Wall clock time and date at job start Wed Apr 1 2020 04:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 120.00013 * 2 1 4 4 H 1.48506 * 109.46828 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46831 * 299.99685 * 3 2 1 6 6 H 1.48498 * 109.47160 * 59.99731 * 3 2 1 7 7 C 1.38797 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99959 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00171 * 0.02562 * 7 2 1 10 10 C 1.81006 * 100.00223 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47135 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00360 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00004 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00466 * 179.97438 * 13 11 10 15 15 H 1.08999 * 115.51407 * 9.58972 * 14 13 11 16 16 C 1.52995 * 117.44750 * 224.24000 * 14 13 11 17 17 H 1.09004 * 119.54069 * 4.11737 * 16 14 13 18 18 C 1.57695 * 116.11246 * 161.63636 * 16 14 13 19 19 N 1.48150 * 104.66943 * 87.30947 * 18 16 14 20 20 C 1.34775 * 127.83398 * 139.77851 * 19 18 16 21 21 O 1.21513 * 120.00335 * 176.86302 * 20 19 18 22 22 C 1.48157 * 120.00325 * 356.85821 * 20 19 18 23 23 C 1.39821 * 120.91737 * 28.84439 * 22 20 19 24 24 C 1.38145 * 118.99664 * 179.79780 * 23 22 20 25 25 N 1.31814 * 120.90081 * 0.49343 * 24 23 22 26 26 C 1.31821 * 122.04494 * 359.73412 * 25 24 23 27 27 C 1.38149 * 120.89509 * 0.02693 * 26 25 24 28 28 C 1.48133 * 104.32650 * 319.77207 * 19 18 16 29 29 C 1.53004 * 117.44373 * 154.99689 * 14 13 11 30 30 H 1.08994 * 119.54050 * 355.88358 * 29 14 13 31 31 H 0.97001 * 119.99661 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.46682 * 59.99673 * 10 9 7 33 33 H 1.08999 * 109.46810 * 300.00087 * 10 9 7 34 34 H 0.97006 * 119.99740 * 359.97438 * 13 11 10 35 35 H 1.09001 * 110.92026 * 328.23359 * 18 16 14 36 36 H 1.08996 * 109.93677 * 205.88994 * 18 16 14 37 37 H 1.07998 * 120.49911 * 0.02562 * 23 22 20 38 38 H 1.08002 * 119.55525 * 180.22889 * 24 23 22 39 39 H 1.07997 * 119.54761 * 180.02562 * 26 25 24 40 40 H 1.07999 * 120.49877 * 179.97438 * 27 26 25 41 41 H 1.09001 * 110.41552 * 280.80469 * 28 19 18 42 42 H 1.09001 * 110.51018 * 158.41761 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8439 -6.3431 0.0018 14 6 2.3302 -7.7151 0.0030 15 1 1.2572 -7.8148 -0.1606 16 6 2.9941 -8.7159 0.9509 17 1 3.7697 -8.3739 1.6361 18 6 2.1699 -10.0221 1.2692 19 7 2.5318 -10.9671 0.1871 20 6 2.7641 -12.2908 0.2889 21 8 2.9973 -12.9452 -0.7080 22 6 2.7351 -12.9481 1.6164 23 6 1.9346 -12.4485 2.6481 24 6 1.9348 -13.0951 3.8689 25 7 2.6827 -14.1617 4.0698 26 6 3.4550 -14.6624 3.1261 27 6 3.5121 -14.0815 1.8739 28 6 2.5803 -10.1271 -1.0321 29 6 3.2353 -8.8075 -0.5703 30 1 4.1905 -8.5337 -1.0182 31 1 -0.4850 0.8401 -0.0004 32 1 3.1244 -3.7313 0.8905 33 1 3.1243 -3.7314 -0.8894 34 1 3.8008 -6.1835 0.0015 35 1 1.0990 -9.8198 1.2548 36 1 2.4674 -10.4222 2.2385 37 1 1.3225 -11.5726 2.4918 38 1 1.3169 -12.7192 4.6710 39 1 4.0510 -15.5384 3.3347 40 1 4.1473 -14.4968 1.1056 41 1 1.5734 -9.9411 -1.4059 42 1 3.1882 -10.6043 -1.8007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284145848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:34 Heat of formation + Delta-G solvation = -4.195797 kcal Electronic energy + Delta-G solvation = -25967.361198 eV Core-core repulsion = 22039.419156 eV Total energy + Delta-G solvation = -3927.942041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 347.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.03108 -41.06484 -40.24717 -39.23105 -35.99714 -34.57700 -34.16406 -33.23344 -32.30572 -30.62548 -29.53762 -27.74056 -27.42817 -24.94228 -24.50993 -22.68166 -21.86930 -21.48342 -21.05549 -19.82081 -18.82863 -18.01698 -17.88199 -17.69124 -17.02999 -16.87192 -16.75817 -16.40576 -16.32044 -16.01811 -15.78347 -15.08896 -14.90591 -14.71900 -14.64477 -14.51487 -14.42596 -13.98223 -13.83018 -13.61253 -13.37544 -13.14960 -12.91682 -12.84231 -12.59564 -12.41841 -12.03466 -11.72399 -11.69420 -11.15278 -11.15096 -11.01327 -10.96177 -10.52221 -10.26095 -10.22812 -10.00027 -9.84030 -8.65017 -8.34240 -6.11559 -0.35089 0.05442 1.24326 1.42064 1.42827 1.49890 1.51838 1.59310 1.67335 2.13283 2.27966 2.52173 2.75897 3.00434 3.17041 3.29352 3.45802 3.49716 3.55912 3.62271 3.80905 3.86747 3.90605 3.91004 4.03442 4.13021 4.30765 4.32862 4.49764 4.51690 4.52879 4.66349 4.69038 4.71635 4.78023 4.86780 4.92913 5.03096 5.06384 5.43450 5.43987 5.57418 6.20921 6.22915 6.43868 6.78888 6.88058 7.07851 7.19510 8.75035 Molecular weight = 347.11amu Principal moments of inertia in cm(-1) A = 0.027150 B = 0.001644 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.060197 B =17024.361130 C =17496.224928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.543 3.457 12 O -0.558 6.558 13 N -0.684 5.684 14 C 0.109 3.891 15 H 0.122 0.878 16 C -0.166 4.166 17 H 0.147 0.853 18 C 0.112 3.888 19 N -0.611 5.611 20 C 0.579 3.421 21 O -0.570 6.570 22 C -0.096 4.096 23 C -0.147 4.147 24 C 0.097 3.903 25 N -0.493 5.493 26 C 0.097 3.903 27 C -0.127 4.127 28 C 0.131 3.869 29 C -0.172 4.172 30 H 0.140 0.860 31 H 0.271 0.729 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.419 0.581 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.169 0.831 38 H 0.190 0.810 39 H 0.187 0.813 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.984 -26.455 5.946 29.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.078 5.922 10 C -0.282 4.282 11 C 0.329 3.671 12 O -0.436 6.436 13 N -0.336 5.336 14 C 0.002 3.998 15 H 0.140 0.860 16 C -0.187 4.187 17 H 0.165 0.835 18 C -0.010 4.010 19 N -0.343 5.343 20 C 0.369 3.631 21 O -0.450 6.450 22 C -0.107 4.107 23 C -0.167 4.167 24 C -0.060 4.060 25 N -0.202 5.202 26 C -0.059 4.059 27 C -0.148 4.148 28 C 0.009 3.991 29 C -0.192 4.192 30 H 0.158 0.842 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.257 0.743 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.186 0.814 38 H 0.207 0.793 39 H 0.204 0.796 40 H 0.165 0.835 41 H 0.103 0.897 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.980 -27.543 6.218 29.630 hybrid contribution 1.977 1.803 -1.158 2.915 sum 10.956 -25.740 5.060 28.429 Atomic orbital electron populations 1.70182 1.07931 1.28521 1.48092 1.26097 0.95937 1.03255 0.93804 0.84928 0.78657 0.76497 0.78011 1.18018 1.20082 1.20006 1.23245 0.95393 0.92048 1.58683 0.89841 1.85574 1.10378 0.99152 1.97053 1.23373 1.03682 0.94077 1.07049 1.20009 0.86140 0.86414 0.74538 1.90700 1.17309 1.85902 1.49657 1.45013 1.10263 1.03424 1.74892 1.21616 0.97796 0.78303 1.02051 0.86002 1.25008 1.03502 0.96842 0.93319 0.83512 1.23085 0.99847 0.86309 0.91742 1.49068 1.67383 1.06324 1.11486 1.18102 0.76021 0.80336 0.88622 1.90790 1.51115 1.63820 1.39285 1.20258 0.99912 0.97255 0.93277 1.22935 0.99081 1.01502 0.93140 1.23310 0.95481 0.90464 0.96725 1.67650 1.05789 1.11875 1.34926 1.23205 0.95463 0.99349 0.87881 1.22398 0.98749 0.94304 0.99321 1.21828 1.01802 0.87976 0.87467 1.24058 1.02352 0.95404 0.97391 0.84249 0.92019 0.86890 0.87079 0.74307 0.88187 0.86695 0.81394 0.79314 0.79566 0.83526 0.89668 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.75 13.22 21.65 0.29 -54.46 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 42.52 29.55 68.60 2.03 44.55 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.55 -30.16 9.50 67.95 0.65 -29.52 16 8 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 9 S -0.15 -7.90 20.57 -56.49 -1.16 -9.06 16 10 C -0.13 -4.73 6.16 71.23 0.44 -4.29 16 11 C 0.54 17.76 7.85 87.66 0.69 18.45 16 12 O -0.56 -23.56 15.43 -3.02 -0.05 -23.60 16 13 N -0.68 -14.09 5.56 -442.55 -2.46 -16.55 16 14 C 0.11 1.91 5.92 44.99 0.27 2.18 16 15 H 0.12 2.67 7.40 -2.39 -0.02 2.65 16 16 C -0.17 -1.91 7.34 -8.70 -0.06 -1.97 16 17 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 18 C 0.11 1.14 5.18 87.73 0.45 1.59 16 19 N -0.61 -9.28 3.32 -804.28 -2.67 -11.95 16 20 C 0.58 11.33 7.72 86.88 0.67 12.00 16 21 O -0.57 -15.51 17.07 -3.75 -0.06 -15.58 16 22 C -0.10 -1.47 5.74 -19.88 -0.11 -1.58 16 23 C -0.15 -1.55 8.00 22.63 0.18 -1.37 16 24 C 0.10 1.02 11.17 84.67 0.95 1.97 16 25 N -0.49 -7.02 10.34 -196.00 -2.03 -9.04 16 26 C 0.10 1.17 11.17 84.67 0.95 2.11 16 27 C -0.13 -1.77 9.70 22.63 0.22 -1.56 16 28 C 0.13 1.96 6.84 86.54 0.59 2.55 16 29 C -0.17 -2.18 6.98 -9.88 -0.07 -2.25 16 30 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 34 H 0.42 5.76 8.83 -92.70 -0.82 4.94 16 35 H 0.10 0.89 8.09 -2.39 -0.02 0.87 16 36 H 0.12 0.79 5.29 -2.39 -0.01 0.78 16 37 H 0.17 1.04 5.29 -2.91 -0.02 1.03 16 38 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.15 1.92 7.98 -2.91 -0.02 1.90 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.09 1.44 7.91 -2.39 -0.02 1.42 16 Total: -1.00 -82.23 374.87 0.41 -81.82 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.26 Total: 14.32 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 6.27 Total: -0.44 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -6.87 Total: -92.00 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.11 Total: -39.18 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -82.23 0.41 -81.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284145848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.620 kcal (2) G-P(sol) polarization free energy of solvation -82.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds