Wall clock time and date at job start Wed Apr 1 2020 04:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00092 * 2 1 4 4 H 1.48501 * 109.47337 * 270.00230 * 3 2 1 5 5 H 1.48503 * 109.47209 * 30.00913 * 3 2 1 6 6 H 1.48507 * 109.47117 * 150.00144 * 3 2 1 7 7 C 1.38735 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99573 * 359.97438 * 7 2 1 9 9 S 1.76196 * 119.99999 * 179.97438 * 7 2 1 10 10 C 1.76194 * 100.00177 * 185.11764 * 9 7 2 11 11 C 1.39223 * 120.02078 * 265.25662 * 10 9 7 12 12 C 1.38136 * 120.20068 * 179.69570 * 11 10 9 13 13 C 1.38083 * 120.24270 * 0.59899 * 12 11 10 14 14 C 1.39629 * 120.03871 * 359.67840 * 13 12 11 15 15 C 1.47865 * 120.09952 * 180.02562 * 14 13 12 16 16 O 1.21553 * 120.00105 * 179.97438 * 15 14 13 17 17 N 1.34773 * 120.00337 * 359.97438 * 15 14 13 18 18 C 1.46497 * 120.00586 * 179.97438 * 17 15 14 19 19 C 1.52992 * 109.47608 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47399 * 179.97438 * 19 18 17 21 21 C 1.50697 * 109.47099 * 179.97438 * 20 19 18 22 22 N 1.27571 * 126.41737 * 359.69750 * 21 20 19 23 23 N 1.39150 * 113.16220 * 179.88406 * 22 21 20 24 24 C 1.34950 * 111.12500 * 0.39475 * 23 22 21 25 25 O 1.21305 * 127.50283 * 179.79105 * 24 23 22 26 26 C 1.51443 * 126.41611 * 180.02562 * 21 20 19 27 27 C 1.38839 * 120.02036 * 85.52685 * 10 9 7 28 28 H 0.96994 * 120.00079 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.89882 * 359.97193 * 11 10 9 30 30 H 1.08002 * 119.87655 * 180.27610 * 12 11 10 31 31 H 1.08002 * 119.98159 * 179.70047 * 13 12 11 32 32 H 0.97001 * 119.99868 * 359.97438 * 17 15 14 33 33 H 1.08998 * 109.47020 * 300.00392 * 18 17 15 34 34 H 1.09004 * 109.46604 * 59.99596 * 18 17 15 35 35 H 1.08998 * 109.47535 * 300.00425 * 19 18 17 36 36 H 1.09004 * 109.47184 * 60.00299 * 19 18 17 37 37 H 1.08992 * 109.47222 * 300.00085 * 20 19 18 38 38 H 1.09002 * 109.46880 * 60.00518 * 20 19 18 39 39 H 0.97009 * 124.43885 * 180.18193 * 23 22 21 40 40 H 1.09005 * 110.60395 * 298.47870 * 26 21 20 41 41 H 1.08996 * 110.60886 * 61.44842 * 26 21 20 42 42 H 1.07996 * 120.11843 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0099 -1.2015 -0.0005 8 1 1.4698 -2.1368 -0.0005 9 16 3.7719 -1.2016 -0.0012 10 6 4.0778 -2.9298 -0.1565 11 6 4.2973 -3.7032 0.9801 12 6 4.5313 -5.0596 0.8631 13 6 4.5612 -5.6553 -0.3822 14 6 4.3481 -4.8882 -1.5293 15 6 4.3793 -5.5248 -2.8635 16 8 4.1930 -4.8554 -3.8608 17 7 4.6143 -6.8473 -2.9739 18 6 4.6446 -7.4782 -4.2957 19 6 4.9290 -8.9734 -4.1408 20 6 4.9601 -9.6324 -5.5213 21 6 5.2408 -11.1051 -5.3687 22 7 5.4327 -11.7300 -4.2732 23 7 5.6666 -13.0899 -4.4525 24 6 5.6415 -13.4194 -5.7610 25 8 5.8116 -14.5165 -6.2497 26 6 5.3548 -12.1193 -6.4877 27 6 4.1056 -3.5202 -1.4128 28 1 -0.4850 0.8400 0.0004 29 1 4.2803 -3.2421 1.9565 30 1 4.6965 -5.6554 1.7487 31 1 4.7493 -6.7152 -0.4691 32 1 4.7633 -7.3815 -2.1780 33 1 3.6812 -7.3401 -4.7864 34 1 5.4286 -7.0201 -4.8989 35 1 5.8925 -9.1112 -3.6503 36 1 4.1453 -9.4318 -3.5375 37 1 3.9963 -9.4947 -6.0114 38 1 5.7435 -9.1743 -6.1250 39 1 5.8297 -13.7183 -3.7317 40 1 4.4178 -12.1875 -7.0405 41 1 6.1775 -11.8632 -7.1552 42 1 3.9395 -2.9220 -2.2965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141691161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:13 Heat of formation + Delta-G solvation = -4.680453 kcal Electronic energy + Delta-G solvation = -25294.794669 eV Core-core repulsion = 21366.831611 eV Total energy + Delta-G solvation = -3927.963058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72957 -40.02470 -38.26535 -37.94470 -36.16123 -33.98888 -32.50617 -31.76222 -30.75258 -30.52550 -29.79472 -27.03575 -25.68816 -23.74471 -22.68075 -22.18650 -21.86807 -20.68488 -20.02319 -18.48567 -18.25205 -17.33237 -16.98524 -16.33606 -16.06348 -15.78846 -15.52912 -15.28051 -15.22472 -14.93645 -14.79157 -14.41649 -14.22095 -13.71877 -13.53687 -13.42234 -13.08762 -12.92714 -12.72262 -12.63025 -12.33682 -12.04678 -11.86241 -11.63055 -11.41624 -11.36031 -11.21366 -11.10637 -10.64115 -10.43637 -9.96382 -9.84205 -9.54925 -9.26655 -9.18933 -9.08940 -8.66289 -8.17268 -7.14471 -6.33706 -4.09322 0.94676 1.08344 1.57462 1.98503 2.11031 2.82777 2.95540 3.02784 3.21753 3.26643 3.37942 3.45976 3.50757 4.05314 4.14013 4.25511 4.44653 4.47661 4.56456 4.59018 4.80332 4.88800 4.98250 5.02261 5.04975 5.07098 5.07931 5.16734 5.27002 5.44096 5.63048 5.65831 5.74817 5.77584 5.90496 6.03866 6.16444 6.28935 6.49424 6.55354 6.81340 6.94684 7.08988 7.32726 7.42228 7.90390 8.23097 8.43761 9.10128 10.75676 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.001563 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.555361 B =17908.500372 C =18374.319708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.095 3.905 3 Si 0.858 3.142 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.239 1.239 7 C -0.510 4.510 8 H 0.091 0.909 9 S -0.112 6.112 10 C -0.086 4.086 11 C -0.051 4.051 12 C -0.140 4.140 13 C -0.086 4.086 14 C -0.153 4.153 15 C 0.564 3.436 16 O -0.533 6.533 17 N -0.733 5.733 18 C 0.119 3.881 19 C -0.129 4.129 20 C -0.043 4.043 21 C 0.101 3.899 22 N -0.232 5.232 23 N -0.574 5.574 24 C 0.498 3.502 25 O -0.502 6.502 26 C -0.177 4.177 27 C -0.017 4.017 28 H 0.272 0.728 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.435 0.565 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.351 -22.580 -8.225 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.163 1.163 7 C -0.657 4.657 8 H 0.109 0.891 9 S 0.122 5.878 10 C -0.196 4.196 11 C -0.072 4.072 12 C -0.160 4.160 13 C -0.105 4.105 14 C -0.158 4.158 15 C 0.353 3.647 16 O -0.410 6.410 17 N -0.386 5.386 18 C -0.005 4.005 19 C -0.167 4.167 20 C -0.082 4.082 21 C -0.093 4.093 22 N -0.041 5.041 23 N -0.321 5.321 24 C 0.284 3.716 25 O -0.375 6.375 26 C -0.219 4.219 27 C -0.038 4.038 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.235 0.765 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.281 0.719 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.914 -21.667 -8.192 26.520 hybrid contribution -0.645 -1.176 -0.113 1.346 sum 12.269 -22.843 -8.306 27.227 Atomic orbital electron populations 1.69926 1.05855 1.27810 1.47555 1.24745 0.94515 0.98844 0.93271 0.86732 0.81574 0.83479 0.79965 1.19013 1.19793 1.16349 1.22248 0.86737 0.97721 1.58971 0.89077 1.83068 1.11257 0.97853 1.95637 1.22205 1.02241 1.01075 0.94116 1.21901 0.93510 0.93069 0.98750 1.21052 1.02746 0.95089 0.97068 1.21179 0.98386 0.98640 0.92259 1.19834 1.08727 0.94991 0.92284 1.18358 0.75822 0.81464 0.89100 1.90780 1.48754 1.62991 1.38523 1.45843 1.74491 1.08896 1.09384 1.21316 1.02603 0.91520 0.85060 1.21703 1.04046 0.94110 0.96877 1.20176 1.04450 0.84652 0.98958 1.25341 0.96131 0.97337 0.90447 1.74722 1.13433 0.90185 1.25718 1.47642 1.69502 1.06128 1.08817 1.21385 0.76031 0.90364 0.83842 1.90845 1.49100 1.25033 1.72501 1.22155 1.07444 0.92573 0.99682 1.21898 0.91224 0.92675 0.98024 0.91807 0.84918 0.85620 0.86282 0.76454 0.91123 0.91182 0.90318 0.90286 0.87889 0.87946 0.71936 0.84448 0.84452 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.09 13.97 55.49 0.78 -25.31 16 2 C 0.10 2.72 5.50 -17.45 -0.10 2.63 16 3 Si 0.86 20.85 27.73 -169.99 -4.71 16.13 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.24 -5.62 6.74 56.52 0.38 -5.24 16 7 C -0.51 -14.52 10.01 30.92 0.31 -14.21 16 8 H 0.09 2.82 8.02 -52.49 -0.42 2.40 16 9 S -0.11 -2.69 19.38 -107.50 -2.08 -4.77 16 10 C -0.09 -1.75 5.45 -38.99 -0.21 -1.96 16 11 C -0.05 -0.87 9.79 -39.25 -0.38 -1.26 16 12 C -0.14 -1.88 10.02 -39.68 -0.40 -2.27 16 13 C -0.09 -1.08 9.54 -39.12 -0.37 -1.46 16 14 C -0.15 -2.43 5.87 -105.00 -0.62 -3.05 16 15 C 0.56 8.40 7.77 -12.32 -0.10 8.31 16 16 O -0.53 -9.94 16.34 5.32 0.09 -9.85 16 17 N -0.73 -7.19 5.51 -61.25 -0.34 -7.52 16 18 C 0.12 0.86 5.67 -4.05 -0.02 0.84 16 19 C -0.13 -0.55 4.83 -26.73 -0.13 -0.68 16 20 C -0.04 -0.10 5.83 -27.88 -0.16 -0.26 16 21 C 0.10 0.40 7.28 -78.73 -0.57 -0.17 16 22 N -0.23 -1.40 11.52 35.53 0.41 -0.99 16 23 N -0.57 -3.60 7.13 31.51 0.22 -3.38 16 24 C 0.50 3.68 8.93 -10.43 -0.09 3.59 16 25 O -0.50 -5.63 18.03 5.54 0.10 -5.53 16 26 C -0.18 -0.63 6.93 -28.19 -0.20 -0.83 16 27 C -0.02 -0.32 9.34 -38.92 -0.36 -0.69 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.01 6.40 -52.49 -0.34 0.67 16 32 H 0.40 2.90 6.50 -40.82 -0.27 2.63 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.44 2.07 8.96 -183.30 -1.64 0.43 16 40 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.14 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.14 2.94 7.65 -52.49 -0.40 2.54 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -37.03 380.42 -9.66 -46.69 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.45 Total: 0.27 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -3.41 Total: -11.47 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 1.07 Total: -37.20 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.19 Total: -15.39 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.71 Total: 16.13 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.08 Total: -4.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.03 -9.66 -46.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141691161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.012 kcal (2) G-P(sol) polarization free energy of solvation -37.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds