6.03 Total: -119.16 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -2.02 Total: -42.21 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.32 Total: 1.03 kcal Total: -71.12 -1.57 -72.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090505708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.334 kcal (2) G-P(sol) polarization free energy of solvation -71.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds