Wall clock time and date at job start Wed Apr 1 2020 04:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00376 * 2 1 4 4 H 1.48496 * 109.47010 * 270.00311 * 3 2 1 5 5 H 1.48502 * 109.46711 * 29.99938 * 3 2 1 6 6 H 1.48496 * 109.47128 * 149.99741 * 3 2 1 7 7 C 1.37882 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00437 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99835 * 180.27762 * 7 2 1 10 10 C 1.53944 * 113.74148 * 278.46542 * 9 7 2 11 11 N 1.47814 * 86.03441 * 222.08374 * 10 9 7 12 12 C 1.34777 * 134.45711 * 204.64012 * 11 10 9 13 13 O 1.21279 * 120.00748 * 175.49443 * 12 11 10 14 14 C 1.50706 * 119.99703 * 355.49578 * 12 11 10 15 15 C 1.53066 * 119.24660 * 187.76330 * 14 12 11 16 16 C 1.54002 * 121.22826 * 259.27362 * 14 12 11 17 17 H 1.08999 * 121.75921 * 1.00135 * 16 14 12 18 18 C 1.54585 * 105.00750 * 137.37253 * 16 14 12 19 19 C 1.54943 * 102.86168 * 338.04063 * 18 16 14 20 20 N 1.47532 * 117.37027 * 33.83383 * 14 12 11 21 21 C 1.34774 * 127.04701 * 64.93643 * 20 14 12 22 22 O 1.21683 * 119.99982 * 185.17917 * 21 20 14 23 23 C 1.46689 * 119.99708 * 5.17579 * 21 20 14 24 24 C 1.35663 * 126.12782 * 186.59433 * 23 21 20 25 25 N 1.30937 * 114.18915 * 179.79337 * 24 23 21 26 26 C 1.29428 * 117.36535 * 0.51839 * 25 24 23 27 27 S 1.70957 * 110.39048 * 359.71345 * 26 25 24 28 28 C 1.47582 * 91.05335 * 24.54506 * 11 10 9 29 29 H 0.97002 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.09008 * 112.94518 * 50.05158 * 9 7 2 31 31 H 1.08998 * 113.76479 * 336.34437 * 10 9 7 32 32 H 1.08994 * 113.77434 * 107.74439 * 10 9 7 33 33 H 1.08992 * 117.45764 * 218.79185 * 15 14 12 34 34 H 1.08999 * 117.45468 * 3.57352 * 15 14 12 35 35 H 1.09001 * 110.73045 * 219.70023 * 18 16 14 36 36 H 1.09002 * 110.88798 * 96.45826 * 18 16 14 37 37 H 1.08999 * 110.65788 * 278.99093 * 19 18 16 38 38 H 1.08994 * 110.80215 * 155.94115 * 19 18 16 39 39 H 1.08000 * 122.90520 * 359.96562 * 24 23 21 40 40 H 1.08001 * 124.80651 * 179.69257 * 26 25 24 41 41 H 1.08997 * 113.77139 * 221.14958 * 28 11 10 42 42 H 1.09008 * 113.86524 * 89.76558 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0058 10 6 4.1371 -0.9828 -1.3848 11 7 5.0961 -2.0401 -1.0009 12 6 6.3494 -2.3602 -1.3791 13 8 6.9401 -3.2605 -0.8210 14 6 7.0171 -1.5994 -2.4956 15 6 8.3648 -2.0880 -3.0321 16 6 7.0968 -2.1785 -3.9203 17 1 6.6613 -3.1456 -4.1717 18 6 6.7705 -0.9905 -4.8541 19 6 5.9947 -0.0239 -3.9243 20 7 6.6949 -0.1656 -2.6268 21 6 6.9793 0.8144 -1.7464 22 8 6.5700 1.9438 -1.9400 23 6 7.7824 0.5194 -0.5548 24 6 8.0366 1.3719 0.4695 25 7 8.7798 0.8624 1.4196 26 6 9.1829 -0.3583 1.2696 27 16 8.5961 -1.0030 -0.2010 28 6 4.1314 -2.6027 -0.0361 29 1 -0.4850 0.8401 -0.0004 30 1 3.9332 -0.5519 0.7790 31 1 3.4810 -1.2630 -2.2089 32 1 4.5928 -0.0016 -1.5170 33 1 9.1055 -1.3324 -3.2935 34 1 8.7644 -3.0140 -2.6186 35 1 6.1430 -1.3137 -5.6847 36 1 7.6838 -0.5227 -5.2216 37 1 4.9525 -0.3304 -3.8344 38 1 6.0628 1.0012 -4.2881 39 1 7.6565 2.3823 0.5000 40 1 9.8026 -0.8938 1.9737 41 1 4.5826 -2.9123 0.9066 42 1 3.4729 -3.3600 -0.4615 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270073266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:02 Heat of formation + Delta-G solvation = 53.526282 kcal Electronic energy + Delta-G solvation = -29875.985672 eV Core-core repulsion = 25950.546648 eV Total energy + Delta-G solvation = -3925.439024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.30242 -41.04083 -40.37213 -39.38633 -38.42188 -34.75350 -34.02304 -32.69097 -31.53164 -30.90664 -27.76176 -27.23116 -27.02250 -25.05791 -24.45454 -23.16830 -21.76821 -21.58132 -20.85842 -20.44258 -19.33010 -18.97790 -18.08564 -17.77049 -17.34823 -17.03105 -16.76016 -16.36116 -15.98044 -15.78163 -15.35973 -15.27035 -15.08726 -15.03778 -14.77315 -14.64575 -14.13344 -13.87626 -13.75377 -13.60323 -13.54526 -13.05465 -12.89570 -12.72372 -12.54283 -12.15528 -12.06690 -11.95336 -11.78567 -11.61714 -11.40530 -11.32668 -10.86948 -10.76273 -10.71658 -10.63466 -10.15212 -9.87604 -9.67263 -8.38169 -6.42514 -0.88384 0.15722 0.51338 1.13299 1.23555 1.24734 1.31427 1.37623 1.62659 1.73185 1.92904 2.23596 2.41472 2.93851 2.97882 3.15107 3.28046 3.43000 3.58852 3.83761 3.93762 4.05068 4.09742 4.17733 4.20911 4.22225 4.35637 4.45486 4.46986 4.59459 4.64874 4.67019 4.73048 4.74253 4.84575 4.90166 4.94690 5.04249 5.22343 5.28613 5.51647 6.05013 6.18954 6.46510 6.61304 6.69416 6.70071 7.00457 7.24312 8.77121 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.005549 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.510411 B = 5044.935701 C = 5608.249211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.039 3.961 3 Si 0.917 3.083 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.506 4.506 8 H 0.056 0.944 9 C -0.021 4.021 10 C 0.109 3.891 11 N -0.630 5.630 12 C 0.562 3.438 13 O -0.550 6.550 14 C -0.010 4.010 15 C -0.098 4.098 16 C -0.096 4.096 17 H 0.148 0.852 18 C -0.092 4.092 19 C 0.093 3.907 20 N -0.580 5.580 21 C 0.614 3.386 22 O -0.560 6.560 23 C -0.331 4.331 24 C 0.105 3.895 25 N -0.502 5.502 26 C 0.010 3.990 27 S 0.265 5.735 28 C 0.127 3.873 29 H 0.269 0.731 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.179 0.821 40 H 0.239 0.761 41 H 0.074 0.926 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.949 -4.965 -9.820 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.161 4.161 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.545 4.545 8 H 0.074 0.926 9 C -0.041 4.041 10 C -0.014 4.014 11 N -0.363 5.363 12 C 0.350 3.650 13 O -0.430 6.430 14 C -0.100 4.100 15 C -0.137 4.137 16 C -0.115 4.115 17 H 0.166 0.834 18 C -0.129 4.129 19 C -0.028 4.028 20 N -0.313 5.313 21 C 0.404 3.596 22 O -0.441 6.441 23 C -0.455 4.455 24 C -0.055 4.055 25 N -0.216 5.216 26 C -0.283 4.283 27 S 0.523 5.477 28 C 0.006 3.994 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.141 0.859 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.196 0.804 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.384 -5.433 -9.574 24.051 hybrid contribution -0.885 2.122 0.664 2.393 sum 20.499 -3.312 -8.910 22.596 Atomic orbital electron populations 1.69976 1.07573 1.28071 1.51549 1.25506 0.95033 1.01540 0.94008 0.86199 0.79222 0.80974 0.79355 1.19235 1.20902 1.19077 1.20966 0.89434 0.93626 1.50429 0.92579 1.20956 0.94939 0.94712 0.93481 1.23699 0.87642 0.89500 1.00609 1.50173 1.12286 1.32285 1.41551 1.19276 0.80148 0.82893 0.82682 1.90652 1.63979 1.32889 1.55465 1.22051 1.06526 0.81554 0.99904 1.24017 0.88904 1.04048 0.96691 1.24421 1.00373 1.01035 0.85687 0.83440 1.22483 1.01839 0.92009 0.96587 1.23030 0.96788 1.02377 0.80581 1.48113 1.57142 1.04888 1.21191 1.16536 0.78590 0.83528 0.80959 1.90822 1.54988 1.22126 1.76148 1.25812 1.14504 1.01340 1.03869 1.22269 0.94452 1.01290 0.87475 1.66346 1.13970 1.12431 1.28886 1.29720 1.01880 0.93885 1.02794 1.84739 1.39074 1.08705 1.15185 1.23162 0.87116 0.97362 0.91775 0.92191 0.93692 0.89126 0.93099 0.85901 0.84731 0.85899 0.88226 0.90820 0.89103 0.80417 0.74460 0.90772 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.96 21.45 0.30 -55.08 16 2 C 0.04 2.17 5.47 84.66 0.46 2.63 16 3 Si 0.92 44.81 26.97 68.60 1.85 46.66 16 4 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.99 6.29 99.48 0.63 -12.36 16 7 C -0.51 -26.78 9.33 25.60 0.24 -26.54 16 8 H 0.06 3.20 8.06 -2.91 -0.02 3.17 16 9 C -0.02 -0.95 2.90 -10.88 -0.03 -0.98 16 10 C 0.11 4.25 5.72 86.44 0.49 4.74 16 11 N -0.63 -22.38 3.61 -836.19 -3.02 -25.41 16 12 C 0.56 17.47 6.12 87.66 0.54 18.00 16 13 O -0.55 -18.21 15.89 -3.03 -0.05 -18.26 16 14 C -0.01 -0.23 0.98 3.02 0.00 -0.23 16 15 C -0.10 -1.53 8.34 31.33 0.26 -1.27 16 16 C -0.10 -1.45 7.01 -9.20 -0.06 -1.51 16 17 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 18 C -0.09 -1.15 6.88 31.80 0.22 -0.93 16 19 C 0.09 2.05 6.65 86.73 0.58 2.62 16 20 N -0.58 -15.96 1.72 -771.35 -1.33 -17.29 16 21 C 0.61 20.87 6.69 86.45 0.58 21.44 16 22 O -0.56 -22.56 17.12 -4.30 -0.07 -22.63 16 23 C -0.33 -10.41 6.33 23.88 0.15 -10.26 16 24 C 0.11 3.35 11.10 84.23 0.93 4.28 16 25 N -0.50 -14.65 10.51 -202.56 -2.13 -16.78 16 26 C 0.01 0.22 12.22 130.60 1.60 1.81 16 27 S 0.26 6.50 16.31 -56.49 -0.92 5.58 16 28 C 0.13 4.81 8.39 86.48 0.73 5.54 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.05 2.15 6.69 -2.38 -0.02 2.13 16 31 H 0.09 3.46 8.08 -2.39 -0.02 3.44 16 32 H 0.05 2.09 5.62 -2.39 -0.01 2.08 16 33 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.13 1.95 7.85 -2.39 -0.02 1.93 16 35 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.77 7.15 -2.39 -0.02 1.75 16 38 H 0.09 2.06 7.90 -2.39 -0.02 2.04 16 39 H 0.18 5.62 8.06 -2.91 -0.02 5.60 16 40 H 0.24 3.26 8.06 -2.91 -0.02 3.24 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.09 3.32 8.09 -2.38 -0.02 3.30 16 Total: -1.00 -72.64 355.29 2.29 -70.35 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.98 Total: 13.50 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 6.68 Total: 19.36 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -6.18 Total: -114.56 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.12 Total: -40.89 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.85 Total: 46.66 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -0.92 Total: 5.58 kcal Total: -72.64 2.29 -70.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270073266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.874 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds