Wall clock time and date at job start Wed Apr 1 2020 04:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99871 * 2 1 4 4 H 1.48499 * 109.46845 * 240.00149 * 3 2 1 5 5 H 1.48498 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 119.99832 * 3 2 1 7 7 C 1.37873 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47239 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47354 * 179.97438 * 10 9 7 12 12 C 1.35977 * 117.00310 * 180.02562 * 11 10 9 13 13 C 1.38794 * 120.49780 * 0.29324 * 12 11 10 14 14 C 1.38779 * 118.44844 * 180.26091 * 13 12 11 15 15 C 1.38086 * 119.36268 * 359.72996 * 14 13 12 16 16 N 1.31965 * 120.95081 * 359.97438 * 15 14 13 17 17 C 1.32284 * 121.69076 * 0.02562 * 16 15 14 18 18 N 1.39496 * 119.72785 * 180.02562 * 17 16 15 19 19 C 1.34773 * 120.00250 * 0.02562 * 18 17 16 20 20 O 1.21603 * 119.99887 * 359.97438 * 19 18 17 21 21 C 1.47485 * 120.00247 * 179.72649 * 19 18 17 22 22 C 1.40023 * 120.58739 * 0.26803 * 21 19 18 23 23 C 1.38509 * 118.32777 * 180.02562 * 22 21 19 24 24 F 1.35096 * 120.29355 * 179.97438 * 23 22 21 25 25 C 1.38556 * 119.40895 * 0.02562 * 23 22 21 26 26 N 1.31899 * 121.15409 * 0.02562 * 25 23 22 27 27 C 1.32199 * 121.83216 * 359.69892 * 26 25 23 28 28 O 1.35467 * 119.77686 * 180.31709 * 27 26 25 29 29 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.46939 * 60.00015 * 9 7 2 31 31 H 1.09001 * 109.46948 * 300.00056 * 9 7 2 32 32 H 1.09006 * 109.46820 * 60.00033 * 10 9 7 33 33 H 1.09001 * 109.47341 * 299.99992 * 10 9 7 34 34 H 1.08000 * 120.77425 * 359.97438 * 13 12 11 35 35 H 1.07999 * 120.32031 * 179.71322 * 14 13 12 36 36 H 1.07992 * 119.52708 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99637 * 179.97438 * 18 17 16 38 38 H 1.08004 * 120.82946 * 359.97438 * 22 21 19 39 39 H 1.07994 * 119.42150 * 180.02562 * 25 23 22 40 40 H 0.96704 * 113.99799 * 270.27090 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5309 -4.8996 0.0011 12 6 2.2715 -6.0400 0.0018 13 6 3.6581 -5.9794 0.0079 14 6 4.3719 -7.1695 0.0027 15 6 3.6880 -8.3692 -0.0026 16 7 2.3687 -8.3983 -0.0023 17 6 1.6491 -7.2884 0.0025 18 7 0.2563 -7.3669 0.0031 19 6 -0.3508 -8.5702 -0.0007 20 8 0.3155 -9.5874 -0.0052 21 6 -1.8233 -8.6532 0.0060 22 6 -2.6026 -7.4899 0.0107 23 6 -3.9813 -7.6224 0.0175 24 9 -4.7712 -6.5265 0.0228 25 6 -4.5431 -8.8890 0.0200 26 7 -3.7879 -9.9704 0.0165 27 6 -2.4679 -9.8990 0.0046 28 8 -1.7327 -11.0368 -0.0051 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8719 -3.6042 0.8906 33 1 2.8720 -3.6043 -0.8894 34 1 4.1696 -5.0282 0.0119 35 1 5.4518 -7.1576 0.0026 36 1 4.2408 -9.2969 -0.0070 37 1 -0.2752 -6.5555 0.0070 38 1 -2.1401 -6.5139 0.0100 39 1 -5.6180 -8.9925 0.0249 40 1 -1.5147 -11.3717 0.8755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136553609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:54 Heat of formation + Delta-G solvation = -67.189283 kcal Electronic energy + Delta-G solvation = -29085.589404 eV Core-core repulsion = 24588.702584 eV Total energy + Delta-G solvation = -4496.886820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.33150 -41.37985 -40.62930 -38.99488 -37.83495 -37.33418 -34.98994 -33.53214 -33.29384 -31.68653 -30.72601 -30.33542 -29.10530 -25.70386 -25.39994 -24.16389 -23.36832 -22.80173 -21.32777 -20.58653 -19.37087 -18.87225 -18.33662 -17.89114 -17.16334 -16.84437 -16.59036 -16.20661 -15.94385 -15.87793 -15.79885 -15.14427 -14.96663 -14.67797 -14.63459 -14.56823 -14.06833 -13.81616 -13.57795 -13.25676 -12.96909 -12.92458 -12.44021 -12.10159 -12.02697 -12.00153 -11.13314 -11.01361 -10.89666 -10.73512 -10.71946 -10.45891 -10.10738 -10.05289 -9.82097 -9.47466 -9.33026 -9.23646 -9.15019 -8.55699 -7.77400 -6.21420 -4.26778 -0.03087 0.42174 1.15456 1.36329 2.49995 2.58003 3.04620 3.21353 3.25731 3.27122 3.28240 3.44123 3.47971 3.93138 4.01087 4.13056 4.16029 4.30582 4.48784 4.74581 4.87479 4.96516 4.98247 5.05068 5.15493 5.15589 5.31180 5.38717 5.78708 5.83701 5.89424 5.96800 6.09539 6.21993 6.47140 6.51672 7.00012 7.09073 7.27274 7.29877 7.47031 7.56557 7.78184 7.89512 8.09870 8.17955 8.78040 9.38470 10.89870 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.002968 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.676268 B = 9430.373349 C =12423.066600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.070 3.930 13 C -0.147 4.147 14 C -0.156 4.156 15 C 0.076 3.924 16 N -0.442 5.442 17 C 0.326 3.674 18 N -0.646 5.646 19 C 0.554 3.446 20 O -0.451 6.451 21 C -0.173 4.173 22 C -0.063 4.063 23 C 0.038 3.962 24 F -0.119 7.119 25 C 0.126 3.874 26 N -0.480 5.480 27 C 0.363 3.637 28 O -0.454 6.454 29 H 0.265 0.735 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.422 0.578 38 H 0.161 0.839 39 H 0.180 0.820 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 -17.710 1.768 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.230 6.230 12 C 0.019 3.981 13 C -0.174 4.174 14 C -0.177 4.177 15 C -0.081 4.081 16 N -0.157 5.157 17 C 0.094 3.906 18 N -0.295 5.295 19 C 0.339 3.661 20 O -0.320 6.320 21 C -0.180 4.180 22 C -0.090 4.090 23 C 0.016 3.984 24 F -0.098 7.098 25 C -0.034 4.034 26 N -0.198 5.198 27 C 0.182 3.818 28 O -0.262 6.262 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.176 0.824 37 H 0.261 0.739 38 H 0.178 0.822 39 H 0.196 0.804 40 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -3.626 -19.900 1.174 20.261 hybrid contribution 1.139 3.361 0.427 3.574 sum -2.488 -16.539 1.602 16.801 Atomic orbital electron populations 1.69945 1.06101 1.27257 1.49301 1.24971 0.94915 0.99405 0.94726 0.86544 0.79532 0.82529 0.78769 1.20050 1.21056 1.20057 1.20896 0.93028 0.90109 1.52806 0.92382 1.19124 0.94118 0.88897 0.98874 1.23423 0.97299 0.80163 0.99932 1.86089 1.36370 1.12981 1.87538 1.19581 0.91190 0.87024 1.00349 1.21626 0.92164 1.00460 1.03123 1.21924 1.01308 0.92496 1.02015 1.22425 0.88678 0.97980 0.98998 1.67600 1.07986 1.26800 1.13326 1.17682 0.84303 0.87119 1.01493 1.43248 1.04158 1.09947 1.72162 1.17759 0.86187 0.83782 0.78409 1.90929 1.64482 1.33377 1.43216 1.21023 0.94782 0.93554 1.08665 1.21957 0.92338 1.00005 0.94663 1.18554 0.88845 0.84861 1.06152 1.91600 1.73083 1.51278 1.93802 1.22928 1.01167 0.85274 0.94029 1.67427 1.05933 1.32260 1.14154 1.19137 0.86052 0.85349 0.91220 1.84758 1.69127 1.38256 1.34072 0.92539 0.95356 0.95351 0.92852 0.92841 0.83604 0.84645 0.82442 0.73926 0.82165 0.80354 0.73132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.53 -13.89 9.11 -34.44 -0.31 -14.20 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.24 4.70 37.16 0.17 1.42 16 11 O -0.32 -5.55 9.38 -19.67 -0.18 -5.74 16 12 C 0.07 1.11 6.72 -38.91 -0.26 0.84 16 13 C -0.15 -2.02 9.14 -39.18 -0.36 -2.38 16 14 C -0.16 -1.82 10.10 -39.44 -0.40 -2.22 16 15 C 0.08 0.96 11.17 -17.55 -0.20 0.77 16 16 N -0.44 -6.97 7.87 -12.24 -0.10 -7.07 16 17 C 0.33 5.13 7.44 -154.50 -1.15 3.98 16 18 N -0.65 -9.01 5.34 -12.25 -0.07 -9.07 16 19 C 0.55 7.68 7.73 -12.49 -0.10 7.58 16 20 O -0.45 -7.37 13.44 -16.52 -0.22 -7.59 16 21 C -0.17 -1.97 5.90 -104.70 -0.62 -2.58 16 22 C -0.06 -0.61 9.63 -38.81 -0.37 -0.99 16 23 C 0.04 0.35 7.33 -39.36 -0.29 0.06 16 24 F -0.12 -1.18 17.28 2.25 0.04 -1.14 16 25 C 0.13 1.05 11.15 -17.41 -0.19 0.86 16 26 N -0.48 -5.03 10.37 -12.93 -0.13 -5.17 16 27 C 0.36 4.10 7.77 -16.63 -0.13 3.97 16 28 O -0.45 -5.11 11.65 -39.89 -0.46 -5.57 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.96 7.68 -51.93 -0.40 0.56 16 33 H 0.05 0.97 7.71 -51.93 -0.40 0.57 16 34 H 0.15 1.85 6.44 -52.49 -0.34 1.51 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.42 5.18 6.14 -40.82 -0.25 4.93 16 38 H 0.16 1.36 6.51 -52.48 -0.34 1.02 16 39 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.41 2.84 9.06 45.56 0.41 3.25 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -33.29 358.24 -7.44 -40.73 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -2.97 Total: 5.07 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -4.45 Total: -0.79 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.44 Total: -45.72 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.87 Total: -18.90 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.29 -7.44 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136553609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.463 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds