Wall clock time and date at job start Wed Apr 1 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53948 * 113.74266 * 276.67425 * 9 7 2 11 11 N 1.47578 * 86.11700 * 222.04884 * 10 9 7 12 12 C 1.34781 * 134.49101 * 204.63711 * 11 10 9 13 13 O 1.21280 * 119.99607 * 180.02562 * 12 11 10 14 14 C 1.50699 * 120.00312 * 0.02562 * 12 11 10 15 15 H 1.09001 * 115.55443 * 34.36423 * 14 12 11 16 16 C 1.53148 * 117.51766 * 248.61026 * 14 12 11 17 17 C 1.52317 * 117.51731 * 180.18337 * 14 12 11 18 18 C 1.53290 * 128.82162 * 349.54928 * 17 14 12 19 19 N 1.47721 * 85.85710 * 196.98223 * 18 17 14 20 20 C 1.34779 * 134.39444 * 204.08877 * 19 18 17 21 21 O 1.21580 * 120.00139 * 179.97438 * 20 19 18 22 22 C 1.47688 * 120.00215 * 0.02562 * 20 19 18 23 23 C 1.39481 * 122.10471 * 179.97438 * 22 20 19 24 24 C 1.35002 * 111.68248 * 180.02562 * 23 22 20 25 25 S 1.71760 * 105.45336 * 359.97438 * 24 23 22 26 26 N 1.30606 * 122.09718 * 359.70982 * 22 20 19 27 27 C 1.47725 * 91.21167 * 24.09205 * 19 18 17 28 28 C 1.47580 * 91.01765 * 24.64172 * 11 10 9 29 29 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 30 30 H 1.08997 * 112.94762 * 48.40610 * 9 7 2 31 31 H 1.08997 * 113.76595 * 336.35229 * 10 9 7 32 32 H 1.09004 * 113.77048 * 107.74842 * 10 9 7 33 33 H 1.08995 * 117.51963 * 359.97438 * 16 14 12 34 34 H 1.09006 * 117.51684 * 145.12322 * 16 14 12 35 35 H 1.09007 * 113.81058 * 311.21322 * 18 17 14 36 36 H 1.08994 * 113.81294 * 82.74702 * 18 17 14 37 37 H 1.07997 * 124.15841 * 0.03728 * 23 22 20 38 38 H 1.08001 * 127.27341 * 180.02562 * 24 23 22 39 39 H 1.09005 * 113.80840 * 221.66751 * 27 19 18 40 40 H 1.09002 * 113.80873 * 90.14363 * 27 19 18 41 41 H 1.08998 * 113.77108 * 221.06070 * 28 11 10 42 42 H 1.08991 * 113.87349 * 89.66683 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7988 -2.9537 1.4001 11 7 1.2204 -4.3063 0.9871 12 6 0.8819 -5.5563 1.3604 13 8 1.4097 -6.5112 0.8308 14 6 -0.1525 -5.7676 2.4358 15 1 -0.9608 -5.0368 2.4608 16 6 0.3244 -6.3413 3.7733 17 6 -0.4888 -7.2036 2.8165 18 6 -0.0829 -8.5041 2.1140 19 7 -1.1665 -9.1374 2.8931 20 6 -1.4176 -10.3942 3.3101 21 8 -2.4194 -10.6313 3.9568 22 6 -0.4753 -11.4832 2.9823 23 6 -0.6916 -12.7989 3.3917 24 6 0.2982 -13.6188 2.9789 25 16 1.3923 -12.6161 2.1141 26 7 0.6103 -11.2756 2.2865 27 6 -1.8649 -7.8432 3.0328 28 6 2.1616 -3.7405 0.0012 29 1 -0.4850 -0.8401 -0.0004 30 1 0.4618 -2.5341 -0.7504 31 1 1.3949 -2.5362 2.2115 32 1 -0.2743 -2.8598 1.5671 33 1 1.3861 -6.5662 3.8750 34 1 -0.1709 -5.9884 4.6780 35 1 -0.2604 -8.4973 1.0385 36 1 0.9139 -8.8556 2.3803 37 1 -1.5460 -13.1220 3.9679 38 1 0.3837 -14.6810 3.1545 39 1 -2.2788 -7.6715 4.0265 40 1 -2.5761 -7.6384 2.2326 41 1 2.1766 -4.2747 -0.9488 42 1 3.1586 -3.5537 0.3999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276530717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:26 Heat of formation + Delta-G solvation = 80.327613 kcal Electronic energy + Delta-G solvation = -26910.821143 eV Core-core repulsion = 22986.544312 eV Total energy + Delta-G solvation = -3924.276831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03922 -40.02895 -39.10001 -37.93409 -36.95332 -34.56479 -32.90928 -31.97880 -29.36986 -28.60692 -26.51929 -25.92981 -25.48214 -25.01051 -23.23077 -21.80807 -20.64113 -19.86575 -18.95737 -18.69581 -18.12283 -17.52338 -17.21467 -16.62507 -16.19562 -16.11444 -15.22132 -14.94916 -14.91742 -14.72292 -14.31152 -13.84745 -13.68577 -13.63168 -13.44489 -13.22021 -13.10979 -12.53105 -12.24660 -11.94547 -11.72348 -11.61672 -11.56046 -11.51923 -11.02892 -10.98728 -10.76857 -10.68319 -10.46483 -10.24863 -10.20478 -9.91543 -9.70824 -9.46964 -9.23595 -8.84346 -8.66597 -8.57415 -8.01637 -6.55004 -4.28612 0.24853 1.09449 1.44154 1.46116 2.48843 2.80980 2.99562 3.28408 3.36123 3.37548 3.55850 3.71296 4.01790 4.22315 4.38989 4.42327 4.48386 4.69749 4.92976 5.01839 5.11010 5.15123 5.15313 5.24682 5.32701 5.42123 5.46021 5.51202 5.61517 5.78257 5.80158 5.85741 5.88832 5.99788 6.05864 6.10992 6.20728 6.36931 6.40323 6.58093 7.24121 7.42119 7.84934 7.94243 8.23480 8.32674 8.58486 8.67992 9.44209 10.84335 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.001985 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.210140 B =14102.619505 C =14885.537644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 1.069 2.931 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.596 4.596 8 H 0.056 0.944 9 C 0.013 3.987 10 C 0.097 3.903 11 N -0.634 5.634 12 C 0.553 3.447 13 O -0.559 6.559 14 C -0.152 4.152 15 H 0.127 0.873 16 C -0.111 4.111 17 C -0.156 4.156 18 C 0.174 3.826 19 N -0.627 5.627 20 C 0.614 3.386 21 O -0.536 6.536 22 C 0.052 3.948 23 C -0.134 4.134 24 C -0.286 4.286 25 S 0.469 5.531 26 N -0.508 5.508 27 C 0.152 3.848 28 C 0.113 3.887 29 H 0.270 0.730 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.172 0.828 38 H 0.187 0.813 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -22.649 7.360 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.181 4.181 3 Si 0.896 3.104 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.634 4.634 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.026 4.026 11 N -0.367 5.367 12 C 0.342 3.658 13 O -0.440 6.440 14 C -0.174 4.174 15 H 0.145 0.855 16 C -0.149 4.149 17 C -0.158 4.158 18 C 0.052 3.948 19 N -0.361 5.361 20 C 0.399 3.601 21 O -0.413 6.413 22 C -0.123 4.123 23 C -0.167 4.167 24 C -0.435 4.435 25 S 0.624 5.376 26 N -0.343 5.343 27 C 0.031 3.969 28 C -0.009 4.009 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.189 0.811 38 H 0.204 0.796 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.243 -21.318 6.399 22.292 hybrid contribution -1.459 -2.063 1.086 2.750 sum -0.216 -23.381 7.485 24.551 Atomic orbital electron populations 1.70825 1.06879 1.30751 1.45232 1.25888 0.96453 1.02787 0.92979 0.83531 0.74947 0.75159 0.76716 1.21286 1.21281 1.20723 1.21807 0.94292 0.90658 1.56681 0.92543 1.20648 0.94918 0.93118 0.91945 1.23873 0.99085 0.77417 1.02204 1.50334 1.41933 1.04530 1.39910 1.19183 0.82425 0.81907 0.82267 1.90634 1.56409 1.40290 1.56647 1.22121 1.01511 0.96578 0.97213 0.85527 1.22801 1.00522 0.99249 0.92308 1.22570 0.97652 0.91362 1.04214 1.22565 0.91696 0.84630 0.95903 1.49708 1.27004 1.05893 1.53479 1.16761 0.83962 0.79896 0.79480 1.90804 1.27689 1.81941 1.40881 1.21087 0.94428 0.95237 1.01509 1.21387 1.01888 0.90526 1.02892 1.27224 1.01853 1.07024 1.07410 1.80677 1.24198 0.90305 1.42440 1.72458 1.12002 1.28363 1.21470 1.22679 0.93406 0.78029 1.02829 1.23351 0.94271 0.92738 0.90511 0.91950 0.92769 0.90203 0.92156 0.87793 0.87203 0.88623 0.88858 0.81111 0.79580 0.89327 0.88655 0.91980 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.84 13.65 55.43 0.76 -24.09 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.07 23.10 29.90 -169.99 -5.08 18.02 16 4 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.29 -5.92 7.11 56.52 0.40 -5.51 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.60 -15.01 8.77 -34.44 -0.30 -15.31 16 8 H 0.06 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.01 0.29 3.09 -90.84 -0.28 0.01 16 10 C 0.10 1.91 8.12 -2.97 -0.02 1.89 16 11 N -0.63 -12.20 3.61 -178.42 -0.64 -12.84 16 12 C 0.55 10.02 7.84 -10.98 -0.09 9.94 16 13 O -0.56 -11.39 15.86 5.56 0.09 -11.30 16 14 C -0.15 -2.12 5.94 -92.04 -0.55 -2.67 16 15 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 16 C -0.11 -1.32 10.24 -27.00 -0.28 -1.59 16 17 C -0.16 -1.97 3.03 -155.02 -0.47 -2.44 16 18 C 0.17 2.38 6.12 -3.23 -0.02 2.36 16 19 N -0.63 -8.41 3.61 -182.92 -0.66 -9.07 16 20 C 0.61 8.77 8.04 -12.40 -0.10 8.67 16 21 O -0.54 -8.75 17.38 5.29 0.09 -8.66 16 22 C 0.05 0.63 6.66 -84.07 -0.56 0.07 16 23 C -0.13 -1.27 9.98 -40.27 -0.40 -1.68 16 24 C -0.29 -1.93 11.41 29.58 0.34 -1.59 16 25 S 0.47 3.61 23.20 -107.50 -2.49 1.11 16 26 N -0.51 -5.96 9.20 24.85 0.23 -5.73 16 27 C 0.15 1.75 8.85 -3.23 -0.03 1.72 16 28 C 0.11 2.29 8.39 -2.97 -0.02 2.26 16 29 H 0.27 7.30 7.04 -40.82 -0.29 7.02 16 30 H 0.05 1.31 7.61 -51.93 -0.40 0.91 16 31 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.41 8.01 -51.93 -0.42 0.99 16 36 H 0.09 1.36 7.34 -51.93 -0.38 0.98 16 37 H 0.17 1.47 7.99 -52.49 -0.42 1.05 16 38 H 0.19 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -31.65 376.72 -10.25 -41.90 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.33 Total: 2.79 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.88 Total: 2.19 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.32 Total: -51.73 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.18 Total: -19.96 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.08 Total: 18.02 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.49 Total: 1.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.65 -10.25 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276530717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.226 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds