Wall clock time and date at job start Wed Apr 1 2020 04:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99912 * 2 1 4 4 H 1.48498 * 109.47247 * 90.00065 * 3 2 1 5 5 H 1.48494 * 109.46767 * 209.99832 * 3 2 1 6 6 H 1.48503 * 109.46804 * 329.99555 * 3 2 1 7 7 C 1.38810 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00162 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47045 * 174.94033 * 10 9 7 12 12 H 1.09005 * 109.87155 * 54.96294 * 11 10 9 13 13 C 1.54315 * 109.88339 * 293.78712 * 11 10 9 14 14 C 1.55157 * 102.94282 * 218.39089 * 13 11 10 15 15 C 1.54909 * 101.58070 * 35.50106 * 14 13 11 16 16 N 1.47016 * 109.87981 * 175.97690 * 11 10 9 17 17 C 1.34785 * 125.64993 * 298.39552 * 16 11 10 18 18 O 1.21630 * 120.00062 * 4.71505 * 17 16 11 19 19 C 1.47269 * 119.99647 * 184.71559 * 17 16 11 20 20 C 1.35085 * 122.42329 * 179.97438 * 19 17 16 21 21 S 1.71009 * 109.14065 * 180.02562 * 20 19 17 22 22 C 1.75987 * 90.59270 * 0.02562 * 21 20 19 23 23 C 1.47879 * 125.32096 * 180.02562 * 22 21 20 24 24 C 1.46851 * 127.13994 * 359.68354 * 23 22 21 25 25 C 1.34305 * 106.00788 * 179.89364 * 24 23 22 26 26 O 1.34170 * 109.05151 * 0.37195 * 25 24 23 27 27 C 1.34007 * 110.80256 * 359.75849 * 26 25 24 28 28 N 1.29883 * 109.36568 * 359.73603 * 22 21 20 29 29 H 0.97002 * 120.00198 * 180.02562 * 1 2 3 30 30 H 0.96998 * 119.99837 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47169 * 294.94080 * 10 9 7 32 32 H 1.08997 * 109.46773 * 54.94480 * 10 9 7 33 33 H 1.09002 * 110.72445 * 336.75259 * 13 11 10 34 34 H 1.08996 * 110.72302 * 100.03026 * 13 11 10 35 35 H 1.09008 * 111.00321 * 277.42880 * 14 13 11 36 36 H 1.09002 * 111.00636 * 153.57553 * 14 13 11 37 37 H 1.09004 * 110.36507 * 204.15674 * 15 14 13 38 38 H 1.08999 * 110.46184 * 81.87837 * 15 14 13 39 39 H 1.08001 * 125.43520 * 359.97438 * 20 19 17 40 40 H 1.07998 * 126.99750 * 0.02562 * 24 23 22 41 41 H 1.07998 * 125.47509 * 180.09509 * 25 24 23 42 42 H 1.08001 * 125.78903 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0686 -4.8169 0.1278 12 1 0.3183 -4.7520 -0.6602 13 6 0.3865 -4.7755 1.5113 14 6 0.2884 -6.2756 1.8954 15 6 1.6010 -6.8370 1.2941 16 7 1.7846 -6.0973 0.0322 17 6 2.4924 -6.5240 -1.0326 18 8 2.6491 -5.7924 -1.9915 19 6 3.0760 -7.8762 -1.0348 20 6 3.7931 -8.3538 -2.0752 21 16 4.3038 -9.9467 -1.7199 22 6 3.5022 -9.8742 -0.1549 23 6 3.4792 -10.9633 0.8452 24 6 4.1007 -12.2886 0.7273 25 6 3.8205 -12.9322 1.8722 26 8 3.0880 -12.1288 2.6584 27 6 2.8728 -10.9477 2.0630 28 7 2.9389 -8.7125 -0.0129 29 1 -0.4850 -0.8400 0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6150 -3.7548 -0.9313 32 1 2.7509 -3.6762 0.8418 33 1 1.0022 -4.2332 2.2289 34 1 -0.6058 -4.3304 1.4389 35 1 -0.5829 -6.7408 1.4343 36 1 0.2694 -6.4013 2.9780 37 1 1.5019 -7.9045 1.0972 38 1 2.4381 -6.6523 1.9674 39 1 4.0088 -7.8159 -2.9865 40 1 4.6694 -12.6677 -0.1090 41 1 4.1309 -13.9369 2.1186 42 1 2.3128 -10.1233 2.4792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277964749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:38 Heat of formation + Delta-G solvation = 53.798940 kcal Electronic energy + Delta-G solvation = -27309.571674 eV Core-core repulsion = 23384.144473 eV Total energy + Delta-G solvation = -3925.427201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.89718 -40.72508 -39.07238 -37.28850 -34.71124 -33.90297 -31.73146 -31.27523 -31.06638 -29.48910 -28.54194 -26.21178 -24.94098 -24.00704 -22.56359 -22.19163 -21.98563 -20.68003 -20.01228 -19.26743 -18.46512 -17.95019 -17.12142 -16.54228 -16.47674 -16.12009 -15.79320 -15.34973 -15.00563 -14.47804 -14.13765 -13.87790 -13.69775 -13.62678 -13.56118 -13.42489 -13.27437 -12.99105 -12.70475 -12.60873 -12.30587 -11.96368 -11.57230 -11.21246 -10.88632 -10.74726 -10.55819 -10.53439 -10.42141 -10.04902 -9.96670 -9.92375 -9.79504 -9.49721 -9.14646 -8.77653 -8.66297 -8.36404 -6.90309 -6.02571 -3.00935 0.00379 0.82707 1.23880 1.25486 1.57566 2.40486 2.53192 3.04712 3.36309 3.48649 3.56970 3.62709 3.76669 4.26685 4.31083 4.56128 4.71183 4.76034 4.78118 4.92507 5.01877 5.07465 5.10215 5.20370 5.44986 5.46102 5.54738 5.61749 5.68527 5.75708 5.80134 5.91309 5.97038 6.01343 6.12287 6.16775 6.40603 6.52460 6.54895 6.80285 7.01686 7.10434 7.64546 7.90193 8.23723 8.83775 9.31460 10.17532 10.33047 11.46397 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.002383 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.140656 B =11746.714754 C =12669.422103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.048 4.048 3 Si 1.084 2.916 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.324 4.324 8 H 0.063 0.937 9 N -0.739 5.739 10 C 0.151 3.849 11 C 0.130 3.870 12 H 0.075 0.925 13 C -0.120 4.120 14 C -0.137 4.137 15 C 0.099 3.901 16 N -0.593 5.593 17 C 0.599 3.401 18 O -0.523 6.523 19 C 0.027 3.973 20 C -0.218 4.218 21 S 0.179 5.821 22 C 0.125 3.875 23 C -0.136 4.136 24 C -0.198 4.198 25 C -0.027 4.027 26 O -0.175 6.175 27 C 0.037 3.963 28 N -0.438 5.438 29 H 0.254 0.746 30 H 0.366 0.634 31 H 0.036 0.964 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.193 0.807 40 H 0.157 0.843 41 H 0.209 0.791 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 -32.211 3.959 33.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.245 4.245 3 Si 0.915 3.085 4 H -0.224 1.224 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.455 4.455 8 H 0.081 0.919 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.027 3.973 12 H 0.093 0.907 13 C -0.158 4.158 14 C -0.175 4.175 15 C -0.024 4.024 16 N -0.325 5.325 17 C 0.384 3.616 18 O -0.399 6.399 19 C -0.108 4.108 20 C -0.360 4.360 21 S 0.438 5.562 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.219 4.219 25 C -0.093 4.093 26 O -0.070 6.070 27 C -0.036 4.036 28 N -0.153 5.153 29 H 0.065 0.935 30 H 0.199 0.801 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.082 0.918 39 H 0.210 0.790 40 H 0.174 0.826 41 H 0.226 0.774 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.476 -30.842 3.515 31.929 hybrid contribution -0.257 -0.707 -0.334 0.823 sum 7.219 -31.549 3.181 32.520 Atomic orbital electron populations 1.70845 1.05972 1.28304 1.54154 1.25761 0.97101 1.00889 1.00722 0.83183 0.73895 0.75302 0.76155 1.22376 1.22215 1.21390 1.20049 0.92016 0.85679 1.47775 0.91864 1.42212 1.04729 1.00706 1.90915 1.20917 0.93242 0.84524 0.99038 1.21883 0.94389 0.83062 0.98003 0.90700 1.22658 1.01632 0.95787 0.95751 1.22857 0.97360 0.96329 1.00997 1.22644 0.97039 0.98154 0.84567 1.48223 1.50116 1.19456 1.14742 1.16730 0.78492 0.84141 0.82257 1.90875 1.59420 1.55098 1.34489 1.20123 1.03390 0.96722 0.90603 1.26498 1.03739 1.00261 1.05461 1.83756 1.49576 1.09488 1.13379 1.24899 0.99931 0.94048 0.96225 1.19032 1.07411 0.93088 0.94618 1.22770 1.05699 0.92951 1.00459 1.23926 0.97852 0.97089 0.90436 1.83940 1.56856 1.22765 1.43467 1.24367 0.99980 0.87304 0.91981 1.67206 1.20027 1.01164 1.26936 0.93476 0.80108 0.94661 0.96085 0.89916 0.90037 0.90970 0.90036 0.87978 0.91757 0.79025 0.82583 0.77441 0.76727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.24 13.70 55.49 0.76 -29.48 16 2 C -0.05 -1.45 5.50 -17.43 -0.10 -1.55 16 3 Si 1.08 27.19 29.92 -169.99 -5.09 22.10 16 4 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 7 C -0.32 -9.75 9.99 -15.06 -0.15 -9.90 16 8 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.74 -20.02 5.40 -59.91 -0.32 -20.34 16 10 C 0.15 3.51 5.64 -4.04 -0.02 3.49 16 11 C 0.13 2.41 2.96 -66.96 -0.20 2.21 16 12 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 13 C -0.12 -1.87 6.18 -24.90 -0.15 -2.02 16 14 C -0.14 -1.60 7.08 -24.58 -0.17 -1.77 16 15 C 0.10 1.26 6.19 -2.53 -0.02 1.24 16 16 N -0.59 -9.83 3.07 -164.33 -0.50 -10.33 16 17 C 0.60 10.58 7.64 -12.59 -0.10 10.48 16 18 O -0.52 -11.09 15.46 5.25 0.08 -11.01 16 19 C 0.03 0.38 6.57 -84.92 -0.56 -0.18 16 20 C -0.22 -2.56 10.56 29.61 0.31 -2.25 16 21 S 0.18 1.53 23.07 -107.50 -2.48 -0.96 16 22 C 0.12 1.24 7.46 -14.43 -0.11 1.14 16 23 C -0.14 -1.11 6.32 -103.25 -0.65 -1.76 16 24 C -0.20 -1.17 11.04 -37.49 -0.41 -1.58 16 25 C -0.03 -0.12 12.04 29.34 0.35 0.23 16 26 O -0.18 -1.15 10.54 6.86 0.07 -1.08 16 27 C 0.04 0.26 12.05 29.95 0.36 0.62 16 28 N -0.44 -5.27 7.15 -8.11 -0.06 -5.33 16 29 H 0.25 7.97 6.77 -40.82 -0.28 7.70 16 30 H 0.37 9.89 6.41 -40.82 -0.26 9.63 16 31 H 0.04 0.92 6.58 -51.93 -0.34 0.58 16 32 H 0.02 0.50 8.05 -51.93 -0.42 0.08 16 33 H 0.08 1.39 7.78 -51.93 -0.40 0.99 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 1.17 5.71 -51.93 -0.30 0.88 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.19 2.13 7.99 -52.49 -0.42 1.71 16 40 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.21 0.17 8.06 -52.49 -0.42 -0.25 16 42 H 0.22 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -37.44 368.85 -8.60 -46.04 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.01 Total: 6.43 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.61 Total: -1.59 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: -0.12 Total: -65.49 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.15 Total: -12.09 kcal Atomic # 14 Polarization: 27.19 SS G_CDS: -5.09 Total: 22.10 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.48 Total: -0.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.44 -8.60 -46.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277964749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.835 kcal (2) G-P(sol) polarization free energy of solvation -37.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds