Wall clock time and date at job start Wed Apr 1 2020 04:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99951 * 2 1 4 4 H 1.48504 * 109.47103 * 270.00533 * 3 2 1 5 5 H 1.48500 * 109.47286 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47259 * 150.00601 * 3 2 1 7 7 C 1.37879 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99608 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99886 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.47959 * 111.00023 * 170.00279 * 10 9 7 12 12 C 1.53933 * 86.18078 * 222.41858 * 11 10 9 13 13 O 1.42907 * 113.73529 * 138.07943 * 12 11 10 14 14 C 1.35443 * 117.00170 * 150.00345 * 13 12 11 15 15 N 1.33106 * 122.16614 * 0.02562 * 14 13 12 16 16 C 1.31789 * 123.00379 * 179.97438 * 15 14 13 17 17 N 1.32156 * 124.00341 * 359.97438 * 16 15 14 18 18 C 1.33933 * 117.38763 * 0.02562 * 17 16 15 19 19 S 1.74550 * 129.34028 * 179.97438 * 18 17 16 20 20 C 1.75579 * 92.36328 * 180.02562 * 19 18 17 21 21 C 1.34013 * 111.50744 * 359.97438 * 20 19 18 22 22 C 1.40399 * 120.94366 * 0.02562 * 18 17 16 23 23 C 1.52420 * 121.91767 * 179.97438 * 21 20 19 24 24 C 1.53182 * 108.14753 * 343.35815 * 23 21 20 25 25 O 1.43057 * 109.24599 * 48.95991 * 24 23 21 26 26 C 1.43081 * 113.73595 * 288.88648 * 25 24 23 27 27 C 1.47965 * 110.99841 * 70.64385 * 10 9 7 28 28 H 0.97001 * 119.99695 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47134 * 60.00741 * 9 7 2 30 30 H 1.09000 * 109.47392 * 300.00647 * 9 7 2 31 31 H 1.09003 * 113.76320 * 108.10545 * 11 10 9 32 32 H 1.08993 * 113.76238 * 336.73710 * 11 10 9 33 33 H 1.08998 * 113.73752 * 269.25610 * 12 11 10 34 34 H 1.08002 * 117.99900 * 179.97438 * 16 15 14 35 35 H 1.08999 * 109.72843 * 103.01935 * 23 21 20 36 36 H 1.09002 * 109.72933 * 223.65165 * 23 21 20 37 37 H 1.09009 * 109.50464 * 168.88726 * 24 23 21 38 38 H 1.08995 * 109.51138 * 288.98137 * 24 23 21 39 39 H 1.09001 * 109.62836 * 290.98838 * 26 25 24 40 40 H 1.09001 * 109.65154 * 170.36798 * 26 25 24 41 41 H 1.08994 * 113.75714 * 23.26526 * 27 10 9 42 42 H 1.08999 * 113.75959 * 251.90369 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5162 -4.9027 0.2393 12 6 2.6927 -5.2412 1.1724 13 8 2.2967 -5.8746 2.3907 14 6 3.1799 -6.7347 2.9519 15 7 4.3668 -6.9884 2.4055 16 6 5.2386 -7.8214 2.9373 17 7 5.0334 -8.4890 4.0592 18 6 3.8641 -8.2992 4.6841 19 16 3.2724 -9.0100 6.1645 20 6 1.7547 -8.1330 6.0643 21 6 1.7087 -7.3533 4.9753 22 6 2.8995 -7.4237 4.1605 23 6 0.4963 -6.4869 4.6551 24 6 -0.6848 -6.9919 5.4898 25 8 -0.2723 -7.1352 6.8521 26 6 0.6230 -8.2297 7.0706 27 6 2.8981 -3.7212 1.3028 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5570 0.8896 31 1 1.4576 -5.5406 -0.6427 32 1 0.5617 -4.8001 0.7554 33 1 3.5143 -5.7555 0.6738 34 1 6.1781 -7.9674 2.4250 35 1 0.7088 -5.4484 4.9089 36 1 0.2580 -6.5651 3.5943 37 1 -1.5045 -6.2757 5.4312 38 1 -1.0160 -7.9566 5.1057 39 1 0.0908 -9.1711 6.9340 40 1 1.0266 -8.1770 8.0818 41 1 2.3478 -3.2730 2.1300 42 1 3.9437 -3.4149 1.2705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233889577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:00 Heat of formation + Delta-G solvation = 24.905856 kcal Electronic energy + Delta-G solvation = -27668.933305 eV Core-core repulsion = 23742.253206 eV Total energy + Delta-G solvation = -3926.680099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40359 -39.80108 -39.40775 -37.46107 -35.85156 -33.27267 -32.87310 -31.63831 -30.77356 -29.30891 -26.42094 -26.00005 -25.68173 -24.85896 -23.56914 -23.35466 -21.84241 -19.77513 -19.56074 -19.17301 -18.09052 -17.27094 -16.60911 -16.44867 -16.40298 -16.07594 -15.68159 -15.33640 -14.86229 -14.50809 -14.48244 -14.44575 -14.24523 -13.91673 -13.39876 -13.15306 -13.11350 -12.64594 -12.41592 -12.24285 -12.02925 -11.78211 -11.62811 -11.60693 -11.17626 -11.00610 -10.95029 -10.81847 -10.66931 -10.38475 -10.11741 -9.91553 -9.80163 -9.64678 -9.26438 -9.01309 -8.56906 -8.18716 -7.99223 -6.12286 -4.14667 0.12659 0.70570 0.80309 1.44954 1.74434 2.63328 3.27492 3.33559 3.37249 3.41597 3.44533 3.73300 4.09556 4.13872 4.24174 4.35776 4.54711 4.61562 4.66053 4.71963 4.75944 4.88189 4.95016 5.05679 5.23986 5.27478 5.37310 5.41476 5.52308 5.60405 5.71381 5.80038 5.90949 6.00392 6.05948 6.19775 6.27513 6.45340 6.50384 6.68836 7.04207 7.09973 7.51301 7.75613 7.76921 7.97986 8.29683 8.92153 9.50331 10.98874 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.002801 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.850959 B = 9993.389610 C =11253.988017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.164 3.836 10 N -0.469 5.469 11 C 0.004 3.996 12 C 0.043 3.957 13 O -0.273 6.273 14 C 0.435 3.565 15 N -0.585 5.585 16 C 0.349 3.651 17 N -0.499 5.499 18 C 0.098 3.902 19 S 0.192 5.808 20 C -0.246 4.246 21 C -0.036 4.036 22 C -0.197 4.197 23 C -0.094 4.094 24 C 0.059 3.941 25 O -0.369 6.369 26 C 0.140 3.860 27 C 0.015 3.985 28 H 0.263 0.737 29 H 0.036 0.964 30 H 0.002 0.998 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.203 0.797 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.630 -20.753 12.793 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.038 3.962 10 N -0.194 5.194 11 C -0.125 4.125 12 C -0.013 4.013 13 O -0.173 6.173 14 C 0.242 3.758 15 N -0.318 5.318 16 C 0.057 3.943 17 N -0.221 5.221 18 C -0.153 4.153 19 S 0.452 5.548 20 C -0.362 4.362 21 C -0.048 4.048 22 C -0.211 4.211 23 C -0.133 4.133 24 C -0.018 4.018 25 O -0.287 6.287 26 C 0.061 3.939 27 C -0.114 4.114 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.219 0.781 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.095 0.905 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.897 -21.494 13.068 25.454 hybrid contribution -0.989 1.999 -0.476 2.280 sum 2.908 -19.495 12.591 23.389 Atomic orbital electron populations 1.69950 1.06079 1.26987 1.50534 1.24985 0.94896 0.99432 0.95122 0.86470 0.79716 0.82864 0.78235 1.20502 1.21194 1.19808 1.21062 0.93481 0.89836 1.50841 0.91913 1.20234 0.90771 0.88330 0.96880 1.68637 1.21404 1.01922 1.27468 1.24270 0.95970 0.95077 0.97136 1.25296 1.00456 0.93676 0.81892 1.86417 1.38890 1.51852 1.40154 1.20110 0.85885 0.83804 0.85981 1.67595 1.03877 1.22895 1.37428 1.24828 0.96776 0.84906 0.87809 1.69847 1.16519 1.25893 1.09837 1.23803 0.93826 0.97208 1.00448 1.83812 1.07817 1.45239 1.17906 1.25333 1.01760 1.06206 1.02872 1.19947 0.94818 0.97497 0.92537 1.19538 0.97713 1.05355 0.98518 1.21317 0.90940 0.99184 1.01843 1.22716 0.96174 1.01459 0.81405 1.88088 1.63149 1.50501 1.26999 1.21267 0.85781 0.90622 0.96197 1.24188 1.01850 0.91171 0.94207 0.92771 0.94606 0.98052 0.89183 0.90756 0.85829 0.78066 0.88638 0.88344 0.87489 0.92401 0.90843 0.87229 0.90487 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -14.25 8.84 -34.44 -0.30 -14.55 16 8 H 0.06 1.73 7.80 -52.49 -0.41 1.32 16 9 C 0.16 4.15 4.58 -4.98 -0.02 4.13 16 10 N -0.47 -9.83 6.25 -239.98 -1.50 -11.33 16 11 C 0.00 0.08 7.81 -2.77 -0.02 0.05 16 12 C 0.04 0.67 4.41 -25.80 -0.11 0.56 16 13 O -0.27 -4.08 8.56 -18.02 -0.15 -4.24 16 14 C 0.44 6.31 7.71 -15.59 -0.12 6.19 16 15 N -0.59 -8.04 8.80 -13.84 -0.12 -8.16 16 16 C 0.35 4.10 12.14 -91.85 -1.12 2.99 16 17 N -0.50 -6.38 10.75 -13.32 -0.14 -6.52 16 18 C 0.10 1.27 7.50 -15.82 -0.12 1.15 16 19 S 0.19 1.91 23.17 -107.50 -2.49 -0.58 16 20 C -0.25 -2.54 6.39 -35.28 -0.23 -2.77 16 21 C -0.04 -0.44 5.99 -102.80 -0.62 -1.05 16 22 C -0.20 -2.69 6.00 -105.23 -0.63 -3.32 16 23 C -0.09 -1.03 5.66 -26.93 -0.15 -1.18 16 24 C 0.06 0.53 6.78 37.25 0.25 0.79 16 25 O -0.37 -3.79 10.77 -35.23 -0.38 -4.17 16 26 C 0.14 1.15 7.21 36.52 0.26 1.41 16 27 C 0.01 0.28 7.29 -2.76 -0.02 0.26 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.00 0.04 7.69 -51.93 -0.40 -0.36 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.07 1.25 7.79 -51.93 -0.40 0.85 16 33 H 0.12 1.88 7.00 -51.93 -0.36 1.52 16 34 H 0.20 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.10 1.09 7.37 -51.93 -0.38 0.70 16 37 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.53 7.78 -51.93 -0.40 1.13 16 42 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -31.61 363.07 -11.95 -43.56 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.30 Total: -1.17 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.04 Total: -3.85 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -1.03 Total: -51.45 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.53 Total: -8.40 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.49 Total: -0.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.61 -11.95 -43.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233889577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.463 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds