Wall clock time and date at job start Wed Apr 1 2020 04:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00302 * 2 1 4 4 H 1.48495 * 109.47485 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46905 * 299.99783 * 3 2 1 6 6 H 1.48497 * 109.47059 * 59.99621 * 3 2 1 7 7 C 1.38817 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00641 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00075 * 180.02562 * 9 7 2 11 11 C 1.53780 * 113.61163 * 155.00079 * 10 9 7 12 12 C 1.53781 * 87.08218 * 89.11879 * 11 10 9 13 13 C 1.52992 * 113.61648 * 139.98065 * 12 11 10 14 14 N 1.46506 * 109.47162 * 176.52858 * 13 12 11 15 15 C 1.34773 * 119.99969 * 180.02562 * 14 13 12 16 16 O 1.21727 * 120.00211 * 359.71679 * 15 14 13 17 17 C 1.46426 * 120.00011 * 180.02562 * 15 14 13 18 18 C 1.36812 * 126.00292 * 179.43793 * 17 15 14 19 19 N 1.30354 * 115.31267 * 179.83948 * 18 17 15 20 20 C 1.30924 * 117.32081 * 0.45919 * 19 18 17 21 21 C 1.46863 * 125.29102 * 179.78155 * 20 19 18 22 22 C 1.36428 * 125.97201 * 359.96199 * 21 20 19 23 23 C 1.40610 * 106.71787 * 179.97438 * 22 21 20 24 24 C 1.34962 * 107.09039 * 359.97438 * 23 22 21 25 25 O 1.34170 * 108.74368 * 359.77131 * 24 23 22 26 26 S 1.76120 * 109.42030 * 359.74872 * 20 19 18 27 27 C 1.53778 * 87.17271 * 25.38532 * 12 11 10 28 28 H 0.96993 * 119.99551 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99515 * 359.97438 * 9 7 2 30 30 H 1.08997 * 112.84785 * 23.80337 * 10 9 7 31 31 H 1.08990 * 113.61954 * 334.56618 * 11 10 9 32 32 H 1.09012 * 113.60946 * 203.66294 * 11 10 9 33 33 H 1.09006 * 113.60896 * 270.79654 * 12 11 10 34 34 H 1.08995 * 109.47596 * 56.52604 * 13 12 11 35 35 H 1.09006 * 109.47322 * 296.52511 * 13 12 11 36 36 H 0.96998 * 119.99501 * 359.97438 * 14 13 12 37 37 H 1.08007 * 122.33863 * 0.02562 * 18 17 15 38 38 H 1.08001 * 126.63889 * 359.92254 * 22 21 20 39 39 H 1.07999 * 126.46074 * 180.02562 * 23 22 21 40 40 H 1.07998 * 125.62624 * 180.02562 * 24 23 22 41 41 H 1.09000 * 113.61115 * 89.16108 * 27 12 11 42 42 H 1.08996 * 113.61561 * 220.06293 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.2596 -4.8285 0.5971 12 6 0.7211 -5.0795 -0.8213 13 6 0.6205 -6.5621 -1.1853 14 7 0.0230 -6.6988 -2.5160 15 6 -0.1654 -7.9229 -3.0475 16 8 0.1656 -8.9147 -2.4241 17 6 -0.7621 -8.0596 -4.3777 18 6 -0.9982 -9.2353 -5.0362 19 7 -1.5431 -9.1145 -6.2142 20 6 -1.7938 -7.9017 -6.6389 21 6 -2.3976 -7.5642 -7.9344 22 6 -2.7887 -8.4535 -8.8923 23 6 -3.3091 -7.6977 -9.9576 24 6 -3.2138 -6.3982 -9.6058 25 8 -2.6683 -6.3217 -8.3824 26 16 -1.2953 -6.7379 -5.4147 27 6 1.9988 -4.4021 -1.3441 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 3.0653 -3.5637 0.4078 31 1 0.4928 -4.5184 1.3068 32 1 1.8863 -5.6363 0.9754 33 1 -0.1903 -4.5255 -1.0466 34 1 -0.0029 -7.0746 -0.4527 35 1 1.6168 -7.0042 -1.1873 36 1 -0.2377 -5.9084 -3.0141 37 1 -0.7531 -10.1963 -4.6087 38 1 -2.7125 -9.5297 -8.8423 39 1 -3.7105 -8.0841 -10.8828 40 1 -3.5286 -5.5587 -10.2078 41 1 2.8278 -5.0930 -1.4974 42 1 1.8278 -3.7482 -2.1992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091332142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:20 Heat of formation + Delta-G solvation = 61.686428 kcal Electronic energy + Delta-G solvation = -25879.780244 eV Core-core repulsion = 21954.695070 eV Total energy + Delta-G solvation = -3925.085174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.07292 -40.32959 -39.39051 -38.43325 -34.80098 -33.65739 -33.27423 -32.16339 -30.38713 -29.55990 -27.47279 -25.95396 -25.10833 -23.83140 -22.85579 -22.05401 -21.89857 -21.42105 -19.87741 -19.30887 -18.31131 -17.65914 -17.37098 -16.83963 -16.71096 -16.17560 -15.67464 -15.39293 -14.97824 -14.71349 -14.57334 -14.27533 -14.10615 -13.75002 -13.43976 -13.37427 -13.28505 -13.05444 -12.93839 -12.33952 -11.98391 -11.92298 -11.47068 -11.08515 -10.89448 -10.61336 -10.58841 -10.51348 -10.26279 -10.19528 -10.15852 -9.91996 -9.82624 -9.73466 -9.54876 -9.16687 -8.92903 -8.48755 -7.03966 -5.84475 -3.13589 -0.54818 0.62596 1.09987 1.16184 1.95377 2.04208 2.41277 2.93632 2.95663 3.38932 3.45097 3.47089 3.82055 4.32406 4.45478 4.52405 4.54769 4.57834 4.81562 4.98458 5.01980 5.17421 5.19739 5.33846 5.41382 5.45547 5.55183 5.62577 5.64807 5.79601 5.88713 5.89612 6.03603 6.16367 6.23880 6.32700 6.43485 6.53241 6.69542 6.83783 6.99326 7.07084 7.27318 7.66317 7.91796 8.34689 9.45525 10.02697 10.36805 11.37993 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.002153 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.521800 B =12999.868628 C =15204.723280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.146 4.146 12 C -0.122 4.122 13 C 0.131 3.869 14 N -0.716 5.716 15 C 0.594 3.406 16 O -0.528 6.528 17 C -0.285 4.285 18 C 0.125 3.875 19 N -0.458 5.458 20 C 0.146 3.854 21 C 0.022 3.978 22 C -0.124 4.124 23 C -0.220 4.220 24 C -0.004 4.004 25 O -0.165 6.165 26 S 0.177 5.823 27 C -0.170 4.170 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.400 0.600 37 H 0.195 0.805 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.214 0.786 41 H 0.068 0.932 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 -17.714 -18.117 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.186 4.186 12 C -0.140 4.140 13 C 0.008 3.992 14 N -0.366 5.366 15 C 0.378 3.622 16 O -0.406 6.406 17 C -0.410 4.410 18 C -0.035 4.035 19 N -0.173 5.173 20 C -0.123 4.123 21 C -0.031 4.031 22 C -0.148 4.148 23 C -0.239 4.239 24 C -0.075 4.075 25 O -0.061 6.061 26 S 0.437 5.563 27 C -0.211 4.211 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.235 0.765 37 H 0.211 0.789 38 H 0.180 0.820 39 H 0.176 0.824 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.209 -17.215 -17.630 25.412 hybrid contribution 0.014 0.426 -0.171 0.459 sum -6.195 -16.790 -17.802 25.242 Atomic orbital electron populations 1.69668 1.05138 1.25700 1.57516 1.24771 0.95551 0.97819 1.02769 0.86099 0.78827 0.83949 0.77205 1.20481 1.21830 1.21815 1.19339 0.91165 0.83942 1.42869 0.90911 1.42183 1.05685 0.99449 1.87102 1.21088 0.95161 0.85587 0.92648 1.23438 1.00513 0.99737 0.94927 1.22737 0.99736 0.92679 0.98895 1.21588 0.98262 0.97463 0.81859 1.45999 1.63171 1.07191 1.20270 1.16601 0.78386 0.84023 0.83167 1.90854 1.51268 1.37253 1.61255 1.26096 1.15391 0.97115 1.02349 1.22268 0.94318 0.99235 0.87652 1.66355 1.15575 1.20789 1.14559 1.24218 1.01710 0.91042 0.95377 1.18551 1.08204 0.82844 0.93484 1.21988 0.99642 1.01027 0.92154 1.21896 1.07266 0.92946 1.01774 1.24424 0.99352 0.99787 0.83900 1.84077 1.62506 1.29090 1.30384 1.85233 1.53351 1.09134 1.08622 1.23933 0.95596 0.99674 1.01859 0.93471 0.78119 0.91853 0.91215 0.90351 0.88843 0.91303 0.91046 0.76521 0.78856 0.82038 0.82362 0.76944 0.91318 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.05 5.31 -52.55 -0.28 -17.33 16 10 C 0.17 3.18 4.57 -67.03 -0.31 2.88 16 11 C -0.15 -2.27 7.39 -25.92 -0.19 -2.46 16 12 C -0.12 -1.77 3.62 -89.81 -0.33 -2.09 16 13 C 0.13 1.71 5.50 -4.04 -0.02 1.69 16 14 N -0.72 -8.99 5.55 -61.70 -0.34 -9.33 16 15 C 0.59 8.00 7.78 -12.97 -0.10 7.90 16 16 O -0.53 -8.53 16.86 5.16 0.09 -8.44 16 17 C -0.28 -3.32 6.50 -36.80 -0.24 -3.56 16 18 C 0.12 1.37 11.04 -18.69 -0.21 1.17 16 19 N -0.46 -5.11 10.47 -11.00 -0.12 -5.23 16 20 C 0.15 1.57 7.44 -14.45 -0.11 1.46 16 21 C 0.02 0.22 7.21 -36.75 -0.26 -0.05 16 22 C -0.12 -0.99 10.79 -39.34 -0.42 -1.41 16 23 C -0.22 -1.29 10.88 -39.85 -0.43 -1.72 16 24 C 0.00 -0.02 12.08 29.57 0.36 0.33 16 25 O -0.17 -1.48 10.67 4.63 0.05 -1.43 16 26 S 0.18 1.81 22.52 -107.50 -2.42 -0.61 16 27 C -0.17 -2.74 7.44 -25.83 -0.19 -2.94 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.38 9.84 7.90 -40.82 -0.32 9.51 16 30 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.05 8.10 -51.92 -0.42 0.63 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 36 H 0.40 4.59 7.64 -40.82 -0.31 4.28 16 37 H 0.19 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.21 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -32.50 381.49 -9.50 -41.99 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.22 Total: 10.43 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.70 Total: -5.98 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.01 Total: -58.67 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.14 Total: -9.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.42 Total: -0.61 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.50 -9.50 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091332142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.681 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds