Wall clock time and date at job start Wed Apr 1 2020 04:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 O 1.21277 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99464 * 179.97438 * 10 9 7 13 13 C 1.47099 * 120.96135 * 179.71480 * 12 10 9 14 14 C 1.53816 * 108.91711 * 116.65200 * 13 12 10 15 15 N 1.46215 * 109.17077 * 45.71280 * 14 13 12 16 16 C 1.35007 * 125.39144 * 341.40021 * 15 14 13 17 17 N 1.30369 * 107.83316 * 180.66562 * 16 15 14 18 18 N 1.28881 * 109.74726 * 359.71985 * 17 16 15 19 19 C 1.31903 * 109.51909 * 0.06943 * 18 17 16 20 20 C 1.47376 * 126.62641 * 180.20203 * 19 18 17 21 21 O 1.21603 * 120.00296 * 179.97438 * 20 19 18 22 22 N 1.34776 * 119.99990 * 359.95500 * 20 19 18 23 23 C 1.38579 * 119.99877 * 179.97438 * 22 20 19 24 24 N 1.31006 * 126.36502 * 359.69194 * 23 22 20 25 25 N 1.28659 * 109.31488 * 179.88667 * 24 23 22 26 26 C 1.30133 * 109.52472 * 0.38270 * 25 24 23 27 27 O 1.34583 * 126.36066 * 180.02562 * 23 22 20 28 28 C 1.47503 * 120.96841 * 359.97438 * 12 10 9 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.08999 * 109.52033 * 236.56820 * 13 12 10 33 33 H 1.09000 * 109.51857 * 356.74766 * 13 12 10 34 34 H 1.08996 * 109.63240 * 285.74122 * 14 13 12 35 35 H 1.09003 * 109.47319 * 165.58417 * 14 13 12 36 36 H 0.97002 * 120.00135 * 0.02562 * 22 20 19 37 37 H 1.08002 * 126.21941 * 179.76889 * 26 25 24 38 38 H 1.08997 * 109.95274 * 342.44247 * 28 12 10 39 39 H 1.09002 * 109.95275 * 103.61183 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 8 3.4226 -3.4231 -0.0097 12 7 1.7808 -4.9153 -0.0155 13 6 2.7177 -6.0493 -0.0268 14 6 2.5385 -6.8570 1.2699 15 7 1.1115 -7.0570 1.5177 16 6 0.1133 -6.3352 0.9652 17 7 -1.0152 -6.7920 1.4316 18 7 -0.7880 -7.7665 2.2439 19 6 0.5118 -7.9733 2.3316 20 6 1.1860 -8.9969 3.1499 21 8 2.3990 -9.0816 3.1397 22 7 0.4581 -9.8390 3.9099 23 6 1.0921 -10.8018 4.6790 24 7 2.3836 -11.0073 4.7568 25 7 2.6117 -11.9799 5.5676 26 6 1.4833 -12.4351 6.0291 27 8 0.4950 -11.7037 5.4798 28 6 0.3354 -5.2091 -0.0159 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.5091 -6.6855 -0.8868 33 1 3.7401 -5.6764 -0.0879 34 1 2.9803 -6.3126 2.1045 35 1 3.0292 -7.8248 1.1659 36 1 -0.5095 -9.7716 3.9180 37 1 1.3616 -13.2514 6.7257 38 1 -0.2235 -4.3273 0.2974 39 1 0.0182 -5.5152 -1.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269023052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:12 Heat of formation + Delta-G solvation = 60.451350 kcal Electronic energy + Delta-G solvation = -29474.855294 eV Core-core repulsion = 25035.716099 eV Total energy + Delta-G solvation = -4439.139194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.34612 -44.72554 -41.37463 -40.87176 -38.03543 -37.37003 -36.82061 -35.55961 -35.09811 -33.01779 -32.12210 -31.36833 -30.45284 -28.07015 -26.49867 -26.25090 -25.08048 -24.63079 -24.30223 -22.19324 -22.14355 -20.42169 -19.82944 -19.25945 -18.76224 -18.62293 -18.22504 -18.09534 -17.91466 -17.55079 -16.91988 -16.70378 -16.48941 -16.22680 -16.17851 -16.00041 -15.26613 -15.02807 -14.55775 -14.27987 -13.96294 -13.79721 -13.60978 -13.29366 -13.22692 -13.02477 -12.94377 -12.91594 -12.74279 -12.58421 -12.34797 -12.10632 -12.02519 -11.85866 -11.54278 -11.43121 -10.79423 -10.64567 -10.60488 -10.19875 -10.00830 -8.24391 -6.31183 -0.56964 -0.08503 0.18842 0.97292 1.00385 1.33143 1.42461 1.43607 1.51888 1.63743 1.71279 1.78396 2.03192 2.42581 2.46079 2.83967 3.11391 3.14251 3.35963 3.49773 3.58077 3.73730 3.81319 3.89926 4.08441 4.19603 4.35103 4.38853 4.52000 4.55081 4.57444 4.60281 4.76421 5.01135 5.17036 5.24813 5.31931 5.44310 5.73650 5.92933 6.15555 6.28578 6.80412 7.04743 7.21762 7.22378 7.38643 8.86784 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.002156 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.732144 B =12986.889632 C =13270.019536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.009 3.991 10 C 0.532 3.468 11 O -0.565 6.565 12 N -0.631 5.631 13 C 0.097 3.903 14 C 0.091 3.909 15 N -0.426 5.426 16 C 0.207 3.793 17 N -0.289 5.289 18 N -0.238 5.238 19 C 0.119 3.881 20 C 0.632 3.368 21 O -0.477 6.477 22 N -0.582 5.582 23 C 0.385 3.615 24 N -0.308 5.308 25 N -0.325 5.325 26 C 0.181 3.819 27 O -0.229 6.229 28 C 0.197 3.803 29 H 0.267 0.733 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.451 0.549 37 H 0.328 0.672 38 H 0.127 0.873 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 -26.273 7.327 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.577 4.577 8 H 0.074 0.926 9 C -0.030 4.030 10 C 0.324 3.676 11 O -0.443 6.443 12 N -0.367 5.367 13 C -0.025 4.025 14 C -0.032 4.032 15 N -0.115 5.115 16 C -0.061 4.061 17 N -0.134 5.134 18 N -0.087 5.087 19 C -0.148 4.148 20 C 0.416 3.584 21 O -0.343 6.343 22 N -0.242 5.242 23 C 0.083 3.917 24 N -0.163 5.163 25 N -0.169 5.169 26 C -0.050 4.050 27 O -0.107 6.107 28 C 0.072 3.928 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.295 0.705 37 H 0.342 0.658 38 H 0.144 0.856 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.268 -26.070 7.315 27.171 hybrid contribution -0.185 0.994 0.262 1.045 sum -2.453 -25.075 7.577 26.310 Atomic orbital electron populations 1.69998 1.06921 1.28144 1.50796 1.25705 0.95805 1.02474 0.94573 0.85592 0.78412 0.78774 0.78808 1.19682 1.20172 1.20104 1.21326 0.93694 0.91192 1.51489 0.92598 1.19133 0.94235 0.90314 0.99288 1.21541 0.89994 0.83558 0.72490 1.90547 1.18950 1.84345 1.50429 1.48444 1.06746 1.05798 1.75714 1.22180 0.97088 0.87131 0.96127 1.22910 0.75132 1.04509 1.00612 1.45932 1.10609 1.23577 1.31419 1.25395 0.83913 0.97532 0.99299 1.74303 1.21541 1.07632 1.09949 1.74769 1.09915 1.10910 1.13149 1.23184 0.90757 0.98491 1.02332 1.15864 0.85337 0.79001 0.78246 1.91033 1.12706 1.68590 1.61985 1.41513 1.12754 1.28634 1.41285 1.23108 0.86572 0.89765 0.92256 1.75240 1.09844 1.13695 1.17495 1.74325 1.26482 1.06883 1.09176 1.30859 0.78497 0.97435 0.98236 1.84876 1.40011 1.37916 1.47892 1.20599 0.81430 0.93500 0.97239 0.92380 0.93893 0.92728 0.86775 0.86616 0.88917 0.84569 0.70538 0.65803 0.85563 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.46 13.29 21.45 0.28 -51.17 16 2 C 0.01 0.76 5.46 84.66 0.46 1.22 16 3 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -29.97 8.92 25.60 0.23 -29.75 16 8 H 0.06 3.27 6.75 -2.91 -0.02 3.25 16 9 C 0.01 0.45 3.89 29.10 0.11 0.56 16 10 C 0.53 21.68 7.70 87.66 0.68 22.36 16 11 O -0.57 -26.82 14.90 -3.02 -0.04 -26.87 16 12 N -0.63 -18.28 2.96 -819.91 -2.43 -20.71 16 13 C 0.10 2.14 6.47 86.54 0.56 2.70 16 14 C 0.09 1.92 6.40 86.71 0.55 2.48 16 15 N -0.43 -10.17 3.14 -505.36 -1.59 -11.76 16 16 C 0.21 5.21 7.87 138.27 1.09 6.30 16 17 N -0.29 -7.95 12.21 -50.27 -0.61 -8.56 16 18 N -0.24 -5.96 11.98 -51.50 -0.62 -6.58 16 19 C 0.12 2.78 7.92 136.26 1.08 3.86 16 20 C 0.63 14.05 7.77 86.65 0.67 14.73 16 21 O -0.48 -13.03 14.07 -4.04 -0.06 -13.09 16 22 N -0.58 -9.98 5.38 -426.37 -2.30 -12.27 16 23 C 0.38 7.33 9.08 178.95 1.62 8.96 16 24 N -0.31 -7.73 10.46 -173.36 -1.81 -9.55 16 25 N -0.33 -6.51 12.21 -175.19 -2.14 -8.65 16 26 C 0.18 1.58 13.37 130.49 1.74 3.32 16 27 O -0.23 -2.82 10.90 -8.77 -0.10 -2.91 16 28 C 0.20 4.74 6.64 85.53 0.57 5.31 16 29 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 30 H 0.04 2.07 7.55 -2.38 -0.02 2.05 16 31 H 0.05 2.52 8.13 -2.39 -0.02 2.50 16 32 H 0.11 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.12 2.82 7.01 -2.39 -0.02 2.81 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.14 2.42 7.27 -2.39 -0.02 2.41 16 36 H 0.45 5.26 8.54 -92.71 -0.79 4.47 16 37 H 0.33 -1.88 8.06 -2.91 -0.02 -1.90 16 38 H 0.13 3.39 6.26 -2.39 -0.01 3.37 16 39 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -80.38 346.15 0.36 -80.02 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 0.37 Total: 4.15 kcal Atomic # 6 Polarization: 32.68 SS G_CDS: 9.37 Total: 42.05 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -11.21 Total: -129.24 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.20 Total: -42.87 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -80.38 0.36 -80.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269023052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.471 kcal (2) G-P(sol) polarization free energy of solvation -80.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds