Wall clock time and date at job start Wed Apr 1 2020 04:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47137 * 269.99883 * 3 2 1 5 5 H 1.48503 * 109.46884 * 30.00012 * 3 2 1 6 6 H 1.48502 * 109.47201 * 149.99512 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21633 * 120.00238 * 359.72097 * 14 13 12 16 16 C 1.47272 * 119.99829 * 179.72406 * 14 13 12 17 17 C 1.35076 * 122.43045 * 179.73232 * 16 14 13 18 18 S 1.71002 * 109.14425 * 179.89926 * 17 16 14 19 19 C 1.75995 * 90.59173 * 0.30187 * 18 17 16 20 20 C 1.47873 * 125.31836 * 179.84447 * 19 18 17 21 21 C 1.46845 * 127.14658 * 359.68572 * 20 19 18 22 22 C 1.34306 * 106.01161 * 179.83464 * 21 20 19 23 23 O 1.34170 * 109.04988 * 0.43073 * 22 21 20 24 24 C 1.34002 * 110.80331 * 359.71345 * 23 22 21 25 25 N 1.29879 * 109.36365 * 359.82349 * 19 18 17 26 26 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 27 27 C 1.52999 * 117.50225 * 8.74581 * 26 10 9 28 28 C 1.52999 * 117.49761 * 300.08359 * 26 10 9 29 29 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 31 31 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 32 32 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 34 34 H 1.07999 * 125.42683 * 0.02562 * 17 16 14 35 35 H 1.08005 * 126.99713 * 359.97438 * 21 20 19 36 36 H 1.08006 * 125.47358 * 180.11263 * 22 21 20 37 37 H 1.07995 * 125.79158 * 179.97438 * 24 23 22 38 38 H 1.09006 * 115.55266 * 154.41988 * 26 10 9 39 39 H 1.08993 * 117.49781 * 359.97438 * 27 26 10 40 40 H 1.09000 * 117.50138 * 145.02405 * 27 26 10 41 41 H 1.09009 * 117.50018 * 214.98040 * 28 26 10 42 42 H 1.08997 * 117.49907 * 0.02562 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.3999 -6.2248 -2.2225 16 6 -0.5108 -4.7254 -4.0055 17 6 -1.3019 -5.4999 -4.7794 18 16 -1.6201 -4.6848 -6.2486 19 6 -0.6387 -3.3207 -5.7256 20 6 -0.3908 -2.0940 -6.5133 21 6 -0.8979 -1.7850 -7.8563 22 6 -0.4197 -0.5677 -8.1618 23 8 0.3293 -0.1227 -7.1414 24 6 0.3594 -1.0198 -6.1465 25 7 -0.1665 -3.5597 -4.5395 26 6 2.4207 -4.0350 1.4391 27 6 1.8113 -3.1975 2.5652 28 6 3.2977 -3.0593 2.2264 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 0.3131 -4.9200 0.0295 32 1 1.7562 -5.6749 -0.6890 33 1 1.0081 -3.4761 -2.2960 34 1 -1.6757 -6.4772 -4.5120 35 1 -1.5291 -2.4086 -8.4721 36 1 -0.6038 -0.0351 -9.0832 37 1 0.8895 -0.9091 -5.2121 38 1 2.5619 -5.1000 1.6237 39 1 1.1523 -2.3769 2.2820 40 1 1.5519 -3.7114 3.4908 41 1 4.0155 -3.4823 2.9293 42 1 3.6158 -2.1478 1.7204 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265374274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:10 Heat of formation + Delta-G solvation = 46.512161 kcal Electronic energy + Delta-G solvation = -27303.813557 eV Core-core repulsion = 23378.070378 eV Total energy + Delta-G solvation = -3925.743179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.36672 -41.49840 -39.84032 -38.99982 -35.96322 -35.06779 -34.47103 -32.63045 -31.73720 -30.15675 -29.93416 -27.07372 -25.64408 -24.86661 -23.44135 -22.88300 -22.61501 -21.56546 -20.76842 -20.14175 -19.77557 -19.15724 -18.46487 -17.77244 -17.02946 -16.91881 -16.84589 -16.43580 -16.28647 -16.15204 -15.61116 -15.50320 -15.01605 -14.97839 -14.53609 -14.45233 -14.21344 -13.81870 -13.69201 -13.21439 -13.03985 -12.94579 -12.86209 -12.66708 -12.59211 -12.12636 -11.95339 -11.59747 -11.56271 -11.36672 -11.02632 -10.97189 -10.82889 -10.61969 -10.59998 -10.15077 -9.94757 -9.24939 -8.98582 -7.86885 -5.14645 -0.75471 0.11477 0.46687 0.49400 1.04979 1.48746 1.50032 1.56757 1.72307 2.09932 2.23106 2.35867 2.58894 2.81665 3.14024 3.47884 3.67494 3.83932 3.86677 3.97004 4.04020 4.13308 4.19176 4.28090 4.33035 4.48357 4.53566 4.58578 4.64078 4.76511 4.85916 4.91906 4.97397 5.10594 5.17540 5.23129 5.39984 5.41100 5.49865 5.66952 5.69716 6.07448 6.29045 6.32101 6.59805 7.09246 7.40566 8.10877 8.36668 9.35525 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.003791 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.378645 B = 7385.104241 C =10097.435238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.217 4.217 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.193 3.807 11 H 0.058 0.942 12 C 0.125 3.875 13 N -0.694 5.694 14 C 0.584 3.416 15 O -0.574 6.574 16 C -0.008 4.008 17 C -0.227 4.227 18 S 0.268 5.732 19 C 0.111 3.889 20 C -0.158 4.158 21 C -0.205 4.205 22 C -0.019 4.019 23 O -0.186 6.186 24 C 0.025 3.975 25 N -0.466 5.466 26 C -0.168 4.168 27 C -0.172 4.172 28 C -0.169 4.169 29 H 0.246 0.754 30 H 0.373 0.627 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.414 0.586 34 H 0.203 0.797 35 H 0.183 0.817 36 H 0.252 0.748 37 H 0.207 0.793 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 -7.903 -17.469 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.258 4.258 3 Si 0.787 3.213 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.349 4.349 8 H 0.093 0.907 9 N -0.359 5.359 10 C 0.084 3.916 11 H 0.076 0.924 12 C 0.001 3.999 13 N -0.343 5.343 14 C 0.368 3.632 15 O -0.455 6.455 16 C -0.143 4.143 17 C -0.369 4.369 18 S 0.528 5.472 19 C -0.165 4.165 20 C -0.163 4.163 21 C -0.225 4.225 22 C -0.085 4.085 23 O -0.081 6.081 24 C -0.049 4.049 25 N -0.182 5.182 26 C -0.189 4.189 27 C -0.210 4.210 28 C -0.206 4.206 29 H 0.055 0.945 30 H 0.205 0.795 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.251 0.749 34 H 0.220 0.780 35 H 0.200 0.800 36 H 0.267 0.733 37 H 0.223 0.777 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.401 -8.170 -17.756 19.595 hybrid contribution 0.233 1.051 1.356 1.731 sum -1.168 -7.119 -16.400 17.916 Atomic orbital electron populations 1.69811 1.06359 1.25418 1.59881 1.25296 0.95941 1.00180 1.04338 0.85397 0.77817 0.80913 0.77196 1.21716 1.23152 1.19748 1.19397 0.91021 0.84540 1.39944 0.90658 1.42506 1.05187 1.00323 1.87929 1.20115 0.93810 0.84802 0.92910 0.92412 1.21599 0.98421 0.97742 0.82143 1.45855 1.49068 1.21788 1.17592 1.17433 0.78326 0.83757 0.83654 1.90737 1.59141 1.23304 1.72314 1.19999 1.04302 0.91993 0.98037 1.26788 1.03301 1.07210 0.99646 1.83203 1.44196 1.07063 1.12786 1.25140 0.99801 0.98822 0.92741 1.19316 1.07145 0.93185 0.96702 1.23040 1.06437 0.98876 0.94106 1.24817 0.94860 0.95767 0.93036 1.83950 1.57303 1.42827 1.24048 1.24452 1.00166 0.87456 0.92854 1.67012 1.23960 1.17489 1.09758 1.23032 1.05160 0.96881 0.93817 1.22772 0.96752 1.03044 0.98400 1.22840 0.93393 1.01090 1.03256 0.94524 0.79521 0.92556 0.89650 0.74892 0.78005 0.80001 0.73254 0.77656 0.86467 0.90511 0.88995 0.87927 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.22 13.06 21.65 0.28 -56.94 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 3 Si 0.96 45.12 29.55 68.60 2.03 47.15 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.22 -11.11 8.15 84.04 0.69 -10.42 16 8 H 0.08 3.75 6.91 -2.91 -0.02 3.73 16 9 N -0.72 -33.40 3.08 -322.94 -0.99 -34.39 16 10 C 0.19 7.21 2.86 44.99 0.13 7.34 16 11 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 12 C 0.13 4.40 5.22 86.38 0.45 4.85 16 13 N -0.69 -25.92 5.38 -466.49 -2.51 -28.43 16 14 C 0.58 21.88 7.79 86.62 0.67 22.56 16 15 O -0.57 -23.22 16.65 -4.14 -0.07 -23.29 16 16 C -0.01 -0.25 6.64 40.65 0.27 0.02 16 17 C -0.23 -5.82 10.56 67.09 0.71 -5.11 16 18 S 0.27 5.16 23.07 -56.49 -1.30 3.86 16 19 C 0.11 3.00 7.46 87.53 0.65 3.65 16 20 C -0.16 -3.85 6.32 -18.98 -0.12 -3.97 16 21 C -0.20 -3.32 11.04 23.63 0.26 -3.06 16 22 C -0.02 -0.27 12.04 66.92 0.81 0.53 16 23 O -0.19 -4.09 10.54 1.66 0.02 -4.07 16 24 C 0.02 0.63 12.05 67.31 0.81 1.44 16 25 N -0.47 -15.47 10.03 -179.57 -1.80 -17.27 16 26 C -0.17 -5.64 5.70 -10.80 -0.06 -5.70 16 27 C -0.17 -6.39 9.74 30.62 0.30 -6.09 16 28 C -0.17 -5.79 9.87 30.62 0.30 -5.49 16 29 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.37 19.48 7.80 -92.71 -0.72 18.76 16 31 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.41 16.52 7.61 -92.71 -0.71 15.81 16 34 H 0.20 4.51 7.99 -2.91 -0.02 4.48 16 35 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.25 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.21 5.63 8.06 -2.91 -0.02 5.61 16 38 H 0.12 3.28 8.11 -2.38 -0.02 3.26 16 39 H 0.08 3.56 6.68 -2.39 -0.02 3.54 16 40 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 42 H 0.08 3.07 6.22 -2.39 -0.01 3.06 16 Total: -1.00 -68.62 378.10 1.64 -66.98 By element: Atomic # 1 Polarization: 49.31 SS G_CDS: -0.34 Total: 48.97 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 6.33 Total: -2.56 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -5.02 Total: -137.04 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.35 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.30 Total: 3.86 kcal Total: -68.62 1.64 -66.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265374274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.488 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds