Wall clock time and date at job start Wed Apr 1 2020 04:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 O 1.21277 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99464 * 179.97438 * 10 9 7 13 13 C 1.47099 * 120.96135 * 179.71480 * 12 10 9 14 14 C 1.53816 * 108.91711 * 116.65200 * 13 12 10 15 15 N 1.46215 * 109.17077 * 45.71280 * 14 13 12 16 16 C 1.35007 * 125.39144 * 341.40021 * 15 14 13 17 17 N 1.30369 * 107.83316 * 180.66562 * 16 15 14 18 18 N 1.28881 * 109.74726 * 359.71985 * 17 16 15 19 19 C 1.31903 * 109.51909 * 0.06943 * 18 17 16 20 20 C 1.47376 * 126.62641 * 180.20203 * 19 18 17 21 21 O 1.21603 * 120.00296 * 179.97438 * 20 19 18 22 22 N 1.34776 * 119.99990 * 359.95500 * 20 19 18 23 23 C 1.38579 * 119.99877 * 179.97438 * 22 20 19 24 24 N 1.31006 * 126.36502 * 359.69194 * 23 22 20 25 25 N 1.28659 * 109.31488 * 179.88667 * 24 23 22 26 26 C 1.30133 * 109.52472 * 0.38270 * 25 24 23 27 27 O 1.34583 * 126.36066 * 180.02562 * 23 22 20 28 28 C 1.47503 * 120.96841 * 359.97438 * 12 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.08999 * 109.52033 * 236.56820 * 13 12 10 33 33 H 1.09000 * 109.51857 * 356.74766 * 13 12 10 34 34 H 1.08996 * 109.63240 * 285.74122 * 14 13 12 35 35 H 1.09003 * 109.47319 * 165.58417 * 14 13 12 36 36 H 0.97002 * 120.00135 * 0.02562 * 22 20 19 37 37 H 1.08002 * 126.21941 * 179.76889 * 26 25 24 38 38 H 1.08997 * 109.95274 * 342.44247 * 28 12 10 39 39 H 1.09002 * 109.95275 * 103.61183 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 8 3.4226 -3.4231 -0.0097 12 7 1.7808 -4.9153 -0.0155 13 6 2.7177 -6.0493 -0.0268 14 6 2.5385 -6.8570 1.2699 15 7 1.1115 -7.0570 1.5177 16 6 0.1133 -6.3352 0.9652 17 7 -1.0152 -6.7920 1.4316 18 7 -0.7880 -7.7665 2.2439 19 6 0.5118 -7.9733 2.3316 20 6 1.1860 -8.9969 3.1499 21 8 2.3990 -9.0816 3.1397 22 7 0.4581 -9.8390 3.9099 23 6 1.0921 -10.8018 4.6790 24 7 2.3836 -11.0073 4.7568 25 7 2.6117 -11.9799 5.5676 26 6 1.4833 -12.4351 6.0291 27 8 0.4950 -11.7037 5.4798 28 6 0.3354 -5.2091 -0.0159 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.5091 -6.6855 -0.8868 33 1 3.7401 -5.6764 -0.0879 34 1 2.9803 -6.3126 2.1045 35 1 3.0292 -7.8248 1.1659 36 1 -0.5095 -9.7716 3.9180 37 1 1.3616 -13.2514 6.7257 38 1 -0.2235 -4.3273 0.2974 39 1 0.0182 -5.5152 -1.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269023052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:13 Heat of formation + Delta-G solvation = 90.629611 kcal Electronic energy + Delta-G solvation = -29473.546666 eV Core-core repulsion = 25035.716099 eV Total energy + Delta-G solvation = -4437.830567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.68398 -43.70505 -40.47797 -39.44624 -36.80447 -36.67998 -35.93508 -34.39418 -33.09962 -31.99143 -31.03143 -30.38729 -28.84210 -26.93897 -25.54439 -24.77831 -24.43948 -23.51735 -23.09236 -21.33193 -20.95526 -19.55259 -18.68448 -18.28246 -18.05486 -17.37203 -17.27631 -17.10549 -16.60800 -16.08290 -15.77050 -15.59399 -15.38532 -15.21663 -15.03343 -14.56086 -14.21933 -13.62113 -13.19114 -12.92003 -12.82522 -12.68510 -12.31655 -12.30899 -12.14285 -12.11966 -11.85921 -11.53146 -11.38406 -11.26021 -10.89864 -10.85732 -10.73179 -10.54376 -10.07824 -9.74223 -9.44710 -9.38487 -9.01629 -8.75494 -8.52969 -6.16484 -4.17464 0.30205 0.67967 0.91548 1.87114 1.92606 2.12598 2.63811 2.70068 2.96147 3.23499 3.31087 3.32836 3.34417 3.39807 3.85066 3.98299 4.08465 4.24357 4.38328 4.49422 4.53112 4.69171 4.78592 5.08562 5.17797 5.21889 5.24012 5.32270 5.38072 5.43152 5.49744 5.55720 5.82263 6.15553 6.20972 6.45675 6.94194 6.98587 7.11019 7.50665 7.85333 7.88549 8.07888 8.13056 8.79257 8.92621 9.48278 10.95387 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.002156 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.732144 B =12986.889632 C =13270.019536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.525 3.475 11 O -0.528 6.528 12 N -0.641 5.641 13 C 0.095 3.905 14 C 0.085 3.915 15 N -0.423 5.423 16 C 0.208 3.792 17 N -0.271 5.271 18 N -0.235 5.235 19 C 0.111 3.889 20 C 0.627 3.373 21 O -0.452 6.452 22 N -0.597 5.597 23 C 0.393 3.607 24 N -0.266 5.266 25 N -0.274 5.274 26 C 0.141 3.859 27 O -0.236 6.236 28 C 0.197 3.803 29 H 0.264 0.736 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.440 0.560 37 H 0.270 0.730 38 H 0.137 0.863 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 -24.441 6.869 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.093 0.907 9 C -0.033 4.033 10 C 0.318 3.682 11 O -0.401 6.401 12 N -0.380 5.380 13 C -0.028 4.028 14 C -0.038 4.038 15 N -0.112 5.112 16 C -0.060 4.060 17 N -0.116 5.116 18 N -0.085 5.085 19 C -0.155 4.155 20 C 0.410 3.590 21 O -0.316 6.316 22 N -0.255 5.255 23 C 0.093 3.907 24 N -0.122 5.122 25 N -0.119 5.119 26 C -0.091 4.091 27 O -0.115 6.115 28 C 0.071 3.929 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.281 0.719 37 H 0.285 0.715 38 H 0.155 0.845 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.581 -24.177 6.844 25.177 hybrid contribution -0.318 0.612 0.287 0.747 sum -1.899 -23.565 7.130 24.694 Atomic orbital electron populations 1.69929 1.06003 1.27312 1.50344 1.24997 0.94947 0.99541 0.94916 0.86463 0.79395 0.82151 0.78903 1.20059 1.21272 1.20106 1.21069 0.94180 0.88920 1.51177 0.90704 1.19329 0.94068 0.90153 0.99711 1.22265 0.91315 0.82306 0.72297 1.90566 1.17937 1.83313 1.48313 1.48740 1.05064 1.06574 1.77587 1.21954 0.98263 0.88135 0.94485 1.22909 0.75673 1.03811 1.01432 1.45831 1.10308 1.23625 1.31434 1.25440 0.83857 0.97476 0.99189 1.74337 1.20924 1.07009 1.09320 1.74800 1.09584 1.10962 1.13130 1.23035 0.90967 0.98687 1.02775 1.15988 0.85698 0.79035 0.78287 1.91040 1.11709 1.67836 1.61002 1.41768 1.12409 1.29317 1.42052 1.23208 0.86797 0.89116 0.91582 1.75334 1.08291 1.12372 1.16193 1.74396 1.24288 1.05797 1.07399 1.29511 0.80121 0.98799 1.00692 1.84825 1.39955 1.38357 1.48346 1.20418 0.83182 0.93840 0.95465 0.92629 0.93123 0.92839 0.90195 0.85905 0.87850 0.86504 0.71920 0.71484 0.84491 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.00 13.29 55.43 0.74 -24.26 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.04 8.92 -34.44 -0.31 -14.35 16 8 H 0.07 2.13 6.75 -52.49 -0.35 1.78 16 9 C 0.01 0.15 3.89 -29.03 -0.11 0.03 16 10 C 0.53 10.61 7.70 -10.99 -0.08 10.52 16 11 O -0.53 -12.29 14.90 5.56 0.08 -12.20 16 12 N -0.64 -9.57 2.96 -173.09 -0.51 -10.08 16 13 C 0.10 1.12 6.47 -3.29 -0.02 1.10 16 14 C 0.08 0.95 6.40 -3.77 -0.02 0.92 16 15 N -0.42 -5.31 3.14 -111.08 -0.35 -5.65 16 16 C 0.21 2.75 7.87 -155.41 -1.22 1.53 16 17 N -0.27 -3.86 12.21 32.76 0.40 -3.46 16 18 N -0.23 -3.07 11.98 32.37 0.39 -2.68 16 19 C 0.11 1.36 7.92 -154.50 -1.22 0.14 16 20 C 0.63 7.20 7.77 -12.54 -0.10 7.10 16 21 O -0.45 -6.25 14.07 5.27 0.07 -6.18 16 22 N -0.60 -5.41 5.38 -13.96 -0.08 -5.49 16 23 C 0.39 3.97 9.08 -86.63 -0.79 3.18 16 24 N -0.27 -3.41 10.46 29.92 0.31 -3.09 16 25 N -0.27 -2.90 12.21 29.46 0.36 -2.55 16 26 C 0.14 0.82 13.37 52.04 0.70 1.52 16 27 O -0.24 -1.74 10.90 3.95 0.04 -1.70 16 28 C 0.20 2.49 6.64 -4.50 -0.03 2.46 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.05 1.19 7.55 -51.93 -0.39 0.80 16 31 H 0.05 1.22 8.13 -51.93 -0.42 0.80 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.12 1.55 7.01 -51.93 -0.36 1.19 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.12 1.13 7.27 -51.93 -0.38 0.76 16 36 H 0.44 2.85 8.54 -40.82 -0.35 2.50 16 37 H 0.27 -0.09 8.06 -52.49 -0.42 -0.52 16 38 H 0.14 1.86 6.26 -51.93 -0.33 1.53 16 39 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -36.14 346.15 -5.07 -41.21 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -3.41 Total: -1.03 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: -3.31 Total: 15.64 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 1.26 Total: -57.27 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.20 Total: -20.08 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.14 -5.07 -41.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.841 kcal (2) G-P(sol) polarization free energy of solvation -36.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds