Wall clock time and date at job start Wed Apr 1 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53948 * 113.74266 * 276.67425 * 9 7 2 11 11 N 1.47578 * 86.11700 * 222.04884 * 10 9 7 12 12 C 1.34781 * 134.49101 * 204.63711 * 11 10 9 13 13 O 1.21280 * 119.99607 * 180.02562 * 12 11 10 14 14 C 1.50699 * 120.00312 * 0.02562 * 12 11 10 15 15 H 1.09001 * 115.55443 * 34.36423 * 14 12 11 16 16 C 1.53148 * 117.51766 * 248.61026 * 14 12 11 17 17 C 1.52317 * 117.51731 * 180.18337 * 14 12 11 18 18 C 1.53290 * 128.82162 * 349.54928 * 17 14 12 19 19 N 1.47721 * 85.85710 * 196.98223 * 18 17 14 20 20 C 1.34779 * 134.39444 * 204.08877 * 19 18 17 21 21 O 1.21580 * 120.00139 * 179.97438 * 20 19 18 22 22 C 1.47688 * 120.00215 * 0.02562 * 20 19 18 23 23 C 1.39481 * 122.10471 * 179.97438 * 22 20 19 24 24 C 1.35002 * 111.68248 * 180.02562 * 23 22 20 25 25 S 1.71760 * 105.45336 * 359.97438 * 24 23 22 26 26 N 1.30606 * 122.09718 * 359.70982 * 22 20 19 27 27 C 1.47725 * 91.21167 * 24.09205 * 19 18 17 28 28 C 1.47580 * 91.01765 * 24.64172 * 11 10 9 29 29 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 30 30 H 1.08997 * 112.94762 * 48.40610 * 9 7 2 31 31 H 1.08997 * 113.76595 * 336.35229 * 10 9 7 32 32 H 1.09004 * 113.77048 * 107.74842 * 10 9 7 33 33 H 1.08995 * 117.51963 * 359.97438 * 16 14 12 34 34 H 1.09006 * 117.51684 * 145.12322 * 16 14 12 35 35 H 1.09007 * 113.81058 * 311.21322 * 18 17 14 36 36 H 1.08994 * 113.81294 * 82.74702 * 18 17 14 37 37 H 1.07997 * 124.15841 * 0.03728 * 23 22 20 38 38 H 1.08001 * 127.27341 * 180.02562 * 24 23 22 39 39 H 1.09005 * 113.80840 * 221.66751 * 27 19 18 40 40 H 1.09002 * 113.80873 * 90.14363 * 27 19 18 41 41 H 1.08998 * 113.77108 * 221.06070 * 28 11 10 42 42 H 1.08991 * 113.87349 * 89.66683 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7988 -2.9537 1.4001 11 7 1.2204 -4.3063 0.9871 12 6 0.8819 -5.5563 1.3604 13 8 1.4097 -6.5112 0.8308 14 6 -0.1525 -5.7676 2.4358 15 1 -0.9608 -5.0368 2.4608 16 6 0.3244 -6.3413 3.7733 17 6 -0.4888 -7.2036 2.8165 18 6 -0.0829 -8.5041 2.1140 19 7 -1.1665 -9.1374 2.8931 20 6 -1.4176 -10.3942 3.3101 21 8 -2.4194 -10.6313 3.9568 22 6 -0.4753 -11.4832 2.9823 23 6 -0.6916 -12.7989 3.3917 24 6 0.2982 -13.6188 2.9789 25 16 1.3923 -12.6161 2.1141 26 7 0.6103 -11.2756 2.2865 27 6 -1.8649 -7.8432 3.0328 28 6 2.1616 -3.7405 0.0012 29 1 -0.4850 -0.8401 -0.0004 30 1 0.4618 -2.5341 -0.7504 31 1 1.3949 -2.5362 2.2115 32 1 -0.2743 -2.8598 1.5671 33 1 1.3861 -6.5662 3.8750 34 1 -0.1709 -5.9884 4.6780 35 1 -0.2604 -8.4973 1.0385 36 1 0.9139 -8.8556 2.3803 37 1 -1.5460 -13.1220 3.9679 38 1 0.3837 -14.6810 3.1545 39 1 -2.2788 -7.6715 4.0265 40 1 -2.5761 -7.6384 2.2326 41 1 2.1766 -4.2747 -0.9488 42 1 3.1586 -3.5537 0.3999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276530717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:25 Heat of formation + Delta-G solvation = 60.992733 kcal Electronic energy + Delta-G solvation = -26911.659566 eV Core-core repulsion = 22986.544312 eV Total energy + Delta-G solvation = -3925.115255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.06908 -41.20257 -40.31751 -39.08219 -38.37587 -35.68097 -34.83177 -32.67733 -30.92405 -29.70296 -27.53749 -27.16327 -26.88285 -26.60708 -24.60755 -22.62502 -22.15403 -20.88743 -20.08666 -19.52673 -19.31247 -19.01073 -18.46478 -18.06075 -17.31273 -17.16909 -16.60805 -16.45211 -15.93499 -15.74237 -15.57248 -15.33020 -14.84483 -14.69448 -14.51073 -14.29584 -14.12484 -13.96748 -13.61179 -13.46178 -13.27756 -13.12399 -12.78740 -12.44905 -12.37943 -12.31420 -12.00719 -11.90025 -11.73382 -11.50053 -11.41243 -11.05491 -10.93944 -10.90176 -10.54168 -10.43274 -10.07112 -9.74916 -9.62335 -8.59164 -6.32638 -0.48490 0.48201 0.65733 0.75321 1.37886 1.58510 1.62575 1.67652 1.86003 1.87095 2.03754 2.61732 2.65206 2.93576 3.19202 3.29015 3.35851 3.58142 3.76644 3.77588 4.07629 4.11989 4.28654 4.31436 4.36647 4.38197 4.44866 4.48018 4.51184 4.53815 4.57003 4.67630 4.70968 4.73299 4.77783 4.79831 4.81899 4.84328 5.02454 5.29644 5.41731 6.02752 6.21326 6.37809 6.60684 6.81832 6.82409 7.11441 7.46609 8.81415 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.001985 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.210140 B =14102.619505 C =14885.537644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.021 4.021 3 Si 1.112 2.888 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.055 0.945 9 C -0.001 4.001 10 C 0.115 3.885 11 N -0.636 5.636 12 C 0.549 3.451 13 O -0.585 6.585 14 C -0.161 4.161 15 H 0.143 0.857 16 C -0.093 4.093 17 C -0.152 4.152 18 C 0.178 3.822 19 N -0.630 5.630 20 C 0.607 3.393 21 O -0.566 6.566 22 C 0.026 3.974 23 C -0.153 4.153 24 C -0.260 4.260 25 S 0.520 5.480 26 N -0.551 5.551 27 C 0.154 3.846 28 C 0.116 3.884 29 H 0.261 0.739 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.175 0.825 38 H 0.226 0.774 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.861 -23.808 8.629 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.221 4.221 3 Si 0.934 3.066 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.214 1.214 7 C -0.641 4.641 8 H 0.073 0.927 9 C -0.020 4.020 10 C -0.008 4.008 11 N -0.369 5.369 12 C 0.340 3.660 13 O -0.467 6.467 14 C -0.182 4.182 15 H 0.161 0.839 16 C -0.130 4.130 17 C -0.154 4.154 18 C 0.056 3.944 19 N -0.363 5.363 20 C 0.393 3.607 21 O -0.446 6.446 22 C -0.147 4.147 23 C -0.185 4.185 24 C -0.409 4.409 25 S 0.675 5.325 26 N -0.387 5.387 27 C 0.033 3.967 28 C -0.006 4.006 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.160 0.840 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.192 0.808 38 H 0.243 0.757 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.967 -22.494 7.675 23.848 hybrid contribution -1.565 -1.863 0.593 2.505 sum 0.401 -24.357 8.267 25.725 Atomic orbital electron populations 1.70926 1.07767 1.30318 1.47583 1.27110 0.96531 1.06044 0.92418 0.82968 0.74141 0.71631 0.77826 1.20075 1.19413 1.21422 1.22104 0.94438 0.91816 1.55748 0.92693 1.20603 0.94936 0.93235 0.93231 1.23561 0.99664 0.77345 1.00195 1.50289 1.41846 1.04929 1.39843 1.19878 0.82647 0.80848 0.82582 1.90624 1.57541 1.40799 1.57720 1.22064 1.01075 0.97920 0.97180 0.83885 1.22968 1.00470 0.97322 0.92277 1.22589 0.98472 0.90113 1.04233 1.22370 0.91324 0.85543 0.95177 1.49788 1.27083 1.06349 1.53078 1.17177 0.84043 0.80478 0.78961 1.90765 1.28987 1.82494 1.42317 1.21054 0.94776 0.95635 1.03191 1.21470 1.03113 0.89972 1.03973 1.27644 0.99900 1.08428 1.04927 1.80427 1.22635 0.88633 1.40806 1.72205 1.12583 1.31564 1.22394 1.22823 0.92918 0.76820 1.04137 1.23215 0.94381 0.91862 0.91119 0.92884 0.95071 0.89992 0.91116 0.88338 0.84050 0.90189 0.89969 0.80787 0.75716 0.87768 0.87624 0.92051 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.61 13.65 21.45 0.29 -51.31 16 2 C -0.02 -1.09 5.46 84.66 0.46 -0.63 16 3 Si 1.11 45.97 29.90 68.60 2.05 48.02 16 4 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.60 -30.36 8.77 25.60 0.22 -30.13 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 9 C 0.00 -0.04 3.09 -10.88 -0.03 -0.07 16 10 C 0.11 4.47 8.12 86.48 0.70 5.18 16 11 N -0.64 -24.19 3.61 -836.80 -3.02 -27.21 16 12 C 0.55 19.60 7.84 87.66 0.69 20.29 16 13 O -0.58 -23.89 15.86 -3.03 -0.05 -23.94 16 14 C -0.16 -4.23 5.94 -11.72 -0.07 -4.30 16 15 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 16 C -0.09 -1.99 10.24 30.42 0.31 -1.68 16 17 C -0.15 -3.66 3.03 -52.39 -0.16 -3.82 16 18 C 0.18 4.92 6.12 86.24 0.53 5.45 16 19 N -0.63 -16.86 3.61 -850.90 -3.07 -19.93 16 20 C 0.61 17.56 8.04 86.74 0.70 18.26 16 21 O -0.57 -18.73 17.38 -3.97 -0.07 -18.80 16 22 C 0.03 0.63 6.66 42.12 0.28 0.92 16 23 C -0.15 -2.75 9.98 21.82 0.22 -2.53 16 24 C -0.26 -2.80 11.41 67.08 0.77 -2.03 16 25 S 0.52 7.08 23.20 -56.49 -1.31 5.77 16 26 N -0.55 -12.78 9.20 -75.31 -0.69 -13.48 16 27 C 0.15 3.36 8.85 86.24 0.76 4.12 16 28 C 0.12 4.72 8.39 86.48 0.73 5.45 16 29 H 0.26 14.42 7.04 -92.70 -0.65 13.76 16 30 H 0.03 1.55 7.61 -2.39 -0.02 1.54 16 31 H 0.08 3.17 8.09 -2.39 -0.02 3.15 16 32 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.14 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.08 2.44 8.01 -2.38 -0.02 2.42 16 36 H 0.08 2.45 7.34 -2.39 -0.02 2.43 16 37 H 0.17 2.90 7.99 -2.91 -0.02 2.88 16 38 H 0.23 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.08 3.20 8.09 -2.39 -0.02 3.18 16 Total: -1.00 -69.67 376.72 1.41 -68.26 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.17 Total: 18.17 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.10 Total: 14.45 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -6.49 Total: -111.93 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.12 Total: -42.74 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.05 Total: 48.02 kcal Atomic # 16 Polarization: 7.08 SS G_CDS: -1.31 Total: 5.77 kcal Total: -69.67 1.41 -68.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276530717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.256 kcal (2) G-P(sol) polarization free energy of solvation -69.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds