Wall clock time and date at job start Wed Apr 1 2020 04:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47137 * 269.99883 * 3 2 1 5 5 H 1.48503 * 109.46884 * 30.00012 * 3 2 1 6 6 H 1.48502 * 109.47201 * 149.99512 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21633 * 120.00238 * 359.72097 * 14 13 12 16 16 C 1.47272 * 119.99829 * 179.72406 * 14 13 12 17 17 C 1.35076 * 122.43045 * 179.73232 * 16 14 13 18 18 S 1.71002 * 109.14425 * 179.89926 * 17 16 14 19 19 C 1.75995 * 90.59173 * 0.30187 * 18 17 16 20 20 C 1.47873 * 125.31836 * 179.84447 * 19 18 17 21 21 C 1.46845 * 127.14658 * 359.68572 * 20 19 18 22 22 C 1.34306 * 106.01161 * 179.83464 * 21 20 19 23 23 O 1.34170 * 109.04988 * 0.43073 * 22 21 20 24 24 C 1.34002 * 110.80331 * 359.71345 * 23 22 21 25 25 N 1.29879 * 109.36365 * 359.82349 * 19 18 17 26 26 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 27 27 C 1.52999 * 117.50225 * 8.74581 * 26 10 9 28 28 C 1.52999 * 117.49761 * 300.08359 * 26 10 9 29 29 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 31 31 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 32 32 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 34 34 H 1.07999 * 125.42683 * 0.02562 * 17 16 14 35 35 H 1.08005 * 126.99713 * 359.97438 * 21 20 19 36 36 H 1.08006 * 125.47358 * 180.11263 * 22 21 20 37 37 H 1.07995 * 125.79158 * 179.97438 * 24 23 22 38 38 H 1.09006 * 115.55266 * 154.41988 * 26 10 9 39 39 H 1.08993 * 117.49781 * 359.97438 * 27 26 10 40 40 H 1.09000 * 117.50138 * 145.02405 * 27 26 10 41 41 H 1.09009 * 117.50018 * 214.98040 * 28 26 10 42 42 H 1.08997 * 117.49907 * 0.02562 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.3999 -6.2248 -2.2225 16 6 -0.5108 -4.7254 -4.0055 17 6 -1.3019 -5.4999 -4.7794 18 16 -1.6201 -4.6848 -6.2486 19 6 -0.6387 -3.3207 -5.7256 20 6 -0.3908 -2.0940 -6.5133 21 6 -0.8979 -1.7850 -7.8563 22 6 -0.4197 -0.5677 -8.1618 23 8 0.3293 -0.1227 -7.1414 24 6 0.3594 -1.0198 -6.1465 25 7 -0.1665 -3.5597 -4.5395 26 6 2.4207 -4.0350 1.4391 27 6 1.8113 -3.1975 2.5652 28 6 3.2977 -3.0593 2.2264 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 0.3131 -4.9200 0.0295 32 1 1.7562 -5.6749 -0.6890 33 1 1.0081 -3.4761 -2.2960 34 1 -1.6757 -6.4772 -4.5120 35 1 -1.5291 -2.4086 -8.4721 36 1 -0.6038 -0.0351 -9.0832 37 1 0.8895 -0.9091 -5.2121 38 1 2.5619 -5.1000 1.6237 39 1 1.1523 -2.3769 2.2820 40 1 1.5519 -3.7114 3.4908 41 1 4.0155 -3.4823 2.9293 42 1 3.6158 -2.1478 1.7204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265374274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:11 Heat of formation + Delta-G solvation = 66.077898 kcal Electronic energy + Delta-G solvation = -27302.965123 eV Core-core repulsion = 23378.070378 eV Total energy + Delta-G solvation = -3924.894745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.56452 -40.26224 -38.49856 -37.48522 -34.48503 -33.58926 -33.21780 -30.97499 -30.71389 -29.19740 -28.31342 -25.88252 -24.09328 -23.27923 -22.06591 -21.85951 -21.42934 -20.36926 -19.44793 -18.97037 -18.62390 -17.55182 -17.24367 -16.49453 -16.16668 -15.61342 -15.39403 -15.18583 -14.96356 -14.57302 -14.31485 -14.05053 -13.73649 -13.39007 -13.35309 -13.13643 -13.03468 -12.83421 -12.37484 -12.03510 -11.98962 -11.27701 -11.15634 -10.88210 -10.82815 -10.59610 -10.51003 -10.11306 -10.03146 -9.84930 -9.65668 -9.64648 -9.44424 -9.21346 -9.15223 -8.96107 -8.63924 -8.28261 -7.04331 -5.80772 -3.10872 0.27372 1.08275 1.50378 1.56014 1.86127 2.71088 2.88094 3.39572 3.46176 3.47455 3.51090 3.62919 3.85440 4.51434 4.62268 4.64109 4.66669 4.95327 5.14191 5.23812 5.30813 5.39273 5.49740 5.51877 5.59460 5.75448 5.85110 5.88996 5.96005 5.99641 6.07212 6.08071 6.10760 6.40237 6.47806 6.66667 6.76116 6.87264 6.90484 7.02289 7.29841 7.39606 7.67599 7.99096 8.35671 8.52639 9.48181 10.02048 10.38384 11.40578 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.003791 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.378645 B = 7385.104241 C =10097.435238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.192 3.808 11 H 0.057 0.943 12 C 0.117 3.883 13 N -0.690 5.690 14 C 0.587 3.413 15 O -0.550 6.550 16 C 0.026 3.974 17 C -0.224 4.224 18 S 0.164 5.836 19 C 0.137 3.863 20 C -0.144 4.144 21 C -0.198 4.198 22 C -0.032 4.032 23 O -0.175 6.175 24 C 0.050 3.950 25 N -0.434 5.434 26 C -0.177 4.177 27 C -0.163 4.163 28 C -0.175 4.175 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.420 0.580 34 H 0.190 0.810 35 H 0.155 0.845 36 H 0.207 0.793 37 H 0.221 0.779 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -6.723 -15.561 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.007 4.007 13 N -0.341 5.341 14 C 0.369 3.631 15 O -0.429 6.429 16 C -0.110 4.110 17 C -0.366 4.366 18 S 0.422 5.578 19 C -0.140 4.140 20 C -0.149 4.149 21 C -0.219 4.219 22 C -0.098 4.098 23 O -0.069 6.069 24 C -0.024 4.024 25 N -0.149 5.149 26 C -0.199 4.199 27 C -0.200 4.200 28 C -0.212 4.212 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.258 0.742 34 H 0.207 0.793 35 H 0.173 0.827 36 H 0.224 0.776 37 H 0.238 0.762 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.730 -6.965 -15.836 17.386 hybrid contribution 0.346 0.767 0.882 1.219 sum -1.384 -6.199 -14.953 16.246 Atomic orbital electron populations 1.69660 1.05002 1.25638 1.57120 1.24692 0.95368 0.97450 1.02816 0.86292 0.78752 0.84251 0.77487 1.21769 1.21927 1.20808 1.19145 0.90853 0.83784 1.43170 0.91101 1.42461 1.05840 0.99454 1.88042 1.19983 0.94090 0.86057 0.91729 0.92470 1.21664 0.98954 0.97610 0.82488 1.45827 1.48820 1.22008 1.17431 1.17101 0.78930 0.84192 0.82852 1.90774 1.58227 1.22485 1.71434 1.20203 1.01868 0.90719 0.98189 1.26422 1.04819 1.06819 0.98494 1.83653 1.47338 1.10636 1.16132 1.24778 0.99106 0.97172 0.92907 1.19015 1.06871 0.93692 0.95331 1.22717 1.05779 0.98040 0.95339 1.23884 0.97039 0.95918 0.92957 1.83956 1.56588 1.42802 1.23593 1.24592 0.98933 0.86497 0.92378 1.67062 1.22518 1.17060 1.08222 1.23064 1.06010 0.95330 0.95506 1.22913 0.96707 1.03525 0.96843 1.22851 0.93477 1.01885 1.02997 0.93515 0.77914 0.91445 0.91622 0.74226 0.79299 0.82731 0.77625 0.76238 0.89622 0.86322 0.91315 0.91051 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -5.97 8.15 -15.06 -0.12 -6.09 16 8 H 0.07 1.75 6.91 -52.48 -0.36 1.39 16 9 N -0.72 -16.16 3.08 -53.42 -0.16 -16.32 16 10 C 0.19 3.60 2.86 -67.93 -0.19 3.41 16 11 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 12 C 0.12 2.06 5.22 -4.04 -0.02 2.04 16 13 N -0.69 -12.52 5.38 -61.43 -0.33 -12.85 16 14 C 0.59 10.74 7.79 -12.59 -0.10 10.64 16 15 O -0.55 -11.02 16.65 5.25 0.09 -10.93 16 16 C 0.03 0.42 6.64 -84.92 -0.56 -0.14 16 17 C -0.22 -2.99 10.56 29.61 0.31 -2.68 16 18 S 0.16 1.77 23.07 -107.50 -2.48 -0.71 16 19 C 0.14 1.88 7.46 -14.44 -0.11 1.77 16 20 C -0.14 -1.78 6.32 -103.25 -0.65 -2.43 16 21 C -0.20 -1.85 11.04 -37.49 -0.41 -2.26 16 22 C -0.03 -0.26 12.04 29.35 0.35 0.09 16 23 O -0.17 -1.96 10.54 6.87 0.07 -1.88 16 24 C 0.05 0.61 12.05 29.95 0.36 0.97 16 25 N -0.43 -6.99 10.03 -8.11 -0.08 -7.07 16 26 C -0.18 -3.12 5.70 -90.62 -0.52 -3.64 16 27 C -0.16 -3.07 9.74 -26.69 -0.26 -3.33 16 28 C -0.18 -3.15 9.87 -26.69 -0.26 -3.41 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.39 9.67 7.80 -40.82 -0.32 9.35 16 31 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.42 7.98 7.61 -40.82 -0.31 7.67 16 34 H 0.19 2.25 7.99 -52.49 -0.42 1.83 16 35 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.21 0.85 8.06 -52.48 -0.42 0.42 16 37 H 0.22 2.68 8.06 -52.49 -0.42 2.26 16 38 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 39 H 0.12 2.68 6.68 -51.93 -0.35 2.33 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 42 H 0.10 2.07 6.22 -51.93 -0.32 1.74 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -30.33 378.10 -8.80 -39.13 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -5.02 Total: 19.58 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.28 Total: -5.33 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.15 Total: -61.91 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.16 Total: -12.81 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.48 Total: -0.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.33 -8.80 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265374274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.208 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds