Wall clock time and date at job start Wed Apr 1 2020 04:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00376 * 2 1 4 4 H 1.48496 * 109.47010 * 270.00311 * 3 2 1 5 5 H 1.48502 * 109.46711 * 29.99938 * 3 2 1 6 6 H 1.48496 * 109.47128 * 149.99741 * 3 2 1 7 7 C 1.37882 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00437 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99835 * 180.27762 * 7 2 1 10 10 C 1.53944 * 113.74148 * 278.46542 * 9 7 2 11 11 N 1.47814 * 86.03441 * 222.08374 * 10 9 7 12 12 C 1.34777 * 134.45711 * 204.64012 * 11 10 9 13 13 O 1.21279 * 120.00748 * 175.49443 * 12 11 10 14 14 C 1.50706 * 119.99703 * 355.49578 * 12 11 10 15 15 C 1.53066 * 119.24660 * 187.76330 * 14 12 11 16 16 C 1.54002 * 121.22826 * 259.27362 * 14 12 11 17 17 H 1.08999 * 121.75921 * 1.00135 * 16 14 12 18 18 C 1.54585 * 105.00750 * 137.37253 * 16 14 12 19 19 C 1.54943 * 102.86168 * 338.04063 * 18 16 14 20 20 N 1.47532 * 117.37027 * 33.83383 * 14 12 11 21 21 C 1.34774 * 127.04701 * 64.93643 * 20 14 12 22 22 O 1.21683 * 119.99982 * 185.17917 * 21 20 14 23 23 C 1.46689 * 119.99708 * 5.17579 * 21 20 14 24 24 C 1.35663 * 126.12782 * 186.59433 * 23 21 20 25 25 N 1.30937 * 114.18915 * 179.79337 * 24 23 21 26 26 C 1.29428 * 117.36535 * 0.51839 * 25 24 23 27 27 S 1.70957 * 110.39048 * 359.71345 * 26 25 24 28 28 C 1.47582 * 91.05335 * 24.54506 * 11 10 9 29 29 H 0.97002 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.09008 * 112.94518 * 50.05158 * 9 7 2 31 31 H 1.08998 * 113.76479 * 336.34437 * 10 9 7 32 32 H 1.08994 * 113.77434 * 107.74439 * 10 9 7 33 33 H 1.08992 * 117.45764 * 218.79185 * 15 14 12 34 34 H 1.08999 * 117.45468 * 3.57352 * 15 14 12 35 35 H 1.09001 * 110.73045 * 219.70023 * 18 16 14 36 36 H 1.09002 * 110.88798 * 96.45826 * 18 16 14 37 37 H 1.08999 * 110.65788 * 278.99093 * 19 18 16 38 38 H 1.08994 * 110.80215 * 155.94115 * 19 18 16 39 39 H 1.08000 * 122.90520 * 359.96562 * 24 23 21 40 40 H 1.08001 * 124.80651 * 179.69257 * 26 25 24 41 41 H 1.08997 * 113.77139 * 221.14958 * 28 11 10 42 42 H 1.09008 * 113.86524 * 89.76558 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0058 10 6 4.1371 -0.9828 -1.3848 11 7 5.0961 -2.0401 -1.0009 12 6 6.3494 -2.3602 -1.3791 13 8 6.9401 -3.2605 -0.8210 14 6 7.0171 -1.5994 -2.4956 15 6 8.3648 -2.0880 -3.0321 16 6 7.0968 -2.1785 -3.9203 17 1 6.6613 -3.1456 -4.1717 18 6 6.7705 -0.9905 -4.8541 19 6 5.9947 -0.0239 -3.9243 20 7 6.6949 -0.1656 -2.6268 21 6 6.9793 0.8144 -1.7464 22 8 6.5700 1.9438 -1.9400 23 6 7.7824 0.5194 -0.5548 24 6 8.0366 1.3719 0.4695 25 7 8.7798 0.8624 1.4196 26 6 9.1829 -0.3583 1.2696 27 16 8.5961 -1.0030 -0.2010 28 6 4.1314 -2.6027 -0.0361 29 1 -0.4850 0.8401 -0.0004 30 1 3.9332 -0.5519 0.7790 31 1 3.4810 -1.2630 -2.2089 32 1 4.5928 -0.0016 -1.5170 33 1 9.1055 -1.3324 -3.2935 34 1 8.7644 -3.0140 -2.6186 35 1 6.1430 -1.3137 -5.6847 36 1 7.6838 -0.5227 -5.2216 37 1 4.9525 -0.3304 -3.8344 38 1 6.0628 1.0012 -4.2881 39 1 7.6565 2.3823 0.5000 40 1 9.8026 -0.8938 1.9737 41 1 4.5826 -2.9123 0.9066 42 1 3.4729 -3.3600 -0.4615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270073266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:03 Heat of formation + Delta-G solvation = 75.183849 kcal Electronic energy + Delta-G solvation = -29875.046529 eV Core-core repulsion = 25950.546648 eV Total energy + Delta-G solvation = -3924.499882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19918 -39.86046 -39.01442 -38.13497 -37.05807 -33.03016 -32.64798 -31.68249 -30.16676 -29.60913 -26.35708 -25.91489 -25.33043 -24.02069 -23.36730 -22.01675 -20.78294 -20.27400 -19.57687 -19.19168 -17.75757 -17.22761 -16.89188 -16.66174 -16.11449 -15.81060 -15.25541 -15.04600 -14.76033 -14.28007 -14.16618 -14.01700 -13.93017 -13.87883 -13.48027 -13.10240 -12.88202 -12.82444 -12.45400 -12.21190 -11.94279 -11.89103 -11.50138 -11.34653 -11.01142 -10.99090 -10.87643 -10.66148 -10.22631 -10.05489 -9.89634 -9.65407 -9.57954 -9.49192 -9.34789 -9.04835 -8.79341 -8.66972 -8.18186 -6.24075 -4.27747 0.22214 1.23803 1.58484 2.26536 2.39764 2.73077 3.01493 3.10761 3.23811 3.31820 3.38747 3.43987 3.98399 4.21548 4.25577 4.29864 4.40181 4.54575 4.80743 4.83858 4.98775 5.00243 5.09435 5.24015 5.30256 5.44816 5.48189 5.55284 5.65804 5.67692 5.80116 5.85281 5.97178 5.98329 6.03916 6.09996 6.19994 6.27182 6.39707 7.11100 7.18193 7.49394 7.55923 7.89563 8.08547 8.29114 8.39475 8.77856 9.36853 10.87419 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.005549 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.510411 B = 5044.935701 C = 5608.249211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.081 3.919 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.081 0.919 9 C -0.010 4.010 10 C 0.088 3.912 11 N -0.625 5.625 12 C 0.560 3.440 13 O -0.540 6.540 14 C 0.027 3.973 15 C -0.117 4.117 16 C -0.122 4.122 17 H 0.133 0.867 18 C -0.106 4.106 19 C 0.105 3.895 20 N -0.585 5.585 21 C 0.622 3.378 22 O -0.518 6.518 23 C -0.304 4.304 24 C 0.116 3.884 25 N -0.480 5.480 26 C 0.000 4.000 27 S 0.237 5.763 28 C 0.120 3.880 29 H 0.267 0.733 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.185 0.815 40 H 0.200 0.800 41 H 0.067 0.933 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.247 -3.495 -8.303 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.122 4.122 3 Si 0.694 3.306 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.099 0.901 9 C -0.030 4.030 10 C -0.034 4.034 11 N -0.358 5.358 12 C 0.346 3.654 13 O -0.419 6.419 14 C -0.064 4.064 15 C -0.157 4.157 16 C -0.142 4.142 17 H 0.150 0.850 18 C -0.144 4.144 19 C -0.016 4.016 20 N -0.319 5.319 21 C 0.411 3.589 22 O -0.395 6.395 23 C -0.429 4.429 24 C -0.044 4.044 25 N -0.194 5.194 26 C -0.293 4.293 27 S 0.495 5.505 28 C -0.001 4.001 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.202 0.798 40 H 0.217 0.783 41 H 0.085 0.915 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.646 -3.916 -8.030 20.676 hybrid contribution -0.094 1.808 0.146 1.816 sum 18.551 -2.109 -7.883 20.267 Atomic orbital electron populations 1.69883 1.06260 1.27354 1.49171 1.24950 0.94633 0.98979 0.93685 0.86987 0.80510 0.83798 0.79311 1.19686 1.21000 1.18832 1.20776 0.87405 0.94883 1.52239 0.90095 1.21038 0.97293 0.92433 0.92187 1.24134 0.87520 0.89327 1.02453 1.50295 1.11596 1.32597 1.41266 1.18773 0.81264 0.82975 0.82401 1.90661 1.64140 1.32178 1.54935 1.22010 1.03486 0.82355 0.98593 1.23844 0.89713 1.03745 0.98369 1.24118 1.01526 1.00272 0.88240 0.84967 1.22457 1.01125 0.93678 0.97156 1.22800 0.96788 1.01333 0.80697 1.48056 1.57936 1.04824 1.21108 1.16292 0.78633 0.83530 0.80437 1.90864 1.53120 1.20487 1.75068 1.25760 1.13506 0.99721 1.03869 1.22197 0.94101 1.01113 0.86968 1.66307 1.13134 1.11185 1.28781 1.29025 1.03042 0.94661 1.02598 1.84973 1.39948 1.10448 1.15169 1.23340 0.86750 0.99148 0.90854 0.92300 0.92200 0.89516 0.92273 0.87528 0.85567 0.88656 0.89993 0.89771 0.88745 0.79837 0.78314 0.91473 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 21.25 26.97 -169.99 -4.59 16.67 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.44 6.29 56.52 0.36 -6.08 16 7 C -0.52 -13.38 9.33 -34.44 -0.32 -13.70 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 9 C -0.01 -0.22 2.90 -90.85 -0.26 -0.48 16 10 C 0.09 1.74 5.72 -2.84 -0.02 1.73 16 11 N -0.63 -11.50 3.61 -178.23 -0.64 -12.15 16 12 C 0.56 9.32 6.12 -10.98 -0.07 9.26 16 13 O -0.54 -9.66 15.89 5.56 0.09 -9.57 16 14 C 0.03 0.35 0.98 -131.85 -0.13 0.22 16 15 C -0.12 -1.16 8.34 -25.60 -0.21 -1.37 16 16 C -0.12 -1.18 7.01 -88.17 -0.62 -1.80 16 17 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 18 C -0.11 -0.88 6.88 -24.87 -0.17 -1.05 16 19 C 0.10 1.25 6.65 -2.13 -0.01 1.24 16 20 N -0.58 -8.47 1.72 -157.79 -0.27 -8.74 16 21 C 0.62 10.63 6.69 -12.85 -0.09 10.54 16 22 O -0.52 -10.20 17.12 5.20 0.09 -10.11 16 23 C -0.30 -4.86 6.33 -37.09 -0.23 -5.10 16 24 C 0.12 1.83 11.10 -18.85 -0.21 1.62 16 25 N -0.48 -7.24 10.51 -15.38 -0.16 -7.40 16 26 C 0.00 0.00 12.22 51.75 0.63 0.63 16 27 S 0.24 3.17 16.31 -107.50 -1.75 1.42 16 28 C 0.12 2.31 8.39 -2.97 -0.02 2.29 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.06 1.41 6.69 -51.92 -0.35 1.07 16 31 H 0.09 1.68 8.08 -51.93 -0.42 1.26 16 32 H 0.06 1.22 5.62 -51.93 -0.29 0.93 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.13 1.20 7.85 -51.93 -0.41 0.79 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.06 7.15 -51.93 -0.37 0.69 16 38 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 39 H 0.18 2.76 8.06 -52.49 -0.42 2.34 16 40 H 0.20 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.08 1.58 8.09 -51.92 -0.42 1.16 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -32.64 355.29 -8.18 -40.82 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.23 Total: 2.63 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.83 Total: 6.15 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.30 Total: -53.36 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.18 Total: -19.67 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.59 Total: 16.67 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.75 Total: 1.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.64 -8.18 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270073266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.004 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds