Wall clock time and date at job start Wed Apr 1 2020 04:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99871 * 2 1 4 4 H 1.48499 * 109.46845 * 240.00149 * 3 2 1 5 5 H 1.48498 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 119.99832 * 3 2 1 7 7 C 1.37873 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47239 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47354 * 179.97438 * 10 9 7 12 12 C 1.35977 * 117.00310 * 180.02562 * 11 10 9 13 13 C 1.38794 * 120.49780 * 0.29324 * 12 11 10 14 14 C 1.38779 * 118.44844 * 180.26091 * 13 12 11 15 15 C 1.38086 * 119.36268 * 359.72996 * 14 13 12 16 16 N 1.31965 * 120.95081 * 359.97438 * 15 14 13 17 17 C 1.32284 * 121.69076 * 0.02562 * 16 15 14 18 18 N 1.39496 * 119.72785 * 180.02562 * 17 16 15 19 19 C 1.34773 * 120.00250 * 0.02562 * 18 17 16 20 20 O 1.21603 * 119.99887 * 359.97438 * 19 18 17 21 21 C 1.47485 * 120.00247 * 179.72649 * 19 18 17 22 22 C 1.40023 * 120.58739 * 0.26803 * 21 19 18 23 23 C 1.38509 * 118.32777 * 180.02562 * 22 21 19 24 24 F 1.35096 * 120.29355 * 179.97438 * 23 22 21 25 25 C 1.38556 * 119.40895 * 0.02562 * 23 22 21 26 26 N 1.31899 * 121.15409 * 0.02562 * 25 23 22 27 27 C 1.32199 * 121.83216 * 359.69892 * 26 25 23 28 28 O 1.35467 * 119.77686 * 180.31709 * 27 26 25 29 29 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.46939 * 60.00015 * 9 7 2 31 31 H 1.09001 * 109.46948 * 300.00056 * 9 7 2 32 32 H 1.09006 * 109.46820 * 60.00033 * 10 9 7 33 33 H 1.09001 * 109.47341 * 299.99992 * 10 9 7 34 34 H 1.08000 * 120.77425 * 359.97438 * 13 12 11 35 35 H 1.07999 * 120.32031 * 179.71322 * 14 13 12 36 36 H 1.07992 * 119.52708 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99637 * 179.97438 * 18 17 16 38 38 H 1.08004 * 120.82946 * 359.97438 * 22 21 19 39 39 H 1.07994 * 119.42150 * 180.02562 * 25 23 22 40 40 H 0.96704 * 113.99799 * 270.27090 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5309 -4.8996 0.0011 12 6 2.2715 -6.0400 0.0018 13 6 3.6581 -5.9794 0.0079 14 6 4.3719 -7.1695 0.0027 15 6 3.6880 -8.3692 -0.0026 16 7 2.3687 -8.3983 -0.0023 17 6 1.6491 -7.2884 0.0025 18 7 0.2563 -7.3669 0.0031 19 6 -0.3508 -8.5702 -0.0007 20 8 0.3155 -9.5874 -0.0052 21 6 -1.8233 -8.6532 0.0060 22 6 -2.6026 -7.4899 0.0107 23 6 -3.9813 -7.6224 0.0175 24 9 -4.7712 -6.5265 0.0228 25 6 -4.5431 -8.8890 0.0200 26 7 -3.7879 -9.9704 0.0165 27 6 -2.4679 -9.8990 0.0046 28 8 -1.7327 -11.0368 -0.0051 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.8719 -3.6042 0.8906 33 1 2.8720 -3.6043 -0.8894 34 1 4.1696 -5.0282 0.0119 35 1 5.4518 -7.1576 0.0026 36 1 4.2408 -9.2969 -0.0070 37 1 -0.2752 -6.5555 0.0070 38 1 -2.1401 -6.5139 0.0100 39 1 -5.6180 -8.9925 0.0249 40 1 -1.5147 -11.3717 0.8755 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136553609.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:53 Heat of formation + Delta-G solvation = -90.780476 kcal Electronic energy + Delta-G solvation = -29086.612395 eV Core-core repulsion = 24588.702584 eV Total energy + Delta-G solvation = -4497.909811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.11183 -42.36042 -41.61688 -40.08258 -39.06515 -38.16455 -36.08584 -35.45234 -34.15157 -32.89710 -32.22401 -31.27788 -30.28374 -27.17742 -26.51428 -25.15322 -24.55079 -23.83366 -22.81811 -21.76438 -20.26287 -19.86126 -19.29241 -19.10405 -18.25628 -17.92949 -17.82145 -17.43886 -17.15720 -16.92520 -16.72632 -16.46778 -16.26156 -15.98051 -15.59444 -15.38202 -15.21765 -14.84937 -14.69672 -14.35013 -14.16017 -14.05145 -13.77218 -13.62990 -13.30626 -12.85086 -12.82075 -12.72744 -12.45763 -11.95742 -11.77077 -11.72362 -11.62313 -11.42814 -11.31158 -10.90537 -10.59861 -10.43714 -10.23610 -10.03239 -8.90518 -8.25295 -6.37760 -0.85265 -0.37221 0.11860 0.27468 1.42892 1.45148 1.52972 1.56628 1.59048 2.09037 2.22166 2.44170 2.44764 2.68701 2.86534 3.10131 3.10924 3.34468 3.41346 3.58527 3.81275 3.84755 4.03404 4.11697 4.16755 4.29557 4.30497 4.33099 4.45581 4.55584 4.74749 4.94463 5.08851 5.17553 5.19451 5.31071 5.50823 5.51251 5.72828 6.01552 6.08095 6.29145 6.31244 6.58053 6.76856 6.80227 7.13095 7.32357 8.86895 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.002968 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.676268 B = 9430.373349 C =12423.066600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.330 6.330 12 C 0.044 3.956 13 C -0.148 4.148 14 C -0.141 4.141 15 C 0.075 3.925 16 N -0.470 5.470 17 C 0.309 3.691 18 N -0.646 5.646 19 C 0.555 3.445 20 O -0.482 6.482 21 C -0.186 4.186 22 C -0.059 4.059 23 C 0.035 3.965 24 F -0.122 7.122 25 C 0.143 3.857 26 N -0.492 5.492 27 C 0.361 3.639 28 O -0.469 6.469 29 H 0.266 0.734 30 H 0.002 0.998 31 H 0.003 0.997 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.158 0.842 35 H 0.177 0.823 36 H 0.189 0.811 37 H 0.425 0.575 38 H 0.167 0.833 39 H 0.216 0.784 40 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 -17.861 1.847 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.243 6.243 12 C -0.007 4.007 13 C -0.175 4.175 14 C -0.162 4.162 15 C -0.082 4.082 16 N -0.185 5.185 17 C 0.078 3.922 18 N -0.295 5.295 19 C 0.342 3.658 20 O -0.353 6.353 21 C -0.193 4.193 22 C -0.086 4.086 23 C 0.013 3.987 24 F -0.101 7.101 25 C -0.016 4.016 26 N -0.210 5.210 27 C 0.181 3.819 28 O -0.280 6.280 29 H 0.075 0.925 30 H 0.020 0.980 31 H 0.021 0.979 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.175 0.825 35 H 0.194 0.806 36 H 0.205 0.795 37 H 0.265 0.735 38 H 0.184 0.816 39 H 0.232 0.768 40 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -2.189 -20.062 1.264 20.221 hybrid contribution 0.700 3.284 0.410 3.383 sum -1.489 -16.778 1.674 16.927 Atomic orbital electron populations 1.70084 1.07856 1.28165 1.50608 1.25932 0.95740 1.03356 0.94328 0.85445 0.78205 0.77750 0.79341 1.18997 1.21104 1.18955 1.21371 0.93871 0.91073 1.52036 0.91109 1.18942 0.94530 0.90944 0.96326 1.22969 0.95628 0.79510 1.00980 1.86013 1.36725 1.13074 1.88493 1.19732 0.92198 0.86112 1.02615 1.21919 0.91354 1.01949 1.02237 1.22313 1.03171 0.91031 0.99657 1.23083 0.87965 0.99860 0.97253 1.67661 1.09569 1.26978 1.14324 1.17874 0.84948 0.87252 1.02166 1.43309 1.03991 1.10264 1.71967 1.18069 0.87064 0.83269 0.77445 1.90891 1.65385 1.34127 1.44887 1.20782 0.93389 0.94237 1.10901 1.22035 0.92802 0.99849 0.93899 1.18578 0.88451 0.85170 1.06453 1.91597 1.73044 1.51542 1.93874 1.23492 1.02547 0.84256 0.91319 1.67535 1.05478 1.32968 1.15001 1.19229 0.86479 0.85232 0.90917 1.84701 1.69341 1.38337 1.35588 0.92543 0.97999 0.97905 0.91662 0.91753 0.82459 0.80585 0.79450 0.73503 0.81579 0.76779 0.71405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.63 13.29 21.45 0.28 -53.34 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.97 41.44 29.54 68.60 2.03 43.46 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.55 -28.63 9.11 25.60 0.23 -28.39 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.47 5.34 29.85 0.16 1.63 16 10 C 0.08 3.15 4.70 71.98 0.34 3.48 16 11 O -0.33 -11.74 9.38 -93.29 -0.88 -12.62 16 12 C 0.04 1.38 6.72 22.71 0.15 1.53 16 13 C -0.15 -3.78 9.14 22.53 0.21 -3.57 16 14 C -0.14 -2.84 10.10 22.36 0.23 -2.62 16 15 C 0.08 1.75 11.17 84.64 0.95 2.69 16 16 N -0.47 -14.62 7.87 -192.62 -1.52 -16.13 16 17 C 0.31 9.82 7.44 133.02 0.99 10.81 16 18 N -0.65 -18.72 5.34 -310.94 -1.66 -20.38 16 19 C 0.56 15.95 7.73 86.68 0.67 16.62 16 20 O -0.48 -16.19 13.44 16.80 0.23 -15.97 16 21 C -0.19 -4.32 5.90 -19.91 -0.12 -4.44 16 22 C -0.06 -1.17 9.63 22.77 0.22 -0.95 16 23 C 0.04 0.62 7.33 22.41 0.16 0.78 16 24 F -0.12 -2.31 17.28 44.97 0.78 -1.54 16 25 C 0.14 2.16 11.15 84.76 0.95 3.10 16 26 N -0.49 -9.83 10.37 -307.83 -3.19 -13.03 16 27 C 0.36 8.17 7.77 85.13 0.66 8.83 16 28 O -0.47 -10.70 11.65 -66.82 -0.78 -11.48 16 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.07 2.29 7.68 -2.38 -0.02 2.27 16 33 H 0.06 2.27 7.71 -2.39 -0.02 2.25 16 34 H 0.16 3.60 6.44 -2.91 -0.02 3.58 16 35 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.43 11.09 6.14 -92.71 -0.57 10.52 16 38 H 0.17 2.96 6.51 -2.91 -0.02 2.95 16 39 H 0.22 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.42 6.08 9.06 -74.05 -0.67 5.40 16 Total: -1.00 -72.92 358.24 1.45 -71.47 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.10 Total: 19.28 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.26 Total: 10.27 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -6.08 Total: -102.88 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.43 Total: -40.06 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -72.92 1.45 -71.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136553609.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.311 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds