Wall clock time and date at job start Wed Apr 1 2020 04:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 120.00013 * 2 1 4 4 H 1.48506 * 109.46828 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46831 * 299.99685 * 3 2 1 6 6 H 1.48498 * 109.47160 * 59.99731 * 3 2 1 7 7 C 1.38797 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99959 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.81006 * 100.00223 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47135 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00360 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00004 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00466 * 179.97438 * 13 11 10 15 15 H 1.08999 * 115.51407 * 9.58972 * 14 13 11 16 16 C 1.52995 * 117.44750 * 224.24000 * 14 13 11 17 17 H 1.09004 * 119.54069 * 4.11737 * 16 14 13 18 18 C 1.57695 * 116.11246 * 161.63636 * 16 14 13 19 19 N 1.48150 * 104.66943 * 87.30947 * 18 16 14 20 20 C 1.34775 * 127.83398 * 139.77851 * 19 18 16 21 21 O 1.21513 * 120.00335 * 176.86302 * 20 19 18 22 22 C 1.48157 * 120.00325 * 356.85821 * 20 19 18 23 23 C 1.39821 * 120.91737 * 28.84439 * 22 20 19 24 24 C 1.38145 * 118.99664 * 179.79780 * 23 22 20 25 25 N 1.31814 * 120.90081 * 0.49343 * 24 23 22 26 26 C 1.31821 * 122.04494 * 359.73412 * 25 24 23 27 27 C 1.38149 * 120.89509 * 0.02693 * 26 25 24 28 28 C 1.48133 * 104.32650 * 319.77207 * 19 18 16 29 29 C 1.53004 * 117.44373 * 154.99689 * 14 13 11 30 30 H 1.08994 * 119.54050 * 355.88358 * 29 14 13 31 31 H 0.97001 * 119.99661 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.46682 * 59.99673 * 10 9 7 33 33 H 1.08999 * 109.46810 * 300.00087 * 10 9 7 34 34 H 0.97006 * 119.99740 * 359.97438 * 13 11 10 35 35 H 1.09001 * 110.92026 * 328.23359 * 18 16 14 36 36 H 1.08996 * 109.93677 * 205.88994 * 18 16 14 37 37 H 1.07998 * 120.49911 * 0.02562 * 23 22 20 38 38 H 1.08002 * 119.55525 * 180.22889 * 24 23 22 39 39 H 1.07997 * 119.54761 * 180.02562 * 26 25 24 40 40 H 1.07999 * 120.49877 * 179.97438 * 27 26 25 41 41 H 1.09001 * 110.41552 * 280.80469 * 28 19 18 42 42 H 1.09001 * 110.51018 * 158.41761 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8439 -6.3431 0.0018 14 6 2.3302 -7.7151 0.0030 15 1 1.2572 -7.8148 -0.1606 16 6 2.9941 -8.7159 0.9509 17 1 3.7697 -8.3739 1.6361 18 6 2.1699 -10.0221 1.2692 19 7 2.5318 -10.9671 0.1871 20 6 2.7641 -12.2908 0.2889 21 8 2.9973 -12.9452 -0.7080 22 6 2.7351 -12.9481 1.6164 23 6 1.9346 -12.4485 2.6481 24 6 1.9348 -13.0951 3.8689 25 7 2.6827 -14.1617 4.0698 26 6 3.4550 -14.6624 3.1261 27 6 3.5121 -14.0815 1.8739 28 6 2.5803 -10.1271 -1.0321 29 6 3.2353 -8.8075 -0.5703 30 1 4.1905 -8.5337 -1.0182 31 1 -0.4850 0.8401 -0.0004 32 1 3.1244 -3.7313 0.8905 33 1 3.1243 -3.7314 -0.8894 34 1 3.8008 -6.1835 0.0015 35 1 1.0990 -9.8198 1.2548 36 1 2.4674 -10.4222 2.2385 37 1 1.3225 -11.5726 2.4918 38 1 1.3169 -12.7192 4.6710 39 1 4.0510 -15.5384 3.3347 40 1 4.1473 -14.4968 1.1056 41 1 1.5734 -9.9411 -1.4059 42 1 3.1882 -10.6043 -1.8007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284145848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:35 Heat of formation + Delta-G solvation = 21.660758 kcal Electronic energy + Delta-G solvation = -25966.239974 eV Core-core repulsion = 22039.419156 eV Total energy + Delta-G solvation = -3926.820817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37557 -40.33536 -39.24232 -38.31272 -35.07984 -33.40882 -32.49050 -32.39797 -31.78592 -29.26553 -28.92657 -26.78485 -25.54512 -24.31284 -24.01200 -21.85610 -20.90740 -20.70595 -20.32762 -18.21379 -17.94694 -17.22257 -16.97411 -16.59039 -16.39687 -16.05337 -15.64548 -15.24317 -15.02752 -14.85702 -14.46166 -14.34291 -14.25161 -13.91186 -13.78346 -13.55709 -13.11032 -12.99703 -12.88648 -12.60206 -12.36798 -12.17222 -11.82889 -11.18582 -11.10893 -11.08332 -10.94530 -10.82030 -10.43055 -10.38651 -9.97694 -9.86880 -9.74192 -9.61171 -9.30500 -9.13186 -8.89780 -8.31659 -6.57316 -6.27633 -3.98863 0.22781 0.53429 2.16521 2.34831 2.71809 2.78428 3.17756 3.21378 3.26826 3.27892 3.28929 3.50368 3.79047 3.89442 4.11981 4.14412 4.21799 4.27392 4.32668 4.39703 4.49521 4.55266 4.72279 4.88454 4.93257 4.98207 5.02697 5.08039 5.20250 5.21752 5.33181 5.35873 5.42697 5.50316 5.61162 5.63075 5.75770 5.77463 6.03434 6.04106 6.39850 6.91440 7.36949 7.47050 7.52260 7.54565 8.29569 8.40276 9.18110 10.79829 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.027150 B = 0.001644 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.060197 B =17024.361130 C =17496.224928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.539 3.461 12 O -0.511 6.511 13 N -0.710 5.710 14 C 0.134 3.866 15 H 0.141 0.859 16 C -0.186 4.186 17 H 0.130 0.870 18 C 0.115 3.885 19 N -0.614 5.614 20 C 0.581 3.419 21 O -0.527 6.527 22 C -0.080 4.080 23 C -0.153 4.153 24 C 0.099 3.901 25 N -0.471 5.471 26 C 0.098 3.902 27 C -0.119 4.119 28 C 0.137 3.863 29 C -0.189 4.189 30 H 0.125 0.875 31 H 0.268 0.732 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.402 0.598 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.769 -26.176 4.792 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.325 3.675 12 O -0.384 6.384 13 N -0.362 5.362 14 C 0.026 3.974 15 H 0.158 0.842 16 C -0.207 4.207 17 H 0.148 0.852 18 C -0.008 4.008 19 N -0.347 5.347 20 C 0.370 3.630 21 O -0.404 6.404 22 C -0.091 4.091 23 C -0.173 4.173 24 C -0.058 4.058 25 N -0.180 5.180 26 C -0.059 4.059 27 C -0.140 4.140 28 C 0.015 3.985 29 C -0.210 4.210 30 H 0.143 0.857 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.168 0.832 38 H 0.182 0.818 39 H 0.181 0.819 40 H 0.164 0.836 41 H 0.102 0.898 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.712 -27.242 5.048 28.507 hybrid contribution 2.637 1.868 -0.802 3.330 sum 9.349 -25.373 4.246 27.372 Atomic orbital electron populations 1.70021 1.05958 1.27439 1.46785 1.24995 0.95037 0.99070 0.94453 0.86109 0.79567 0.81821 0.77950 1.19616 1.20527 1.20533 1.22900 0.94955 0.91563 1.59068 0.90817 1.85414 1.04617 0.96367 1.96741 1.23539 1.06848 0.94903 1.05161 1.20377 0.86443 0.86116 0.74513 1.90709 1.15303 1.85421 1.46933 1.45402 1.10045 1.03753 1.76987 1.21599 0.98141 0.78961 0.98706 0.84182 1.24942 1.04273 0.98255 0.93277 0.85190 1.22894 0.99245 0.87134 0.91536 1.49033 1.68319 1.06520 1.10855 1.17787 0.76727 0.80076 0.88388 1.90819 1.48918 1.62812 1.37817 1.20251 0.98590 0.96580 0.93707 1.22778 0.99624 1.01135 0.93763 1.22854 0.95798 0.91030 0.96081 1.67593 1.05080 1.11042 1.34310 1.22845 0.95645 0.98898 0.88470 1.22284 0.98551 0.94294 0.98849 1.21778 1.01628 0.87749 0.87381 1.24122 1.02861 0.97131 0.96847 0.85727 0.92170 0.88996 0.88983 0.76387 0.89196 0.88589 0.83190 0.81818 0.81854 0.83629 0.89828 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 10 C -0.15 -2.87 6.16 36.00 0.22 -2.65 16 11 C 0.54 9.05 7.85 -10.99 -0.09 8.96 16 12 O -0.51 -10.59 15.43 5.56 0.09 -10.51 16 13 N -0.71 -8.08 5.56 -53.81 -0.30 -8.38 16 14 C 0.13 1.29 5.92 -67.93 -0.40 0.89 16 15 H 0.14 1.56 7.40 -51.93 -0.38 1.18 16 16 C -0.19 -1.34 7.34 -87.38 -0.64 -1.99 16 17 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 18 C 0.11 0.73 5.18 -0.57 0.00 0.72 16 19 N -0.61 -5.11 3.32 -168.17 -0.56 -5.66 16 20 C 0.58 5.87 7.72 -12.19 -0.09 5.78 16 21 O -0.53 -7.07 17.07 5.35 0.09 -6.98 16 22 C -0.08 -0.66 5.74 -104.64 -0.60 -1.26 16 23 C -0.15 -0.97 8.00 -39.02 -0.31 -1.28 16 24 C 0.10 0.63 11.17 -17.59 -0.20 0.44 16 25 N -0.47 -3.77 10.34 -13.30 -0.14 -3.91 16 26 C 0.10 0.66 11.17 -17.59 -0.20 0.46 16 27 C -0.12 -0.88 9.70 -39.03 -0.38 -1.26 16 28 C 0.14 1.10 6.84 -2.41 -0.02 1.08 16 29 C -0.19 -1.42 6.98 -89.22 -0.62 -2.04 16 30 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 33 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 34 H 0.40 3.43 8.83 -40.82 -0.36 3.07 16 35 H 0.09 0.51 8.09 -51.93 -0.42 0.08 16 36 H 0.10 0.49 5.29 -51.93 -0.27 0.21 16 37 H 0.15 0.67 5.29 -52.49 -0.28 0.39 16 38 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.15 0.96 7.98 -52.49 -0.42 0.54 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.79 7.91 -51.93 -0.41 0.38 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -36.46 374.87 -9.85 -46.31 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.05 Total: 0.84 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -3.13 Total: -4.71 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.26 Total: -42.76 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.18 Total: -17.49 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.46 -9.85 -46.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284145848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.975 kcal (2) G-P(sol) polarization free energy of solvation -36.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds