Wall clock time and date at job start Wed Apr 1 2020 04:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47106 * 240.00111 * 3 2 1 5 5 H 1.48500 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47502 * 119.99702 * 3 2 1 7 7 C 1.37884 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99757 * 0.02562 * 7 2 1 10 10 C 1.53495 * 114.20591 * 179.97438 * 9 7 2 11 11 N 1.47067 * 87.98672 * 220.14643 * 10 9 7 12 12 C 1.34775 * 136.05778 * 207.08335 * 11 10 9 13 13 O 1.21277 * 119.99897 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99667 * 180.02562 * 12 11 10 15 15 C 1.53001 * 120.26339 * 108.96741 * 14 12 11 16 16 C 1.52999 * 60.55787 * 111.47239 * 15 14 12 17 17 H 1.08995 * 120.26324 * 248.51722 * 16 15 14 18 18 C 1.54390 * 118.11860 * 91.54075 * 16 15 14 19 19 N 1.48144 * 104.61882 * 272.80524 * 18 16 15 20 20 C 1.34775 * 127.84271 * 219.58855 * 19 18 16 21 21 O 1.21619 * 120.00110 * 183.14669 * 20 19 18 22 22 C 1.47259 * 119.99650 * 3.14062 * 20 19 18 23 23 N 1.30561 * 125.54078 * 172.78392 * 22 20 19 24 24 C 1.30707 * 115.90663 * 180.02562 * 23 22 20 25 25 C 1.34226 * 115.78202 * 359.97438 * 24 23 22 26 26 S 1.71068 * 109.09565 * 0.02562 * 25 24 23 27 27 C 1.48148 * 104.32152 * 39.84989 * 19 18 16 28 28 C 1.47073 * 87.88135 * 27.34134 * 11 10 9 29 29 H 0.96997 * 119.99865 * 0.02562 * 1 2 3 30 30 H 1.09001 * 113.28219 * 313.06468 * 9 7 2 31 31 H 1.09001 * 113.46750 * 105.36303 * 10 9 7 32 32 H 1.09006 * 113.51905 * 334.93793 * 10 9 7 33 33 H 1.09003 * 117.44102 * 3.82253 * 15 14 12 34 34 H 1.08999 * 117.44225 * 219.12216 * 15 14 12 35 35 H 1.09010 * 110.40393 * 154.02817 * 18 16 15 36 36 H 1.08997 * 110.51077 * 31.64730 * 18 16 15 37 37 H 1.07996 * 122.10405 * 179.97438 * 24 23 22 38 38 H 1.08001 * 125.45464 * 179.97438 * 25 24 23 39 39 H 1.09004 * 110.40777 * 78.93652 * 27 19 18 40 40 H 1.09001 * 110.40514 * 201.36527 * 27 19 18 41 41 H 1.09005 * 113.46201 * 87.43805 * 28 11 10 42 42 H 1.08993 * 113.46447 * 217.87621 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.1486 -3.7443 0.0005 11 7 1.2071 -4.3594 -0.9471 12 6 0.8317 -5.6140 -1.2658 13 8 1.3279 -6.5598 -0.6912 14 6 -0.2046 -5.8414 -2.3360 15 6 0.2000 -6.4329 -3.6878 16 6 -0.6651 -7.2592 -2.7340 17 1 -0.2587 -8.1507 -2.2565 18 6 -2.1996 -7.1563 -2.8695 19 7 -2.5731 -5.9996 -2.0227 20 6 -3.6448 -5.8783 -1.2145 21 8 -3.8449 -4.8350 -0.6223 22 6 -4.5735 -7.0090 -1.0486 23 7 -5.5636 -7.0595 -0.1991 24 6 -6.2707 -8.1587 -0.2109 25 6 -5.8855 -9.0912 -1.0961 26 16 -4.5291 -8.5130 -1.9635 27 6 -1.5046 -5.0038 -2.2707 28 6 0.8603 -3.0033 -1.3985 29 1 -0.4850 0.8400 -0.0004 30 1 0.4432 -2.5303 0.7317 31 1 2.1876 -4.2513 0.9647 32 1 3.1375 -3.5676 -0.4229 33 1 1.2397 -6.7355 -3.8128 34 1 -0.2807 -6.0269 -4.5778 35 1 -2.6754 -8.0657 -2.5019 36 1 -2.4801 -6.9742 -3.9069 37 1 -7.1119 -8.3072 0.4500 38 1 -6.3559 -10.0530 -1.2376 39 1 -1.6763 -4.4897 -3.2164 40 1 -1.4554 -4.2870 -1.4510 41 1 1.5093 -2.6305 -2.1910 42 1 -0.1983 -2.8792 -1.6263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270064397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:06 Heat of formation + Delta-G solvation = 74.774482 kcal Electronic energy + Delta-G solvation = -27882.721393 eV Core-core repulsion = 23958.203759 eV Total energy + Delta-G solvation = -3924.517633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03730 -40.07164 -39.12155 -38.15903 -36.81697 -33.90596 -32.68871 -30.99441 -29.85856 -28.54730 -27.58646 -25.64743 -25.27673 -24.93141 -22.87097 -21.65542 -21.38982 -19.89841 -19.53791 -18.82781 -17.94514 -17.07417 -16.72462 -16.43286 -16.24267 -15.99531 -15.43506 -15.16005 -14.90749 -14.63402 -14.39144 -14.34025 -13.81344 -13.76524 -13.33751 -13.14075 -12.85111 -12.57513 -12.35811 -12.06165 -11.85314 -11.51961 -11.45325 -11.30830 -10.96448 -10.86142 -10.74842 -10.59828 -10.36944 -10.19972 -10.01368 -9.85187 -9.66740 -9.26549 -9.23192 -9.11966 -8.93223 -8.56875 -7.92738 -6.15360 -4.22304 -0.05459 0.82889 1.27865 2.11810 2.33106 2.77511 3.00461 3.24649 3.26672 3.32987 3.34226 3.52091 3.91068 4.15531 4.29847 4.34764 4.51173 4.61338 4.75421 4.76882 4.85431 5.02422 5.06864 5.09115 5.13686 5.43610 5.52014 5.64306 5.67578 5.75869 5.80396 5.88759 6.04019 6.14473 6.22366 6.42260 6.54094 6.62481 6.79287 7.05433 7.31509 7.56574 7.81269 7.83858 8.18254 8.42710 8.66710 8.81473 9.44583 10.93911 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.002905 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.218880 B = 9636.379474 C =10829.402436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.101 3.899 11 N -0.635 5.635 12 C 0.577 3.423 13 O -0.562 6.562 14 C -0.174 4.174 15 C -0.100 4.100 16 C -0.146 4.146 17 H 0.135 0.865 18 C 0.124 3.876 19 N -0.618 5.618 20 C 0.613 3.387 21 O -0.483 6.483 22 C 0.004 3.996 23 N -0.397 5.397 24 C 0.028 3.972 25 C -0.282 4.282 26 S 0.189 5.811 27 C 0.146 3.854 28 C 0.095 3.905 29 H 0.266 0.734 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.179 0.821 38 H 0.182 0.818 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.691 -18.502 -11.038 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.021 4.021 11 N -0.367 5.367 12 C 0.365 3.635 13 O -0.442 6.442 14 C -0.178 4.178 15 C -0.138 4.138 16 C -0.166 4.166 17 H 0.153 0.847 18 C 0.000 4.000 19 N -0.354 5.354 20 C 0.397 3.603 21 O -0.354 6.354 22 C -0.272 4.272 23 N -0.113 5.113 24 C -0.128 4.128 25 C -0.422 4.422 26 S 0.444 5.556 27 C 0.025 3.975 28 C -0.027 4.027 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.196 0.804 38 H 0.200 0.800 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.394 -18.392 -10.779 22.911 hybrid contribution -0.499 0.455 0.610 0.910 sum -8.893 -17.937 -10.169 22.455 Atomic orbital electron populations 1.69945 1.06010 1.27345 1.48464 1.25035 0.94852 0.99365 0.94226 0.86604 0.79582 0.82744 0.78779 1.20092 1.21217 1.20072 1.20833 0.92913 0.89480 1.52610 0.91887 1.20385 0.94734 0.91084 0.92105 1.23391 0.94253 0.93121 0.91343 1.49905 1.42136 1.04688 1.39959 1.18420 0.81682 0.81493 0.81912 1.90646 1.58048 1.41253 1.54276 1.22758 0.97939 0.97816 0.99284 1.23094 1.00907 0.98530 0.91270 1.23696 0.92561 0.95433 1.04878 0.84679 1.22203 0.93491 0.88635 0.95696 1.48967 1.24056 1.18387 1.44019 1.16198 0.79268 0.85681 0.79177 1.90950 1.71978 1.27385 1.45123 1.27396 1.01040 0.98395 1.00405 1.66607 1.03193 1.23474 1.18051 1.21849 1.01948 0.88057 1.00937 1.27213 1.04168 1.06730 1.04113 1.84045 1.23377 1.11375 1.36818 1.21970 0.81491 0.90112 1.03953 1.23792 0.99989 0.76550 1.02354 0.92465 0.91258 0.92434 0.90685 0.86921 0.87330 0.90194 0.88817 0.80435 0.80043 0.89076 0.87548 0.90533 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.29 13.26 55.43 0.74 -23.55 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.52 -13.18 8.83 -34.44 -0.30 -13.49 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.04 0.85 3.79 -91.12 -0.35 0.50 16 10 C 0.10 2.09 8.17 -8.51 -0.07 2.02 16 11 N -0.63 -12.70 3.62 -185.06 -0.67 -13.37 16 12 C 0.58 11.00 7.70 -10.99 -0.08 10.91 16 13 O -0.56 -12.29 17.59 5.56 0.10 -12.19 16 14 C -0.17 -2.46 2.70 -154.04 -0.42 -2.87 16 15 C -0.10 -0.98 9.89 -26.73 -0.26 -1.24 16 16 C -0.15 -1.56 6.78 -89.22 -0.60 -2.17 16 17 H 0.14 1.49 8.14 -51.93 -0.42 1.07 16 18 C 0.12 1.15 6.16 -2.41 -0.01 1.14 16 19 N -0.62 -8.44 3.31 -170.38 -0.56 -9.01 16 20 C 0.61 10.03 7.90 -12.60 -0.10 9.93 16 21 O -0.48 -10.12 17.36 5.26 0.09 -10.03 16 22 C 0.00 0.05 7.39 -14.43 -0.11 -0.05 16 23 N -0.40 -5.75 10.60 -11.51 -0.12 -5.87 16 24 C 0.03 0.28 11.24 -19.44 -0.22 0.07 16 25 C -0.28 -2.18 11.09 29.32 0.33 -1.85 16 26 S 0.19 1.60 18.85 -107.50 -2.03 -0.43 16 27 C 0.15 2.11 5.84 -2.19 -0.01 2.10 16 28 C 0.10 1.95 7.51 -8.37 -0.06 1.89 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.07 1.82 8.11 -51.93 -0.42 1.40 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 33 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.66 4.03 -23.83 -0.10 0.56 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.11 1.93 6.03 -51.93 -0.31 1.62 16 41 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 42 H 0.06 1.28 6.11 -51.93 -0.32 0.96 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -34.02 367.47 -9.23 -43.25 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.92 Total: 1.97 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -2.38 Total: 8.60 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.62 Total: -51.80 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.19 Total: -22.22 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.03 Total: -0.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.02 -9.23 -43.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270064397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.026 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds