Wall clock time and date at job start Wed Apr 1 2020 04:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00302 * 2 1 4 4 H 1.48495 * 109.47485 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46905 * 299.99783 * 3 2 1 6 6 H 1.48497 * 109.47059 * 59.99621 * 3 2 1 7 7 C 1.38817 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00641 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99754 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00075 * 180.02562 * 9 7 2 11 11 C 1.53780 * 113.61163 * 155.00079 * 10 9 7 12 12 C 1.53781 * 87.08218 * 89.11879 * 11 10 9 13 13 C 1.52992 * 113.61648 * 139.98065 * 12 11 10 14 14 N 1.46506 * 109.47162 * 176.52858 * 13 12 11 15 15 C 1.34773 * 119.99969 * 180.02562 * 14 13 12 16 16 O 1.21727 * 120.00211 * 359.71679 * 15 14 13 17 17 C 1.46426 * 120.00011 * 180.02562 * 15 14 13 18 18 C 1.36812 * 126.00292 * 179.43793 * 17 15 14 19 19 N 1.30354 * 115.31267 * 179.83948 * 18 17 15 20 20 C 1.30924 * 117.32081 * 0.45919 * 19 18 17 21 21 C 1.46863 * 125.29102 * 179.78155 * 20 19 18 22 22 C 1.36428 * 125.97201 * 359.96199 * 21 20 19 23 23 C 1.40610 * 106.71787 * 179.97438 * 22 21 20 24 24 C 1.34962 * 107.09039 * 359.97438 * 23 22 21 25 25 O 1.34170 * 108.74368 * 359.77131 * 24 23 22 26 26 S 1.76120 * 109.42030 * 359.74872 * 20 19 18 27 27 C 1.53778 * 87.17271 * 25.38532 * 12 11 10 28 28 H 0.96993 * 119.99551 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99515 * 359.97438 * 9 7 2 30 30 H 1.08997 * 112.84785 * 23.80337 * 10 9 7 31 31 H 1.08990 * 113.61954 * 334.56618 * 11 10 9 32 32 H 1.09012 * 113.60946 * 203.66294 * 11 10 9 33 33 H 1.09006 * 113.60896 * 270.79654 * 12 11 10 34 34 H 1.08995 * 109.47596 * 56.52604 * 13 12 11 35 35 H 1.09006 * 109.47322 * 296.52511 * 13 12 11 36 36 H 0.96998 * 119.99501 * 359.97438 * 14 13 12 37 37 H 1.08007 * 122.33863 * 0.02562 * 18 17 15 38 38 H 1.08001 * 126.63889 * 359.92254 * 22 21 20 39 39 H 1.07999 * 126.46074 * 180.02562 * 23 22 21 40 40 H 1.07998 * 125.62624 * 180.02562 * 24 23 22 41 41 H 1.09000 * 113.61115 * 89.16108 * 27 12 11 42 42 H 1.08996 * 113.61561 * 220.06293 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.2596 -4.8285 0.5971 12 6 0.7211 -5.0795 -0.8213 13 6 0.6205 -6.5621 -1.1853 14 7 0.0230 -6.6988 -2.5160 15 6 -0.1654 -7.9229 -3.0475 16 8 0.1656 -8.9147 -2.4241 17 6 -0.7621 -8.0596 -4.3777 18 6 -0.9982 -9.2353 -5.0362 19 7 -1.5431 -9.1145 -6.2142 20 6 -1.7938 -7.9017 -6.6389 21 6 -2.3976 -7.5642 -7.9344 22 6 -2.7887 -8.4535 -8.8923 23 6 -3.3091 -7.6977 -9.9576 24 6 -3.2138 -6.3982 -9.6058 25 8 -2.6683 -6.3217 -8.3824 26 16 -1.2953 -6.7379 -5.4147 27 6 1.9988 -4.4021 -1.3441 28 1 -0.4849 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 3.0653 -3.5637 0.4078 31 1 0.4928 -4.5184 1.3068 32 1 1.8863 -5.6363 0.9754 33 1 -0.1903 -4.5255 -1.0466 34 1 -0.0029 -7.0746 -0.4527 35 1 1.6168 -7.0042 -1.1873 36 1 -0.2377 -5.9084 -3.0141 37 1 -0.7531 -10.1963 -4.6087 38 1 -2.7125 -9.5297 -8.8423 39 1 -3.7105 -8.0841 -10.8828 40 1 -3.5286 -5.5587 -10.2078 41 1 2.8278 -5.0930 -1.4974 42 1 1.8278 -3.7482 -2.1992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091332142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:20 Heat of formation + Delta-G solvation = 40.039803 kcal Electronic energy + Delta-G solvation = -25880.718912 eV Core-core repulsion = 21954.695070 eV Total energy + Delta-G solvation = -3926.023842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.63631 -41.29863 -40.43533 -39.69412 -36.10712 -35.02949 -34.23510 -32.92525 -32.09411 -30.51014 -28.64173 -26.79608 -26.44796 -25.68170 -23.81128 -23.03564 -22.55824 -22.40921 -20.71362 -20.24937 -19.61081 -19.28861 -18.34750 -17.80969 -17.33525 -17.10478 -16.76378 -16.63106 -16.23288 -15.85959 -15.71269 -15.38246 -15.35743 -15.00912 -14.70518 -14.57576 -14.01045 -13.91438 -13.77807 -13.54350 -13.30411 -12.96762 -12.93579 -12.76393 -12.67643 -12.13883 -12.06123 -11.70429 -11.50422 -11.39163 -11.29251 -11.08339 -10.94826 -10.88897 -10.80762 -10.57714 -10.23340 -9.15572 -9.00261 -7.96002 -5.24086 -1.35136 -0.18076 0.27584 0.48901 1.32007 1.45512 1.47706 1.48113 1.58106 1.69452 1.94230 2.00376 2.55275 3.18685 3.36773 3.57502 3.63127 3.71759 3.75687 3.86975 3.95395 4.00372 4.12247 4.14015 4.30958 4.37966 4.58989 4.70215 4.72296 4.86775 4.92591 4.92614 4.96142 4.98037 5.07831 5.16902 5.33093 5.42541 5.42809 5.52586 5.64994 5.88320 6.19521 6.27997 6.32639 6.89319 7.32990 8.10155 8.32193 9.27467 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.002153 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.521800 B =12999.868628 C =15204.723280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.143 3.857 11 C -0.132 4.132 12 C -0.106 4.106 13 C 0.139 3.861 14 N -0.713 5.713 15 C 0.598 3.402 16 O -0.559 6.559 17 C -0.308 4.308 18 C 0.132 3.868 19 N -0.474 5.474 20 C 0.152 3.848 21 C -0.018 4.018 22 C -0.117 4.117 23 C -0.226 4.226 24 C 0.010 3.990 25 O -0.183 6.183 26 S 0.186 5.814 27 C -0.155 4.155 28 H 0.251 0.749 29 H 0.374 0.626 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.405 0.595 37 H 0.205 0.795 38 H 0.167 0.833 39 H 0.187 0.813 40 H 0.254 0.746 41 H 0.093 0.907 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 -18.358 -19.867 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.372 4.372 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.033 3.967 11 C -0.171 4.171 12 C -0.124 4.124 13 C 0.016 3.984 14 N -0.363 5.363 15 C 0.383 3.617 16 O -0.440 6.440 17 C -0.432 4.432 18 C -0.028 4.028 19 N -0.189 5.189 20 C -0.117 4.117 21 C -0.071 4.071 22 C -0.142 4.142 23 C -0.244 4.244 24 C -0.060 4.060 25 O -0.079 6.079 26 S 0.446 5.554 27 C -0.196 4.196 28 H 0.060 0.940 29 H 0.206 0.794 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.241 0.759 37 H 0.221 0.779 38 H 0.185 0.815 39 H 0.204 0.796 40 H 0.270 0.730 41 H 0.111 0.889 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.980 -17.886 -19.377 27.040 hybrid contribution -0.090 0.572 0.187 0.609 sum -6.070 -17.314 -19.191 26.550 Atomic orbital electron populations 1.69813 1.06543 1.25977 1.59620 1.25546 0.96388 1.01034 1.03844 0.85096 0.78285 0.79943 0.76581 1.19055 1.22109 1.22186 1.19709 0.91540 0.85171 1.40808 0.90520 1.42316 1.05328 1.00577 1.87561 1.21427 0.95175 0.84921 0.95144 1.23335 0.99965 0.98685 0.95094 1.22521 0.98426 0.93494 0.98009 1.21461 0.98746 0.95970 0.82197 1.45954 1.62915 1.07317 1.20141 1.16728 0.77804 0.83621 0.83499 1.90829 1.52819 1.38084 1.62270 1.25864 1.17273 0.97916 1.02154 1.22482 0.93277 0.99578 0.87474 1.66414 1.16675 1.21047 1.14756 1.24545 1.00396 0.90991 0.95736 1.18624 1.10871 0.83719 0.93880 1.22298 0.98196 1.01393 0.92273 1.22267 1.07167 0.92766 1.02250 1.25369 0.96753 1.01247 0.82646 1.84078 1.63104 1.28887 1.31790 1.85117 1.53397 1.08571 1.08269 1.23764 0.97285 0.99293 0.99224 0.94038 0.79371 0.92029 0.92244 0.87323 0.90169 0.90952 0.90455 0.75943 0.77866 0.81550 0.79571 0.73027 0.88863 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.35 13.06 21.65 0.28 -58.07 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.54 29.55 68.60 2.03 47.56 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.24 -13.09 9.97 84.03 0.84 -12.25 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.72 -35.14 5.31 -320.18 -1.70 -36.84 16 10 C 0.14 5.35 4.57 45.58 0.21 5.56 16 11 C -0.13 -3.89 7.39 31.12 0.23 -3.66 16 12 C -0.11 -2.96 3.62 -10.27 -0.04 -3.00 16 13 C 0.14 3.42 5.50 86.38 0.47 3.90 16 14 N -0.71 -17.44 5.55 -467.32 -2.59 -20.04 16 15 C 0.60 15.93 7.78 86.38 0.67 16.60 16 16 O -0.56 -17.90 16.86 -4.43 -0.07 -17.98 16 17 C -0.31 -7.16 6.50 24.07 0.16 -7.00 16 18 C 0.13 2.90 11.04 84.58 0.93 3.83 16 19 N -0.47 -10.51 10.47 -188.73 -1.98 -12.48 16 20 C 0.15 3.24 7.44 87.09 0.65 3.89 16 21 C -0.02 -0.34 7.21 24.11 0.17 -0.17 16 22 C -0.12 -1.70 10.79 22.43 0.24 -1.46 16 23 C -0.23 -2.03 10.88 22.10 0.24 -1.79 16 24 C 0.01 0.08 12.08 67.07 0.81 0.89 16 25 O -0.18 -3.01 10.67 -6.34 -0.07 -3.08 16 26 S 0.19 3.81 22.52 -56.49 -1.27 2.54 16 27 C -0.16 -4.84 7.44 31.18 0.23 -4.61 16 28 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.37 19.59 7.90 -92.70 -0.73 18.86 16 30 H 0.06 2.30 8.10 -2.39 -0.02 2.28 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.11 2.59 8.10 -2.38 -0.02 2.57 16 33 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.87 7.88 -2.38 -0.02 1.85 16 36 H 0.41 9.14 7.64 -92.71 -0.71 8.43 16 37 H 0.20 3.85 8.06 -2.91 -0.02 3.82 16 38 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 40 H 0.25 -0.21 8.06 -2.91 -0.02 -0.23 16 41 H 0.09 2.48 7.92 -2.39 -0.02 2.46 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.89 381.49 0.56 -70.34 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.36 Total: 31.14 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 6.29 Total: -3.09 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -5.99 Total: -127.43 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.14 Total: -21.06 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.27 Total: 2.54 kcal Total: -70.89 0.56 -70.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091332142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.377 kcal (2) G-P(sol) polarization free energy of solvation -70.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds