Wall clock time and date at job start Wed Apr 1 2020 04:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99951 * 2 1 4 4 H 1.48504 * 109.47103 * 270.00533 * 3 2 1 5 5 H 1.48500 * 109.47286 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47259 * 150.00601 * 3 2 1 7 7 C 1.37879 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99608 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99886 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.47959 * 111.00023 * 170.00279 * 10 9 7 12 12 C 1.53933 * 86.18078 * 222.41858 * 11 10 9 13 13 O 1.42907 * 113.73529 * 138.07943 * 12 11 10 14 14 C 1.35443 * 117.00170 * 150.00345 * 13 12 11 15 15 N 1.33106 * 122.16614 * 0.02562 * 14 13 12 16 16 C 1.31789 * 123.00379 * 179.97438 * 15 14 13 17 17 N 1.32156 * 124.00341 * 359.97438 * 16 15 14 18 18 C 1.33933 * 117.38763 * 0.02562 * 17 16 15 19 19 S 1.74550 * 129.34028 * 179.97438 * 18 17 16 20 20 C 1.75579 * 92.36328 * 180.02562 * 19 18 17 21 21 C 1.34013 * 111.50744 * 359.97438 * 20 19 18 22 22 C 1.40399 * 120.94366 * 0.02562 * 18 17 16 23 23 C 1.52420 * 121.91767 * 179.97438 * 21 20 19 24 24 C 1.53182 * 108.14753 * 343.35815 * 23 21 20 25 25 O 1.43057 * 109.24599 * 48.95991 * 24 23 21 26 26 C 1.43081 * 113.73595 * 288.88648 * 25 24 23 27 27 C 1.47965 * 110.99841 * 70.64385 * 10 9 7 28 28 H 0.97001 * 119.99695 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47134 * 60.00741 * 9 7 2 30 30 H 1.09000 * 109.47392 * 300.00647 * 9 7 2 31 31 H 1.09003 * 113.76320 * 108.10545 * 11 10 9 32 32 H 1.08993 * 113.76238 * 336.73710 * 11 10 9 33 33 H 1.08998 * 113.73752 * 269.25610 * 12 11 10 34 34 H 1.08002 * 117.99900 * 179.97438 * 16 15 14 35 35 H 1.08999 * 109.72843 * 103.01935 * 23 21 20 36 36 H 1.09002 * 109.72933 * 223.65165 * 23 21 20 37 37 H 1.09009 * 109.50464 * 168.88726 * 24 23 21 38 38 H 1.08995 * 109.51138 * 288.98137 * 24 23 21 39 39 H 1.09001 * 109.62836 * 290.98838 * 26 25 24 40 40 H 1.09001 * 109.65154 * 170.36798 * 26 25 24 41 41 H 1.08994 * 113.75714 * 23.26526 * 27 10 9 42 42 H 1.08999 * 113.75959 * 251.90369 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5162 -4.9027 0.2393 12 6 2.6927 -5.2412 1.1724 13 8 2.2967 -5.8746 2.3907 14 6 3.1799 -6.7347 2.9519 15 7 4.3668 -6.9884 2.4055 16 6 5.2386 -7.8214 2.9373 17 7 5.0334 -8.4890 4.0592 18 6 3.8641 -8.2992 4.6841 19 16 3.2724 -9.0100 6.1645 20 6 1.7547 -8.1330 6.0643 21 6 1.7087 -7.3533 4.9753 22 6 2.8995 -7.4237 4.1605 23 6 0.4963 -6.4869 4.6551 24 6 -0.6848 -6.9919 5.4898 25 8 -0.2723 -7.1352 6.8521 26 6 0.6230 -8.2297 7.0706 27 6 2.8981 -3.7212 1.3028 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6246 -2.5570 0.8896 31 1 1.4576 -5.5406 -0.6427 32 1 0.5617 -4.8001 0.7554 33 1 3.5143 -5.7555 0.6738 34 1 6.1781 -7.9674 2.4250 35 1 0.7088 -5.4484 4.9089 36 1 0.2580 -6.5651 3.5943 37 1 -1.5045 -6.2757 5.4312 38 1 -1.0160 -7.9566 5.1057 39 1 0.0908 -9.1711 6.9340 40 1 1.0266 -8.1770 8.0818 41 1 2.3478 -3.2730 2.1300 42 1 3.9437 -3.4149 1.2705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233889577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:59 Heat of formation + Delta-G solvation = 2.274937 kcal Electronic energy + Delta-G solvation = -27669.914655 eV Core-core repulsion = 23742.253206 eV Total energy + Delta-G solvation = -3927.661449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40823 -41.11149 -40.22518 -38.77291 -36.70567 -35.06139 -34.18378 -32.41640 -31.76131 -31.02982 -27.71668 -27.24147 -26.91597 -26.22790 -24.51958 -24.23624 -23.52221 -21.18670 -20.58765 -20.13228 -19.15547 -18.58528 -18.10023 -17.37848 -17.31598 -17.25071 -16.90056 -16.50541 -16.26771 -15.95092 -15.72341 -15.36330 -15.31157 -14.76820 -14.72528 -14.35323 -14.09304 -13.97259 -13.83226 -13.78749 -13.39680 -13.18281 -12.88666 -12.64739 -12.54247 -12.48787 -12.28913 -12.05014 -12.00285 -11.68443 -11.62998 -11.26746 -11.04469 -10.85754 -10.69603 -10.63728 -9.90146 -9.74807 -9.05325 -8.27032 -6.37481 -0.78847 -0.32256 -0.05010 0.57953 0.85128 1.38699 1.39752 1.49511 1.51916 2.36427 2.43653 2.72712 2.77541 3.05320 3.08723 3.21977 3.27509 3.30902 3.35263 3.73641 3.86621 3.90757 3.97007 4.13136 4.21503 4.31468 4.37550 4.42245 4.54284 4.60828 4.62496 4.63673 4.74356 4.85197 4.85943 4.89919 4.94154 5.08188 5.20304 5.45109 5.45799 5.70201 5.90900 6.00567 6.01433 6.28500 6.76310 6.79902 7.32367 8.84589 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.013293 B = 0.002801 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.850959 B = 9993.389610 C =11253.988017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.179 3.821 10 N -0.483 5.483 11 C 0.007 3.993 12 C 0.071 3.929 13 O -0.277 6.277 14 C 0.416 3.584 15 N -0.595 5.595 16 C 0.343 3.657 17 N -0.504 5.504 18 C 0.071 3.929 19 S 0.246 5.754 20 C -0.235 4.235 21 C -0.067 4.067 22 C -0.208 4.208 23 C -0.091 4.091 24 C 0.062 3.938 25 O -0.385 6.385 26 C 0.134 3.866 27 C 0.011 3.989 28 H 0.266 0.734 29 H 0.010 0.990 30 H -0.021 1.021 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.238 0.762 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.131 0.869 41 H 0.059 0.941 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.539 -22.187 14.031 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.078 0.922 9 C 0.052 3.948 10 N -0.207 5.207 11 C -0.122 4.122 12 C 0.014 3.986 13 O -0.178 6.178 14 C 0.223 3.777 15 N -0.328 5.328 16 C 0.052 3.948 17 N -0.226 5.226 18 C -0.179 4.179 19 S 0.507 5.493 20 C -0.351 4.351 21 C -0.079 4.079 22 C -0.223 4.223 23 C -0.131 4.131 24 C -0.015 4.015 25 O -0.304 6.304 26 C 0.056 3.944 27 C -0.118 4.118 28 H 0.075 0.925 29 H 0.028 0.972 30 H -0.003 1.003 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.153 0.847 34 H 0.254 0.746 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.149 0.851 41 H 0.077 0.923 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.824 -22.962 14.319 27.487 hybrid contribution -1.248 2.296 -0.740 2.716 sum 3.576 -20.666 13.578 24.984 Atomic orbital electron populations 1.70064 1.07610 1.28086 1.51221 1.25883 0.95780 1.03149 0.94516 0.85399 0.78523 0.78274 0.78561 1.19698 1.20524 1.19061 1.21380 0.93526 0.91198 1.50915 0.92219 1.19875 0.90795 0.89604 0.94477 1.68509 1.21094 1.02158 1.28954 1.24323 0.96100 0.93206 0.98548 1.24827 0.99848 0.91777 0.82114 1.86393 1.39274 1.52387 1.39761 1.20276 0.86365 0.84356 0.86750 1.67616 1.03851 1.23519 1.37842 1.25525 0.97457 0.84064 0.87718 1.69903 1.16472 1.26034 1.10174 1.24284 0.93930 0.97803 1.01910 1.83614 1.06525 1.43683 1.15527 1.25786 1.02470 1.04597 1.02232 1.20056 0.95003 0.99242 0.93577 1.19746 0.98611 1.05466 0.98442 1.21263 0.91743 0.98170 1.01891 1.22763 0.95390 1.02516 0.80797 1.88069 1.63472 1.51488 1.27336 1.21645 0.85051 0.91234 0.96491 1.24155 1.01298 0.93813 0.92570 0.92488 0.97163 1.00327 0.86762 0.91033 0.84697 0.74603 0.90575 0.89040 0.86560 0.90776 0.88172 0.85109 0.92294 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.53 -30.22 8.84 25.60 0.23 -29.99 16 8 H 0.06 3.35 7.80 -2.91 -0.02 3.33 16 9 C 0.18 9.47 4.58 85.56 0.39 9.86 16 10 N -0.48 -20.69 6.25 -916.38 -5.73 -26.42 16 11 C 0.01 0.23 7.81 86.41 0.67 0.91 16 12 C 0.07 2.23 4.41 31.24 0.14 2.36 16 13 O -0.28 -8.44 8.56 -87.40 -0.75 -9.19 16 14 C 0.42 12.04 7.71 85.41 0.66 12.70 16 15 N -0.60 -15.93 8.80 -310.27 -2.73 -18.66 16 16 C 0.34 7.61 12.14 180.78 2.20 9.81 16 17 N -0.50 -12.20 10.75 -196.06 -2.11 -14.31 16 18 C 0.07 1.76 7.50 84.90 0.64 2.40 16 19 S 0.25 4.34 23.17 -56.49 -1.31 3.03 16 20 C -0.23 -4.41 6.39 25.06 0.16 -4.25 16 21 C -0.07 -1.60 5.99 -18.69 -0.11 -1.71 16 22 C -0.21 -5.62 6.00 -20.26 -0.12 -5.74 16 23 C -0.09 -2.04 5.66 30.46 0.17 -1.87 16 24 C 0.06 1.06 6.78 72.04 0.49 1.54 16 25 O -0.39 -7.23 10.77 -148.98 -1.61 -8.83 16 26 C 0.13 1.82 7.21 71.57 0.52 2.34 16 27 C 0.01 0.41 7.29 86.40 0.63 1.05 16 28 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.01 0.58 8.14 -2.38 -0.02 0.57 16 30 H -0.02 -1.18 7.69 -2.39 -0.02 -1.20 16 31 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.07 2.48 7.79 -2.39 -0.02 2.46 16 33 H 0.14 3.99 7.00 -2.39 -0.02 3.97 16 34 H 0.24 3.18 8.06 -2.91 -0.02 3.15 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 2.11 7.37 -2.39 -0.02 2.09 16 37 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 2.47 7.78 -2.39 -0.02 2.45 16 42 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -69.15 363.07 -3.74 -72.89 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.06 Total: 10.21 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 7.12 Total: 0.18 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -10.28 Total: -114.52 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -2.35 Total: -18.02 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.31 Total: 3.03 kcal Total: -69.15 -3.74 -72.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233889577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.166 kcal (2) G-P(sol) polarization free energy of solvation -69.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds